scaffold14510	Ensembl_Plants	snRNA	36025	36127	.	+	.	ID=gene:ENSRNA049478916	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCTGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTT	scaffold14510	Ensembl_Plants	LTR	35997	36138	664	+	.	ID=2226839	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TATAAGTGTAAGCGAGGCAGCTGCATCGTCCCTTCGGGGACATCTGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTTTGAGATTTCGC
scaffold64139	Ensembl_Plants	snRNA	67162	67264	.	+	.	ID=gene:ENSRNA049478005	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTT	scaffold64139	Ensembl_Plants	LTR	67096	67276	639	+	.	ID=2226835	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=AGTCCCACATCGGCCAGCGGAGGAGAGACGCACCGGTTTATAAGCCCGGCCGCGGCAACGGACCCGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTTTTGACATTTCGC
scaffold62630	Ensembl_Plants	snRNA	66336	66437	.	+	.	ID=gene:ENSRNA049476641	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCTTCGGGGGCATCCGATAAAATTGGAACGATACAGAAAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCAAGAAATGGTCCAATTTTTT	scaffold62630	Ensembl_Plants	LTR	66269	66446	636	+	.	ID=2226842	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=AGCACCACCTTGGCTAACAACGGGAGATTAAACCAGCTTATAAGCCCCCTGGCCGCGACTAGACTTGTCCTTCGGGGGCATCCGATAAAATTGGAACGATACAGAAAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCAAGAAATGGTCCAATTTTTTTTGAGATTT
scaffold26861	Ensembl_Plants	snRNA	82741	82843	.	+	.	ID=gene:ENSRNA049478281	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTT	scaffold26861	Ensembl_Plants	LTR	82739	82855	702	+	.	ID=2226841	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTTTTGAGATTTTGC
scaffold64139	Ensembl_Plants	snRNA	91710	91812	.	+	.	ID=gene:ENSRNA049478002	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATCTTT	scaffold64139	Ensembl_Plants	LTR	91644	91838	668	+	.	ID=2226837	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=AGTCCCACGTCGGCCAGCGGAGGAGAGACGCACCGGTTTATAAGCCTCAGCGCGGCAGCAGACTCGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATCTTTTTGACATTTCGCGCGCAGGTCCTTCT
scaffold64139	Ensembl_Plants	snRNA	69061	69121	.	+	.	ID=gene:ENSRNA049477998	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=TGATTAGCATGGCCCATGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCGATTTTTT	scaffold64139	Ensembl_Plants	LTR	69062	69145	483	+	.	ID=2226836	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=ATTAGCATGGCCCATGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCGATTTTTTTAACATTTTGCGCGCTGGTCCTTT
scaffold10596	Ensembl_Plants	snRNA	17156	17262	.	-	.	ID=gene:ENSRNA049477313	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCTGATAAAATTGGAACGATACAGAGAAAGTAGTACTAGTACTGCTACAGTACGAGTACGTACTCCTCCATCACATATTGTAAGACGTTATT	scaffold10596	Ensembl_Plants	DNA/En-Spm	16826	18540	10408	+	.	ID=844236	repeat_name=DTC_Jorge_3B_061_J17-1	repeat_type=Type II Transposons	sequence=CTCCCAGCCCTGACGAGGAAGAGAACCGCCTGGCGAATCCATGGGAGCAGCGATGAACTGCCTTCTCTTCGGGGGGAAGGAACTGGCGAGGAGGAGATAAGAGCATAGTAACCGGAGGGCCTCGTCCCTTCCAACTGTAGATTGTTCCTTAGCGAAGGGGTGAGGCTATTATTTACTACTAGTACTAGCATTATGGGACATTATGGGATTGCATTATACTTTAAATAATAGCACTAGTAAGAAATTTTTGGCACTAGCTAGTAGTTTTTGGCGTGGATTAACAAATTTTGGGTATGTTTTTGCTATTTTTGTACACGCCAACTAGCGTCAATAACGTCTTACAATATGTGATGGAGGAGTACGTACTCGTACTGTAGCAGTACTAGTACTACTTTCTCTGTATCGTTCCAATTTTATCAGATGTCCCCGAAGGGACACTAGTACTACTTTCTCAACTAGTAGTGTGATGTACTGTACTTCTAGTATAGTGCACCAGTTTTGAACTCTTGAATCTCAGGGCCAAGGAGCTACAGTTGGAAGTGGAGGGTACTACAGTTCTCTAGAACCATCACTGTACTATCAATGCAGGGAAACTACACCTACGTAGTGGCCTAGTGGGTACTCTCGGTGCTCTATTCAGCCGCTCCTCTCACGTATCTGGCCTACTCAACCGCTCCTCTCACGCACACACTAGCAGACTGTTTATCAGCGATGGTTACTGCAGGGGCAGAACATTTGAGTTATTTGATACAGCGAGACTAGGCTTTTCGCTTCCATTTGTGGAGGTGTAATGGATCTCGTCGAACTTTGTTAGTAGTTCCTTCTTTATGAATGAGATGAAGCAAAGCTTTTGCCTCTGTTTCAAAAAAAACACGTCAAGAGGAATTTCTTTTATAGTAGAGCCGATAATGGAGTGAAGTCCATGCGTGCAACACCACAAGCTACAGAGTAGTAGTAGAGCACTTTACGTGCAGAGCCATATTGCACAGTTCCCAATGCCCCGCCAGGCTTTTCCGGCTCCTCGGGCTTAATTGGGAGCTGCTAGTTGAATATGCTACTAGCTGATGACGAAGCTGCAAGCGAGGTGCAGCTAGGGCGAGCACGCGAGCCACGCGATGCTGGGAAGGAAAACATGTTCACGTGGCTAGGCTATCCAGTGCACCCAGATTGTGGTGCCGCACGTCCGTTTGACTTCAAAACTCAAACTACCAACGTCAAATATTGGCTCGCAGCGAAGTTACTATTTAAAAAAAAGGCCGCTGTGCGTTCGGCCGGGATCGAACCCACAAGACGAGGTATACACTCCCATGACTACTAGTAGTACTCGTTGGAGTACAACGCAACCTAGAATTGCCTTTTGTCGCTAGTAGTACATTGTTCCTTACACGAAACCCCTAATAATGCAAGAAACCACTAATAATGCCAAGAAACTACTACCACTTGCATACGTGGCAGACTTAAGATAAGACTACCTTATGAACCATTCTACATGCTCTTACCAACCAGCCCTACCAAGAAGCGACTACTCTACAAAGTGTCGTTATAGGCACGTTTCAACCCATGGCCCTGTTTGGATACATTTGTTGTCAATCTAACCCTGCCATCCAAACACCACTTTGGTTAGAGTTAGTTCAGGGTTAGAATCTAACTCTAACCTTAGACTTAGAGTATCCAAACAGGGCCCATGTCGCCCATTAAGTCAACGCCTTCTATT
scaffold63685	Ensembl_Plants	snRNA	45	243	.	-	.	ID=gene:ENSRNA049482699	Name=U2	biotype=snRNA	description=U2 spliceosomal RNA	sequence=ATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATTTGATATGTGGGCCATGTGCCCACAACGATATTAAATTTATCTTTTGTGGGGGAGGGTCCACCACACTACCTTGCTAGTGGGGCCCTCATGTGTCGCTTGGGCGTTGCACTATTGCCCAGGACCCTGATGTCTACTAC	scaffold63685	Ensembl_Plants	LTR/Gypsy	1	60	497	+	.	ID=237573	repeat_name=RLG_Sakura_3B_068_J02-1	repeat_type=LTRs	sequence=TCTGCACTTGGAGGCCCAACAACGTCTACAAGAAGAAGGTTGTGTAGTAGACATCAGGG
scaffold65197	Ensembl_Plants	snRNA	22131	22233	.	+	.	ID=gene:ENSRNA049481342	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATTCGGTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTATA	scaffold65197	Ensembl_Plants	DNA/CMC-EnSpm	22230	22378	295	-	.	ID=34155	repeat_name=EnSpm-4_HV	repeat_type=Type II Transposons	sequence=CACACACACATGCATGATGAACACACACACACACATTTTCTTAAGTTAATTAGTATATATGTATTTTTGTATGTTTAATTAGTTTAGATGTTTTAGATTATTATTTTTTTCAATAGAATATATGTATGAATGCATGTTAGATGGATAT
scaffold65197	Ensembl_Plants	snRNA	22131	22233	.	+	.	ID=gene:ENSRNA049481342	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATTCGGTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTATA	scaffold65197	Ensembl_Plants	DNA/En-Spm	22227	22378	961	-	.	ID=1872642	repeat_name=trep1304	repeat_type=Type II Transposons	sequence=CACACACACATGCATGATGAACACACACACACACATTTTCTTAAGTTAATTAGTATATATGTATTTTTGTATGTTTAATTAGTTTAGATGTTTTAGATTATTATTTTTTTCAATAGAATATATGTATGAATGCATGTTAGATGGATATAAT
scaffold65197	Ensembl_Plants	snRNA	22131	22233	.	+	.	ID=gene:ENSRNA049481342	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATTCGGTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTATA	scaffold65197	Ensembl_Plants	LTR	22131	22227	542	+	.	ID=2226846	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TCCCTTCGGGGACATTCGGTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAA
scaffold77594	Ensembl_Plants	snRNA	20294	20459	.	+	.	ID=gene:ENSRNA049481299	Name=U2	biotype=snRNA	description=U2 spliceosomal RNA	sequence=ATCTCTAAAAAGACAAATATTTAGGAACAGAGGGAGTACATGGGTTATGTGCCCACAATTACATGAAATTTAATTTTTGTGGGAGGATTCATCGGAGTGGCTTGCCATTCGGTTTCTCACGTGTCACCCAGACGTTGCACTACTGTCCGGACTTGGCACATCCCAA	scaffold77594	Ensembl_Plants	DNA/En-Spm	20167	20342	1192	+	.	ID=1148602	repeat_name=DTC_Jorge_3B_053_M11-1	repeat_type=Type II Transposons	sequence=ACTTCCTCCGTTTCTAAATATTTGTCTTTCTAAAAAATTCAACAAGTGACTATATACGAAGCAAAATGAGTGAATCTATATTCTAAAATATGTATATATACATCCGTATGTGGTAGTTCATTTAAAATCTCTAAAAAGACAAATATTTAGGAACAGAGGGAGTACATGGGTTATG
scaffold41285	Ensembl_Plants	snRNA	9182	9378	.	-	.	ID=gene:ENSRNA049480753	Name=U2	biotype=snRNA	description=U2 spliceosomal RNA	sequence=ATACCTTTCTCGGCCTTTTGGCTAAAATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGACTACATGTCCATAATGATATTAAATTTATTTTTTATGAGGGAGGATCCATCATAGTGGCTTGCCACTCGGGTCCTCGTGTGTTTCTCGGGCGTTGCACTATAGCCCGGGTGTGGCGCACCCCAA	scaffold41285	Ensembl_Plants	LTR	9301	9373	291	-	.	ID=2244610	repeat_name=LTR_Gm_14_4511	repeat_type=LTRs	sequence=TTTCTCGGCCTTTTGGCTAAAATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGACTAC
scaffold41285	Ensembl_Plants	snRNA	12092	12288	.	-	.	ID=gene:ENSRNA049480756	Name=U2	biotype=snRNA	description=U2 spliceosomal RNA	sequence=ATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGATTACATGTCCACAACGATATTAAATTTATTTTTTAGGGGGAGGATCCATCATAGTGGCTTGCCACTAGAGTCCTTGTGTGTTTCCTGGGCGTTGCACTACTGCCCTGGGTGTGGCGCACCCCAA	scaffold41285	Ensembl_Plants	LTR	12211	12283	313	-	.	ID=2244611	repeat_name=LTR_Gm_14_4511	repeat_type=LTRs	sequence=TTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGATTAC
scaffold41285	Ensembl_Plants	snRNA	3662	3858	.	-	.	ID=gene:ENSRNA049480758	Name=U2	biotype=snRNA	description=U2 spliceosomal RNA	sequence=ATACCTTTCTCGGCCTTTTGGCTAAAATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATATGGACTACATGTACACAACGATATTAAATTTATTTTTTGTGGGGGAGAATCCATCTTAGTGGCTTGCCACTAGGGTCCTCGCGTGTTCGTCGGGCGTTGCACTATAGCCCGGGTGTGGCGCGCCCCAC	scaffold41285	Ensembl_Plants	LTR	3781	3853	278	-	.	ID=2244609	repeat_name=LTR_Gm_14_4511	repeat_type=LTRs	sequence=TTTCTCGGCCTTTTGGCTAAAATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATATGGACTAC
scaffold32920	Ensembl_Plants	snRNA	35016	35118	.	-	.	ID=gene:ENSRNA049479809	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTT	scaffold32920	Ensembl_Plants	LTR	35006	35121	668	-	.	ID=2226844	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CCTGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTTTTGACATTT
scaffold32920	Ensembl_Plants	snRNA	50200	50302	.	-	.	ID=gene:ENSRNA049479817	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGTACATGCGATAAAACTGGAATGATACAGGGAAGATTAGCATCGCCCCTTCTCAAGGATGACACGCACAAATTAAGTAATGGTCCATTAAAAA	scaffold32920	Ensembl_Plants	LTR	50207	50304	430	-	.	ID=2226845	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TTGTCCCTTCGGGTACATGCGATAAAACTGGAATGATACAGGGAAGATTAGCATCGCCCCTTCTCAAGGATGACACGCACAAATTAAGTAATGGTCC
C166965779	Ensembl_Plants	snRNA	597	757	.	+	.	ID=gene:ENSRNA049473719	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=TTACTTAGCTGAACGGGGTCCATAAGAGATCAAGAAGTCTCATGGCCTAGATCAATGGCCTACATTGCACGTTGTAGGAGCACTGGTTTACCATCTGCCTACGGGTAGAGTGGACGTTAAAATTTATTGTAGAGGGGTTATGTGTTTAGCGCGGCCCCTAC	C166965779	Ensembl_Plants	LTR	584	762	434	+	.	ID=2241888	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=CGACATAAAAACTTACTTAGCTGAACGGGGTCCATAAGAGATCAAGAAGTCTCATGGCCTAGATCAATGGCCTACATTGCACGTTGTAGGAGCACTGGTTTACCATCTGCCTACGGGTAGAGTGGACGTTAAAATTTATTGTAGAGGGGTTATGTGTTTAGCGCGGCCCCTACCAATT
scaffold38186	Ensembl_Plants	snRNA	43413	43562	.	+	.	ID=gene:ENSRNA049471890	Name=U2	biotype=snRNA	description=U2 spliceosomal RNA	sequence=ATACTTCATGAAACGGCAATTCAGCTGCTGCTCTACATGCCCACAACAATATTAAATTTATTTTTTATGAGGGAGGGGTCACCACACTAGCTTGCTATTAGGCCTCTCATGTGTCGCCTATGCACTACCGCCTAGGCCGGCGCACCCCAA	scaffold38186	Ensembl_Plants	LTR/Gypsy	42938	43447	4128	+	.	ID=1805076	repeat_name=LTR_EF426565.1_424	repeat_type=LTRs	sequence=GCGAACATCTGACATACACATTTTGATAACTACGTGATAGTTCAGTTAAACGGTTTAGAGTTGAGGCACCGAAGACGTCTTGAAACGTCGCGAAACATATGAGATGTTTCGAGGGCTGAAATTGGGATTTCAGGCTCGTGCCCACGTCAAGAGGTATAAGACCTCCGATGATTTTCTTAACCTACAAACTAAGGGAGAAAAGCTCAATTATTGAGCTTGTGCTCAGATTGTCTAAATACAACAATCATTTGAATCAAGTGGGAGTTGATCTTTCAGATGAGATAGTGATGTTTCTCCGAAGTCATTACCACCAAGCTGCTAGAGCTTCGTGATGAACTATAATATATCAGGGACATATATGATGATCCTTGAGATATTTGCGATATTTGACACCACAAAAATAGAAATCAAGGAGCATCGATTGTTAATGGTTGGTGAAACCACTAGTTTCAAGAAGGGCAAGGGCAAGAAGGGATACTTCATGAAACGGCAATTCAGCTGCTGCTCTA
C166999017	Ensembl_Plants	snRNA	78	274	.	-	.	ID=gene:ENSRNA049468797	Name=U2	biotype=snRNA	description=U2 spliceosomal RNA	sequence=ATACCTTTCTCGGCCTTTTGGCTAAAATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATATGGACTACATGTACACAACGATATTAAATTTATTTTTTGTGGGGGAGAATCCATCTTAGTGGCTTGCCACTAGGGTCCTCGCGTGTTCGTCGGGCGTTGCACTATAGCCCGGGTGTGGCGCGCCCCAC	C166999017	Ensembl_Plants	LTR	197	269	289	-	.	ID=2244612	repeat_name=LTR_Gm_14_4511	repeat_type=LTRs	sequence=TTTCTCGGCCTTTTGGCTAAAATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATATGGACTAC
C166999017	Ensembl_Plants	snRNA	78	274	.	-	.	ID=gene:ENSRNA049468797	Name=U2	biotype=snRNA	description=U2 spliceosomal RNA	sequence=ATACCTTTCTCGGCCTTTTGGCTAAAATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATATGGACTACATGTACACAACGATATTAAATTTATTTTTTGTGGGGGAGAATCCATCTTAGTGGCTTGCCACTAGGGTCCTCGCGTGTTCGTCGGGCGTTGCACTATAGCCCGGGTGTGGCGCGCCCCAC	C166999017	Ensembl_Plants	LTR	215	326	228	+	.	ID=2245283	repeat_name=LTR_AC190580.2_6272	repeat_type=LTRs	sequence=ATTAAACTGATAAGAACAGATACTACACTTGATTTTAGCCAAAAGGCCGAGAAAGGTATGAGTTGCTATGGAGCCTTGCCCCTGCTCTTATACCCATCTGACAGGCTCCAC
scaffold3776	Ensembl_Plants	snRNA	153977	154136	.	+	.	ID=gene:ENSRNA049467912	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=TAACTTACCTGGACGGGGTTGATGACTGATTATGAAGAGTCGTGGTCTAGGCTAGTGGTCCACAGTGCATCTGATGGATGCGCTGGCTTACCATCTCCTCAAGTGGGAGAGTGGACGTCATAATTTATGATAGAGGGGGGACGCGTTCGCGCGGCCCCTA	scaffold3776	Ensembl_Plants	LTR/Gypsy	153742	153982	1465	-	.	ID=2176397	repeat_name=RLG_WHAM_3B_064_F23-1	repeat_type=LTRs	sequence=AAGTTATCAAATTCATCCAGGCATTGACTAGCAGATTTATTATAAGAAATATCACCTTCATCAAATATATAAAGAGAATTTATCTTTACTACCCGTGTCGGGGTGTCGAGCCATATATTTCTTCAATAGGTGGTAAATTCTTAACATCTTTAGATTTAATACCAGTTTCTTTTATAGATTTCTTTGCCTCTTGCATACTGAGGAATAGAATACCTCTCTTCTTTGGAGTTGCCTTAGGTA
C167039826	Ensembl_Plants	snRNA	376	499	.	-	.	ID=gene:ENSRNA049465504	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=ATACTTACCTGGATGGGGTCTATGGGCGATCAATAAAGCTTATGGCCTAGGTTAACGGCTCACATTGCACATGGTGTGTGCGTTAATTTGTGATAGAGGGGGCAAGCGTTCGCGCGGCCCCTGC	C167039826	Ensembl_Plants	LTR	359	416	249	-	.	ID=2241884	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=TAATTTGTGATAGAGGGGGCAAGCGTTCGCGCGGCCCCTGCCAAATTTTGAATTCAA
C167039826	Ensembl_Plants	snRNA	376	499	.	-	.	ID=gene:ENSRNA049465504	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=ATACTTACCTGGATGGGGTCTATGGGCGATCAATAAAGCTTATGGCCTAGGTTAACGGCTCACATTGCACATGGTGTGTGCGTTAATTTGTGATAGAGGGGGCAAGCGTTCGCGCGGCCCCTGC	C167039826	Ensembl_Plants	LTR	430	511	487	-	.	ID=2241885	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=CGACTTTGAAACATACTTACCTGGATGGGGTCTATGGGCGATCAATAAAGCTTATGGCCTAGGTTAACGGCTCACATTGCA
scaffold202678	Ensembl_Plants	snRNA	579	682	.	+	.	ID=gene:ENSRNA049464393	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GCAGAGCACCGCAGCTAGCATCATCCCTGGAACGATACAAAGAAGATTAGCATGGCCCCTGCGCAAGGATGACAAGGACAAATCGAGAAATGGTCCAAATTTTA	scaffold202678	Ensembl_Plants	LTR	580	595	263	-	.	ID=1932316	repeat_name=LTR_HVVMRXALLhA0325N20_v35_c2_2371	repeat_type=LTRs	sequence=TAGCTGCGGTGCTCT
scaffold202678	Ensembl_Plants	snRNA	579	682	.	+	.	ID=gene:ENSRNA049464393	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GCAGAGCACCGCAGCTAGCATCATCCCTGGAACGATACAAAGAAGATTAGCATGGCCCCTGCGCAAGGATGACAAGGACAAATCGAGAAATGGTCCAAATTTTA	scaffold202678	Ensembl_Plants	DNA/En-Spm	531	579	267	-	.	ID=1993147	repeat_name=DTC_Clifford_3B_018_H13-1	repeat_type=Type II Transposons	sequence=CCTTATAAACAAGTCCGACTCTCCCCAGCTGGCCGATGTGGGACTAAA
scaffold202678	Ensembl_Plants	snRNA	579	682	.	+	.	ID=gene:ENSRNA049464393	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GCAGAGCACCGCAGCTAGCATCATCCCTGGAACGATACAAAGAAGATTAGCATGGCCCCTGCGCAAGGATGACAAGGACAAATCGAGAAATGGTCCAAATTTTA	scaffold202678	Ensembl_Plants	LTR	606	693	489	+	.	ID=2226856	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=GGAACGATACAAAGAAGATTAGCATGGCCCCTGCGCAAGGATGACAAGGACAAATCGAGAAATGGTCCAAATTTTATTTGAGATTTT
C167327125	Ensembl_Plants	snRNA	2256	2417	.	+	.	ID=gene:ENSRNA049460742	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=ATAGGTCATCGCTGCAGCATACTCGACTGATCAAGAAAGGTCGTGGCCTAGATCAACTGCTCACATTGCACTTGATGAGCGTGTTGTTCTACCATCTCCCCAATTAGGAGAATGGACAGCATAATTTTTTGTAGAGGGGGCATGCGTTTGTGCGGCCCCTAC	C167327125	Ensembl_Plants	LTR	2283	2473	502	+	.	ID=2241892	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=GATCAAGAAAGGTCGTGGCCTAGATCAACTGCTCACATTGCACTTGATGAGCGTGTTGTTCTACCATCTCCCCAATTAGGAGAATGGACAGCATAATTTTTTGTAGAGGGGGCATGCGTTTGTGCGGCCCCTACTAATCTAGAAAATTCAAATTTAGAAATTAGTAAATTGTAGCTATGCATGTTTGGCA
scaffold32920	Ensembl_Plants	snRNA	33083	33185	.	-	.	ID=gene:ENSRNA049479806	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTT	scaffold32920	Ensembl_Plants	LTR	33073	33189	719	-	.	ID=2226843	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=ACTTGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTTTTGAGATTT
scaffold5138	Ensembl_Plants	rRNA	136813	137078	.	-	.	ID=gene:ENSRNA049479316	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GTCCAGACATAGCAAGGATTGATAGACTAAGAGCTCTTTCTTGATTCTATTTATGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCATTCATGAATGAGACCTCAGCCTACTAACTAGCTACGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATAGACTCATTAGGTGGGTTCTCTTGCTACAAGAATTTGACTTACATATCACTGATAAGAAAGGAGCTGAGAACCCCATAGCTGAT	scaffold5138	Ensembl_Plants	LTR/Gypsy	135255	136897	11147	-	.	ID=586000	repeat_name=RLG_Wilma_3B_097_H10-1	repeat_type=LTRs	sequence=TAGACTCATTAGGTGGGTTCTCTTGCTACAAGAATTTGACTTACATATCACTGATAAGAAAGGAGCTGAGAACCCCATAGCTGATAACTAGTCTAGGTTAGAAAATATTCTTGATAACTGACTACCTATTGATGACAGTTTCCCTAATGAACAACTAGCTGTCATAAATGCTTCTGATAGTACTCCTTGGTATGCTAACTATGCTAATTACATTGTTGCTAAATTTATACCACCTAGTTTCACATACCAACAAAAGAATAAGAATTCTTCTATGACTTAAGACATTACTTTTGGGATGACCCACATCTTTATAAATAATGAGTAGGTGGTATTATTAGACGTTGTGTACCTGAGCATGAATAGGAAAAAATCCTTCATAAGTGTCACTCTAAAGCCTACGGGGGGCATCATGCGGGAAATAGAACTTCACATAAGTTGTTACAATCTGGTTTTCATTGGCCTACTCTTTTTAAGGATACTCGTAAGTTTTTCTTGAATTGTGATCAATGTCAAAGAATTTGTAATATTGGTAAGCGTCAGGAAATGCCTGTGAATTATTAACTTGTTGTTGAACCTTTTGATGTTAGGAGCTTTGATTATATGGGACATTTACCCTCCTCTAATGGGTATACACATATTTTGGTTGCTGTTGATTATGTCACTATGTGGGTAGAAGCTACCCAACTAGTAGTGCTGATCATAACACCTCCATTAAAATGCTTAAAGAAATTATCTTCCAGAGGTTTGGAGTCCCTAGATATTTAATGACTAATGGTGGTTCACATTTTATTCATGGTGCCTTTCGTAAATTGCTTGCTAAGTATGATGTCAACCATAGAATTGCATCACCCTCTCATCCTCAATCTTGTAGTCAAGTTGACCTTAGCAATAGAGAAATAAAATTAATATTACAAAAAACTATCAATATGTCCCGAAAGAATTGGTCTAAGAAACTTGATGATGCACTTTTGGCCTATATATAACAGCTTATGAAAATCCTATGGGTATGTCTCCGTATAAAATGGTTTATGGAAAAGCTTGTCATTTGCCTCTTGAGTTAGAACATAAAGCATATTGGGAAATTAAAGAACTCAATTATGATTTCAAACTTGTTGGTGAAAAGAGGTTATTTGATATTAGCTCACTAGATGAATGGAGAACCCAAGCTTATGAAAATGCTAAACTATTTGAAGAAAAAGTTAAAAGATGGCATGACAAAAGAATCCAAAAGCGGGAATTCAAAGTTGGTGAACATGTTCTATTGTACAATTCTCGTTTTAGATTTTTTGCAGGAAAACTTCTTTCCAAATGGGAAGGACCATATATCATTGAAGAAATTTATCGCTCTAGAGCTATCAAGATTAATAATGCAGAAGCTACCAACCCGAAGGTGGTCAATGGACAAAGAGTTAAACACTATATTTCAGGTACACCTATTAATGTTGATACTAACATTACCCAAACCATGACACCGGAGGAACACATAAAAGAAACCTTCTAGAACACTTCAGAACCCTGAAAAGGAAGAGGTGCATGATATGGTAAGCAAACGGTCTCCGAAAAATCCGCAAAAATATTTTCTATTAGTTTTGGAAAATTAGAAAAAACAAACAAATAAGAAACAACCGGGAAGGCAACCCAG
scaffold46362	Ensembl_Plants	rRNA	51305	52435	.	+	.	ID=gene:ENSRNA049477094	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TATTCCCTCTCATTTAACTTTCGAAAGTTTCGAACTCACTCACTTTCAGACAATCAATCAAACAATCAATCAATCTATCTATTTATTATAACATTCCAAAATTTAGAATTTTGGGATGATACATACTCGGATAACCGTAGTAATTCTAGCGCTAATACATGCAACAAACCCCGACTTCTGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTTCTCGCTGATCCGATGATTCATGATAACTTGACGGATCGCACGGCCTTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGTGCATTAGTGTCTTGTAATTGGAACGAGTACAATCTAAACCCCTTAACGAGGATCCATTAGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACGGCGAGCACCGACCTACTCGACCCTTCAGCCGGCATCGTGCTCCTAGCCTTAAGTGGTTGGGTCGTGTTTCCGGCATCGTTACTTTGAAGAAATTAGAGTGCTCAAACCAAGCCATCGCTCTGTATACATTAGCATGGGATAACATCATTGGATTCCGGTCCTATTGTGTTGTCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTTGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCCAGAACGAAAGTTGGGGGCTCGAAGACGATCAGAAACCGTCCTAGTCTCAACCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGAGCTGATGTCAAAGGAGTTATTCTTCACAATATTTCTCCGTGAAAAACCAATATCAGCAAATTGATTATGA	scaffold46362	Ensembl_Plants	LTR/Gypsy	51121	51427	1650	-	.	ID=1284170	repeat_name=trep1312	repeat_type=LTRs	sequence=TGTATCATCCCAAAATTCTAAATTTTGGAATGTTATAATAAATAGATAGATTGATTGATTGTTTGATTGATTGTCTGAAAGTGAGTGAGTTCGAAACTTTCGAAAGTTAAATGAGAGGGAATAAAAGGACTTTCCCAAACTTTCATATTTGCTTTTATGATCTCCATGAATTCAAAATCTTTTCAACACAAAACCCTAGAGAGAAGATGACATGACTTCTTCAAATTATATGAAATATGAGTTGGGAGTTTCAAAGAATTAAATTCAAAGTTCTTCTGAATTTATTTTCAATTTGGAATGTTATAC
scaffold46362	Ensembl_Plants	rRNA	51305	52435	.	+	.	ID=gene:ENSRNA049477094	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TATTCCCTCTCATTTAACTTTCGAAAGTTTCGAACTCACTCACTTTCAGACAATCAATCAAACAATCAATCAATCTATCTATTTATTATAACATTCCAAAATTTAGAATTTTGGGATGATACATACTCGGATAACCGTAGTAATTCTAGCGCTAATACATGCAACAAACCCCGACTTCTGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTTCTCGCTGATCCGATGATTCATGATAACTTGACGGATCGCACGGCCTTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGTGCATTAGTGTCTTGTAATTGGAACGAGTACAATCTAAACCCCTTAACGAGGATCCATTAGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACGGCGAGCACCGACCTACTCGACCCTTCAGCCGGCATCGTGCTCCTAGCCTTAAGTGGTTGGGTCGTGTTTCCGGCATCGTTACTTTGAAGAAATTAGAGTGCTCAAACCAAGCCATCGCTCTGTATACATTAGCATGGGATAACATCATTGGATTCCGGTCCTATTGTGTTGTCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTTGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCCAGAACGAAAGTTGGGGGCTCGAAGACGATCAGAAACCGTCCTAGTCTCAACCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGAGCTGATGTCAAAGGAGTTATTCTTCACAATATTTCTCCGTGAAAAACCAATATCAGCAAATTGATTATGA	scaffold46362	Ensembl_Plants	LTR	52360	52983	2466	+	.	ID=1813635	repeat_name=LTR_BB_64	repeat_type=LTRs	sequence=TGGGAGCTGATGTCAAAGGAGTTATTCTTCACAATATTTCTCCGTGAAAAACCAATATCAGCAAATTGATTATGAAACTGGTCTACTGACTCGGATTTTACAGAAGAAGGAAGTGACAAGGAGTTAAGGATGACCAGGATCAGTTTAACATGGATAAATCCAAATTAAACTGGGGGCTAATGTCGGGGATATACCCCGCGGTATGATCCGGCCGGATTTATAACCCGGCTGGGACTTAGTAAAGCGGCAGGTGTTAAGGCAGGTGGTAAACCGGTTGGTGTTAAGTCAGACGGTAAACCGGCAGGTTGTTAAACCGGCTGACAGTTACGACAGACAGGTAAAACAGACAGTTAACACAGACGGTAAACTGGCCGGTTGTTAAACCGGCTGACAGTTAAGACAGGAGTTAAGTCAGATGATAACTCAGCACACATTCTTAAACCGGCAGACCATCTTAAACCGGCGCCAGTTAACTCCTGACAGGCGGTGGTAACTGGGTTGCCAGGAGTTATGAAGCCTGAGACGTTATGAAGCCCGAGACGTTATGAAGCCCAAGATGTTAAGAAGCCCATGAAGAGAAGCCAGAATAGTTAAATCTTAAGTCCGAGTTGGACTCTACATGT
scaffold4755	Ensembl_Plants	rRNA	18846	18965	.	-	.	ID=gene:ENSRNA049478475	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AGTTCTCGAAGACGATCAGATACCGTCCTAGTCTCAACTATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGT	scaffold4755	Ensembl_Plants	DNA/En-Spm	18962	21946	13190	-	.	ID=1922247	repeat_name=trep4085	repeat_type=Type II Transposons	sequence=TTGAACATATCGCATTTGTTGTTATTTTTTTAGTTAAAGCAATTATTCTCGCATCGACCTCGACCATGCCTATCCCGCATCCTCATCGTCGACTCGGCGGAGGAGGCCTGCTTGATCAGAGGGGCCATGTCCGGGACTGGGCTCCGCCGGGCTGGTACTGGGAGGTGCTACCTTCCGGGGGACGCAGCTTGGTGAGGAGTCAGCCCATCGTTGACCCGAACGTTTTTTGATGGCGGTCGCGTGGGCCAGTGATGGTGCGGAGGCTTGAGGACCCCGCGGAGGTGGTACGTCACCGTGTCAGCGAGGAGGACGAGCACGTCCGTCGCTACATGGTTGCGTTGGAGGGCAGGTTCGACAATACCTGGCAGGTTCTTCAGGGATCTCACTGGAGCTATGATCCTATGATGGTTCCTTCTCATTGGGCGTCCACCACCCGCGTCGATACCCGTCGTTCGCTAGGGTTTTAGTTGTATTAGTGATGTTATATGTATGATACTATTCGAGATGTATTAGTGATAATATTCGACGATGTACAGACGCAAGAGATGATTTAGTTTTGCTTATTGAATGCATGCTAATTTGAATACTTATATATTTTACGATTTGGTTTTGCTTATTGAATGCTCATGTCAATATGAGTCCTATAAGATATGTTGAAATGTATATCTTGTGTTGCTCAAATAGGGTATGTGCTTTCCCAAGTGGCCGGTCATGTTTGCAGGTTAGTGGCCTATGTTTTGCCGGAGTGTTGATTAATTTCTGTTTCGGCAAATTTCAGGCGCTCGATATGTCCTTTTTTAGCAAAGGTCATGCCGGATTTTTTCATGAATTTTGGCATGACTTGTGCTAGAATATGTAGGAAATATCGAGTGGCCTGGATTTTCTAGAAAGATAATTAAACGACATTTCAGGTTGACTTTGAGTCTGTCGAGGCTCCATACATGACAATGAGTGAGGGAGAAAGTCTGCACCATATATAAGAGAAGAAGAATCCCGACTGTTATCGTGGGGGTCATTTTTCCTTCTTGTCCTTGTGCTAGACCTTTGTTATGCACTAGGGGAAGGAGGAATAACGAACATCACCGACGGTCGAAAAATCAGTGAGGGATTGTGTCCACCATATATGAGAGAGGACGAAGAATCCTGACTGTTGTCGTGGGGGTCGTTTCTCCTTCTTCTCCTTGTGCTAGACCTTTGTTATGCACTAGGGGAAGGAGGAGTAACGACCATCACCGACGGTCGCAAATGTCAGAGAGGAATCAGTGAGGGAGAGTCTCCATCATATATGAGAGGACGAAAAATCCCGACTGTTGTCGTGGAGGTCGACTCTTTTTGTTCCCGTGTGCTAGACATTTTGGTGTAATGCACTCGGGGACGAAAGGAGGAGCGACCATCACCAACGGTCGAATGTATACACCACGTGAGATGAGAGTTTTCCAGAAAAGTCTCGACAGACCGATAGTCAACCCGTGATGAATAATAATGATCTTATTTAGTTTTTGTAGTACATATATTTAATTGTACAAGTTTAATGTTTGAATTATGAACATAGGAAATGTCGTCGATGTCATCGTCGGACGACGGAAGTCTCCCGGCGGAGTGCGAATGGTGCGGCGACGACCGGGGTCGATGCGACAGGCCTCAGCTGGTAGAAGGTCGGCGCTTCAGCATTAAGCTCCAGGAGACTTTCAATGTTGAAATGGTACGCAACGACGACAAATATTTTTTTCATAATTAAGCACGACTTCTGCTTCTTCAACATGTAATTTTCGTCTTTTACAATTCCTAGCTAATCCCATGTCATGCAAGACGCTATGTCTTGGAGAGGATGGATTTTGAAAAATCATGAAAGTATGGAAACAAAGATAACACCTAAGGATCCATCATGGTATGGATTCTGATGTAAATATATACAATTATGAGAGCGTAACCCATTTTGGTTGCCTGAATTGGAAAGCAATTTGCAAGATGTATGCTTTTCATGAGGGTATGCTTGTCACCATGGATCTTGTGATCCTAACATCGCCGAAGACAATATGGACATTTGGGTCCTTGTTGATATGCTTCCAATTCTATCGCTATGTGAGTTTCTCAAATATATTTATTAAGTAATTTATATTATTTATTTCAAAATAGTTGACATCTTATTTCCATTGGTAGCTTATTTTCATTCTTCAAAGAATGTGCGGAAGATGGTAGACAGAACCTACTACACCGATGGCTCAGAATTAACTTATCAGGAGAAAAATCATCTGATCTCATTTATTAATGATCTTGAGAATTACAATATCTATTATCAAACTCCTCCACATTATGATCAATACATGCCACTAATGCATGTGTTGAACTATGGTAACATCCATGGAAATGTCATGGTAAGATTTTTTACTATTACGACATCCGTGCATCTTTTGTATAAATTCTTCTAAAACTCAACTACATTGCTAACTACGAAGTCATTACTATGTTTTTCAACAGAAAATCCTGAAGGATTGTGTGCCTCATCTGATGTTTCCGAAAGGTCGCCTTGATGTTATGAACTTACGGCCAGGTCATCCTACGCATCACTGATGTTCATACCGGATTTCTAAAACCGATGAAGACATGACAATAAAAAATTGGAAAAAATGTATAGTCAATCATAGGGAGCTACTTGGAAGCAACATTGTGCGAAGCGCAAGAATTGGAGACATGATAATCTCTATTCTCCATAATGGAGAGTCAGGCCTATCTTGTTTTATGCTATTTTTAACTTAGAGAGGGTATTTAGGTCCTAGCTAATACTCATGATCATGTGCTAAGAACAATTAAGTAGGGTTGGTTAGATGACTATGATGATGATGAGTATGACTTGTTATTATGACAACGAGTAGAAGTTGTATGATGATGATGAGTAGGACTTGTTATTATGATACCAATGATGAGTTATTTATTATTATGATCGATGATGCATGATGCTAAGTTGTTATATGAGCATAATGAGT
scaffold59886	Ensembl_Plants	rRNA	19195	19297	.	+	.	ID=gene:ENSRNA049476309	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AACCCACTCTTATGGAGATGAAACCCAAAAGATCTTGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTT	scaffold59886	Ensembl_Plants	LTR	19292	19337	327	-	.	ID=2223863	repeat_name=LTR_AC191802.2_8450	repeat_type=LTRs	sequence=AAGCCTTTTATCCCAAACAAGTTGGGGTAGGCTAGATATGAAACC
Pt	Ensembl_Plants	rRNA	100050	100166	.	+	.	ID=gene:ENSRNA049476178	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=TCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAA	Pt	Ensembl_Plants	LTR/Gypsy	100022	100248	1944	-	.	ID=826646	repeat_name=sabrina_115G1-1	repeat_type=LTRs	sequence=GACCTTTGCATTTTAGATTTGGATCTTTTTCTTATTTCAAAATAGTGAAAAAGTAAAATAAGAGGTGTTAAGCTTTTTATCATTCTGGCATCGAGCTATTTTGCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAGGAAAGGCA
scaffold7104	Ensembl_Plants	rRNA	87459	87575	.	+	.	ID=gene:ENSRNA049478348	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=TCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACAATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGATGCCAGAA	scaffold7104	Ensembl_Plants	LTR/Gypsy	87431	87657	1946	-	.	ID=826402	repeat_name=sabrina_115G1-1	repeat_type=LTRs	sequence=GACCTTTCCATTTTAGATTTGGATCTTTTTCTTATTTGAAAATAGTGAAAAAGTCAAATAAGAGGTGTTAAACTTTTTATCATTCTGGCATCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATTGTCACCGCAGTAGAGTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAGGAAAGGCA
scaffold3049	Ensembl_Plants	rRNA	167562	168993	.	+	.	ID=gene:ENSRNA049478040	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TACTTTTTTATTTTTAATAATGTTAATAACATTAATTACCTCAGGTAGTTTAAAGGGTGCTTTTGTCCTGAATGCAAATGATATGCACATAAAGGTAATGTTTATCTGAACATTTTGATATCTTATTTGCATTTTTTGAGTTCTTATGAATTAGTTATGAATTTTCAAAGTTTTGGTCAAATGGTCAAAGGGCATTCGAGGGACCTCGACGGAAAAAGTAAGGGCAAAACTGAGCAATCTCGAAAAGTAAGGGAGGAATCAACTAGGGGAAAAAATGAAATTGTCCCCATAAGTAAAGTTGACAAAAACTAGAGTGGCAAAAACAAAGTTTTCCCTTCCGTAATGCATCATCCCGTGACTAACTCATTAGTCACATTGCTTGCAAGGCTCATAGTGATGTGCATTACCGAGAGGGCCCAAAGATACCTCTCTGATACATGGAGTGACAAATCCTAATCTTGATCTATGCTGACTCAACAAACACCATCGGAGACACTTGTAGAGCATCTTTATAATTGAAAGTGCGTTATATCGACTAGAGGGGGGTGAATAGGTGATTTTTATGAAAGTCTTCAAAATGGAGTGATGAAATGCATTGAGATCGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCCTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACTATGAGTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGAGACACACGTGCTACAATGGGCGGGACAAAGGGTCGCGATCTCACGAGGGTGAGCTAACTCCAAAAACCCGTCCTTAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGACAGTGAATCCGTCCCCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTAGCCATGTTTGAAGTCATTACCCTTAACCGTAAGGAGGGGGATGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGTCGTAACAAGGTAGCTGTACTGGAAGGTGCGGCTGGATCACCT	scaffold3049	Ensembl_Plants	LTR/Copia	167897	168077	1520	-	.	ID=140021	repeat_name=LTR_AC200842.1_90	repeat_type=LTRs	sequence=ATTATAAAGATGCTCTACAAGTGTCTCCGATGGTGTTTGTTGAGTCAGCATAGATCAAGATTAGGATTTGTCACTCCATGTATCAGAGAGGTATCTTTGGGCCCTCTCGGTAATGCACATCACTATGAGCCTTGCAAGCAATGTGACTAATGAGTTAGTCACGGGATGATGCATTACGGA
scaffold4136	Ensembl_Plants	rRNA	43704	43824	.	+	.	ID=gene:ENSRNA049477499	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGTGATCATACTAGCACTAAAGCACCGGACCCTATCAGAACTCCGAAGTGAAGTGTTCTTGGGCACTAGTAGTACTAGGATGGGTGACCTCCTGCGAAGTCCTTGTCGGTGTCAAAAC	scaffold4136	Ensembl_Plants	LTR/Gypsy	43810	45897	14293	-	.	ID=366167	repeat_name=RLG_Fatima_3B_061_J17-5	repeat_type=LTRs	sequence=ATACGTGTGCGGTGGGTGAAGTGCGAAAAAGGGGATTCTTTTCGGAAGTTGGGACTCCGGTGTTACTTACATGCGATGCAGGGAGCAGTCCAGGATAATCGGCGGTGATGGCCACCAAGGCACCGTCGCAGCTTAACTGATAAAACGTCCTGTCGATGAGATCCACGAATATGTTCGGATCTTCTTCGAGTCCGGGATCGAGGGCCCGATCAGGGTCCTTTGCCTGTGGAGATGGGTTGTGAATCTCCCTCACAACTTTTCGTAGTTCCTGCTATGAAATAGCGAGGTAAATATTTATGACAAAGAAAGCGGGAAGGTTTGGAGTAAAAAGCAGCAGCTCACCCAGTTTGGGGGGTTGTACATGGAGAATCCATCCCGCGGCTTAATACGGATGAACTCCTCTTCCTCTCCCTTATATAAATCGGACAGTATTTTCGCCAGAGCGGCGGCGGAGTCCGGACCTTTACGGCCACAGCGGGTGGCATCGTTTTCTCCATTGAAGTGCCACATGGGTTGTCCCCGATATTGAAGTGGTCGCACCCCCCGCATTATACATATTGACATGACCTCGATTATTGTCAGTCCTGATTCGGCCAGTATCTTTATCCGGCTCATCAGGTAAAGGACCTCTCTGTTATCTTCCTCCCGGGGGCTCCGAGGGCGCCGGCTATGGCGTTTCTTCAAAGGGGCATTGTTGAACTCAGGAAGGCCTATCCGAATAGGGTATGGAAGGGGAACGTCCTCCATATAAAACCACTCCGAAGGCCAGTCTTCGGATGTCTTCTTCGGAGTACTGGACAGGTATCCGGTCCCGGCGATGCGCCATGTTTCGGCTCCACCCACTTGAAATATTGACCCCTTTCTATGTACGGGGCACGAGGAAGATAGCCTCTTCCATAACTCGAAATGAGCTTCGCAGCCCACAAACAGCTCACAAAGGGCAATGTAGCCTGCGATGTGTAGTATGGAGGCGGGAGTGAAGTTATGCAGCTGGAGGCCATAGAACTCCAGGAGCCCATGAAGGAATGGATGGATTGGAAATTTGAGTCCCCTCAATAAATAGGGGACGAGGCATACCCGCTCCCCTGTGGATGGGTTGGGAAAGCTTTTCGCTTGCTCCACACCATTATAAGTGGCTAGTCCGGCTCGGACGGGGACCATGTATGCAGGAGGGAGAAACCCCTGGGTCTGCAACTCTACTAGTTGGCTATGGGGAATAGAACACTTCTCCCAACTACCTGGCTTAGGGCTACGGGGGCGAGAGGAGGAGCTGCGGTGGCCGGCCATGGTGGGATGGATTTTTCCGGGCACGCTCCGATGGATACTCGCTGTGGGAAGGTGGTATGATCTAGATCTGAAGATCCCCGACTGTTTAAATAGACAATTCATCTACCTGGTTAGGGTGGTAAATGTAAAAACACCCCGACCTCTCGCATTCACTCAACACATGGAAGATAGCCATTATTAAGGCACAGAAGCCGAGGAGTGCAACATTCATGGGAGGCCGGACACAACTTGTACGACAGGTACTCGGGATTTGGAGGAGAACCCGCCTTGCAATGCCGAAAACAATCTGTGCGCCAGACTCATCGTCATTGAAGCCTAGTTCGGGGGCTACTGAGGGAGTCCTAGATTAGGGGGTCCGCGGACAGCCGGACTATGTACTTTGGCCGGACTGTTGGACTATGAAGATACAAGATTGAAGACTTCGTCCCGTGTCCGGATGGGACTCTCCTTTGCGTGGAAGGCAAGCTTGGCGATTCGGATATGTAGATCTCCTCCCTTGTAACCGACTCTGTGTAACCCTAGCCCCTCCGGTGTCTATATAAACCGGAGGGTTTTAGTCCGTAGGACAACAACAATCATACCATAGGCTAGCTTCTAGGGTTTAGCCTCTCCGATCTCGTGGTACATCAACTCTTGTAATACTCATATCACCAAGATCAATCAAGCAGGAAGTAGGGTATTACCTCCATCGAGAGGGCCCGAACCTGCGTAAACATTGTGTCCCATGCCTCCTGTTACCATCCGCCTTAGACGCACAGTTCGGGACCCCCTACCCGAGATCCGCCGGTTTTGACACCGAC
scaffold46362	Ensembl_Plants	rRNA	61337	62062	.	+	.	ID=gene:ENSRNA049477100	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GACATCTGCCATGACAATTCCATGACAGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACAGAAGGGCTACACAGGGCGTAGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGTTCCAAACATAACAAGGATTGACAGACTGAGAGATCTTTATTGATTCTCTGGGTGGTGGTGCATGTCCGTTCTTAGTTGGTGGAGCGATTTGTTTGGTTAATTCCGTTAATGAACAAGACCTGAGCCTACTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTACAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGACTGAATGGCCCGGTGAAGTGTTCTGATCGCGGAGACGGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCATAGGTGAACCTGCGGAAGGATCATTG	scaffold46362	Ensembl_Plants	LTR	58921	61363	14464	+	.	ID=1813639	repeat_name=LTR_BB_64	repeat_type=LTRs	sequence=TCACTTGGGGGCTCTGGTCGTATCTGAACCATAGCTACAACTCTTGATAAGTATAAGGGTGCCAGGAAAATCACTTCGGGGCTTGGTCGTATCCAAACCATAGCTACACCTCTTGATAGGCATAAGGCCATCAGGGAAATCACTTGGGGGCTATGGTTCGAATCATAGTTGCACCTCTTGATAGGCATAAGGGCACTAGGGATATCACTTTGGGGCTTGGTCGTATTGGAACCACAGCTACACCTCTTGATCGGCGCAATGCCATAATTATGACTACGTGGGGGCTCTGGTCGTATCCGAACCATAGCTTAAACCCTCTTGATCATACATATACATAATCATATATTGCATCATACATTGCATCATCATTACATCATCATAGCATGTATCATATGTGCATGGATATACCGGTTTATATGGCAGGAATCGGTTTTCAAACCAAGTTATATTATTCAAAAATTTTAATAGCCAACACGGCTGGATTTTATTATGGTTATCAATAGCTACTATTATGATTAGGGTTTTCAAAGTCGCTTTAGCGCAATGACTATCATATTATCAGTGGATATGATTTATTCTACAATTGAAGGAATAGTCCCGAGTCGCTGCAGGCTTACGACCCGGCACTTGGGGGCTACATTATTCAAGTTGGGATTACATCAAATACACAAGTCTCATGTCACTGCAAACATGCACCATGACACTTTGGGGCTAATGCAAAGTCATTGTTTGCTCACTTATTGAAGACCCGACTCATCATATCATAATGAGCCGGCCCTTGGGGGCTACCAATTGCTCCTATCAACAATTCAAGGTACACAAATTTTCATCTATTATTGAAGGATCCACTGCTCAGTTGGTAAAGCACAAGGCTCTTAACCTTGTGGACGTAGGTTCAAGCCCCATGATGAGGGTTACATCATATGATGTTATTTTCATTGAAGAATATATCAAGTCCCAGCTCAATATTATCTTATTGAGCCGGCCCTTGGGGGCTACACATTGCTGCTCAAGTTTACATGATCATATTTACAAAGTCTCTGGTCATTATTGCATAATAACCAAGCCCTTGGGGCTACACTGGTTGAAGTTTTTATAAGCATAAAGGCAATTTCAAGTCCAAGGTTGCTGCAAGCATGACAACCCGACACTTGGGGGCTACATATGTGGAATACTCAGTTCTGACTGGTGATTGAGTTGAACAAACTGGATTTCTTCAAGCTTGTACATTCATATTGAAGCAAGTCTTAAGATGTTGCTATGCTACCTTCTTAAGACTTGGGGGCTACAAGTGATAGGCATATAAGAGGTATATTTTCAAAACTGATGTTAACAAACAGTTCTGATCCGGTGCCATCAATATTCTTAAACTGGCAATATTGGCAATGGTAAACCAGTAATGTTTCACATTCTTAAACTGGCAAGTTCTACATTCTTAAACCGGCTGAAGATCAAATGAGTATTTCAAAGGCCAATATTTTTGTTAAAGCATTGGGAGCTGAAGTCAAAGGAGTTATTCTTCACAATATTTCTTTGTGACAAACCAATATCAGCAAATTGATTCTAAAACTGTCTATTGACTTGGATTTTACAGAAGAAGGAAGTGACAAGGACTTAAGGATGACCAGGATCAGTTTAACCTGGATAAATCCAAATTAAACTGGGGGCTAATGTTGGGGATATACCCCGCGGTATGATCCGGACGGAGTTATAACCCGGCTGGGACTTAGTAAACCGGCAGGTGTTAAGGCAGGTGGTAAACCGGTTGGTGTTAAGTCAGACGGTAAACCGGCAGGTTGTTAAACCGACTGACAGTTACGACAGACAGGTAAAACAGACAGTTAACCCAGACGGTAAACCAGCCGGTTGTTAAACCGGCTGACAGTTAAGACAGGAGTTAAGTCAGATGATAACTCAACAAACATTCTTAAACAGGCAGAGCATCTTAAACCGGCACCAGTTAACTCCCGACAGGCGGTGGTAACTGGGTTGCCAGGAGTTATGAAGCCCGAGATGTTATGAAGCCCGAGACGTTATGAAGCCCAAGATGTTAAGAAGCCCATGAAGAGAAGCCAGAATAGTTAAGTCTAAAGTCCGAGTTGGACTCTACATGTAACCCACCCCTTCAATTTATATAAGGAGGGGCAGGGCTCCCCAAAGAGGGACAAGGAAGAAGAAACAATCTTAAAGGGTTAAGGTTAAATGGGAGACCGGTTTACGGCGACTTCCTCATGATCACAATGAGAGGTAGCCACAAACAGCATGTAGGGTTGTTACTGGATGATGTTTCCCGGGGCCCGAAGCTGTCTAAATCCTTGTCTTCTGTGTTGATACGCCATGCACTCTCGATTCCGACCGACCCCTTCAAGCTACCGCATAGAAGCGTTGGCCTCACGACTAAAGTCCTCACACTAGGACATCTGCCATGACAATTCCATGACA
scaffold46362	Ensembl_Plants	rRNA	64435	65882	.	+	.	ID=gene:ENSRNA049477085	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TTGAACAATGTAGGCAAGGGAAGTCGGCAAAACAGATCCGTAACTTCGGGAAAATGATATGCTCTAAGGACTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGTCGGCGGATTGCTCGAGCTGCTCACGCGGTTTCGAGGATATACCCCACGGCGTAAGCCGGTCGGAAGTATAACCCGGCCGGACTTGGCGGTTTACTTGAGACCCGGTTGAGACTTGACGATTCACTGGCGACCTGTTTGGACCTGGTGGTTTACGATTCATTGGTAATCCGGTAGGCGGGTCAGAGGAGCGACAAGACCCAGTGGCCCAATGGGCGGTTCATGAAGGCCGGTTCATACTATGCTGGGCCGGTTTAAGAGGAAAGGCATGACGAATATTTACCTTAAAGGAGTTAAGACCAGGACTTGTATCCGGTTTGTATTAGAGATAGACTAGTCCTAATCCTAATAGGACTCCACCTGTAACCCATCCCTTCAACAAATATAAGGAGGGCAGGGCTCCCCAAAGAGGACTAGCTACAAGCGACAAGAAGAAGAAAATAATCTCTAGGGGTAGACACAAAGAGCCGGCTTACCGACGACTCCCTCATGATCATAATGAGATCTAGCCACAAACAACATGTAGGGTTATTACAGGATGATGTTTCCCAGGCCCGAAGCTGTCTAAACCCTTGTCTTGTATTGCGTCTTTCGATTCCGCTCAACCCCTCTCAAGCTACAACATAGATGCATTGGCCTCGCGACTAAGTCCTCACACTAAGGACATCTGCCGTGACATCTGAGTGGCGGCTCAGGGCGATGTGGTCTTAACTCCTTGTAAGGTAAATATTCGTCATGCCTTTCCTCTTAAACCGGCCCACCATAGTATGAACCGGCCTTCATGAACCGCCTGTTGAGCCATCGGGTCTTGTTGCTCCTCTTACCCGCCTACTGGATTACCAATGAACCGTAAACCGCCAAGTCCAAATGGGTCGCCAGTGAATCATCAAGTCTCAGCCGGGTCTCAAGTAAACCGCCAAGTCCGACCGGGTTATACTTCCGACCGGCTTACGCCTTGGGGTATATCCCCGACACGCGCCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAATCGCCCCTTTGGGGGCTTTCCCCGAGCATGAAACAGTCGACTCAGAACTAGTACGGACAAGGGGAATCTGACTATTTAATTGAAACAAAGCATTGCGATGGTCCTCGCGGATGCCGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGTGCGGGTAAACGACGGGAGTAACTATGGCTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGATGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCACCGAAACCACAGCCAAGGGAATGGGCTTGG	scaffold46362	Ensembl_Plants	LTR	64573	64628	314	+	.	ID=1813640	repeat_name=LTR_BB_64	repeat_type=LTRs	sequence=CGAGGATATACCCCACGGCGTAAGCCGGTCGGAAGTATAACCCGGCCGGACTTGG
scaffold46362	Ensembl_Plants	rRNA	64435	65882	.	+	.	ID=gene:ENSRNA049477085	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TTGAACAATGTAGGCAAGGGAAGTCGGCAAAACAGATCCGTAACTTCGGGAAAATGATATGCTCTAAGGACTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGTCGGCGGATTGCTCGAGCTGCTCACGCGGTTTCGAGGATATACCCCACGGCGTAAGCCGGTCGGAAGTATAACCCGGCCGGACTTGGCGGTTTACTTGAGACCCGGTTGAGACTTGACGATTCACTGGCGACCTGTTTGGACCTGGTGGTTTACGATTCATTGGTAATCCGGTAGGCGGGTCAGAGGAGCGACAAGACCCAGTGGCCCAATGGGCGGTTCATGAAGGCCGGTTCATACTATGCTGGGCCGGTTTAAGAGGAAAGGCATGACGAATATTTACCTTAAAGGAGTTAAGACCAGGACTTGTATCCGGTTTGTATTAGAGATAGACTAGTCCTAATCCTAATAGGACTCCACCTGTAACCCATCCCTTCAACAAATATAAGGAGGGCAGGGCTCCCCAAAGAGGACTAGCTACAAGCGACAAGAAGAAGAAAATAATCTCTAGGGGTAGACACAAAGAGCCGGCTTACCGACGACTCCCTCATGATCATAATGAGATCTAGCCACAAACAACATGTAGGGTTATTACAGGATGATGTTTCCCAGGCCCGAAGCTGTCTAAACCCTTGTCTTGTATTGCGTCTTTCGATTCCGCTCAACCCCTCTCAAGCTACAACATAGATGCATTGGCCTCGCGACTAAGTCCTCACACTAAGGACATCTGCCGTGACATCTGAGTGGCGGCTCAGGGCGATGTGGTCTTAACTCCTTGTAAGGTAAATATTCGTCATGCCTTTCCTCTTAAACCGGCCCACCATAGTATGAACCGGCCTTCATGAACCGCCTGTTGAGCCATCGGGTCTTGTTGCTCCTCTTACCCGCCTACTGGATTACCAATGAACCGTAAACCGCCAAGTCCAAATGGGTCGCCAGTGAATCATCAAGTCTCAGCCGGGTCTCAAGTAAACCGCCAAGTCCGACCGGGTTATACTTCCGACCGGCTTACGCCTTGGGGTATATCCCCGACACGCGCCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAATCGCCCCTTTGGGGGCTTTCCCCGAGCATGAAACAGTCGACTCAGAACTAGTACGGACAAGGGGAATCTGACTATTTAATTGAAACAAAGCATTGCGATGGTCCTCGCGGATGCCGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGTGCGGGTAAACGACGGGAGTAACTATGGCTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGATGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCACCGAAACCACAGCCAAGGGAATGGGCTTGG	scaffold46362	Ensembl_Plants	LTR	64875	65220	1523	+	.	ID=1813641	repeat_name=LTR_BB_64	repeat_type=LTRs	sequence=GTCCTAATCCTAATAGGACTCCACCTGTAACCCATCCCTTCAACAAATATAAGGAGGGCAGGGCTCCCCAAAGAGGACTAGCTACAAGCGACAAGAAGAAGAAAATAATCTCTAGGGGTAGACACAAAGAGCCGGCTTACCGACGACTCCCTCATGATCATAATGAGATCTAGCCACAAACAACATGTAGGGTTATTACAGGATGATGTTTCCCAGGCCCGAAGCTGTCTAAACCCTTGTCTTGTATTGCGTCTTTCGATTCCGCTCAACCCCTCTCAAGCTACAACATAGATGCATTGGCCTCGCGACTAAGTCCTCACACTAAGGACATCTGCCGTGACATCT
scaffold46362	Ensembl_Plants	rRNA	64435	65882	.	+	.	ID=gene:ENSRNA049477085	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TTGAACAATGTAGGCAAGGGAAGTCGGCAAAACAGATCCGTAACTTCGGGAAAATGATATGCTCTAAGGACTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGTCGGCGGATTGCTCGAGCTGCTCACGCGGTTTCGAGGATATACCCCACGGCGTAAGCCGGTCGGAAGTATAACCCGGCCGGACTTGGCGGTTTACTTGAGACCCGGTTGAGACTTGACGATTCACTGGCGACCTGTTTGGACCTGGTGGTTTACGATTCATTGGTAATCCGGTAGGCGGGTCAGAGGAGCGACAAGACCCAGTGGCCCAATGGGCGGTTCATGAAGGCCGGTTCATACTATGCTGGGCCGGTTTAAGAGGAAAGGCATGACGAATATTTACCTTAAAGGAGTTAAGACCAGGACTTGTATCCGGTTTGTATTAGAGATAGACTAGTCCTAATCCTAATAGGACTCCACCTGTAACCCATCCCTTCAACAAATATAAGGAGGGCAGGGCTCCCCAAAGAGGACTAGCTACAAGCGACAAGAAGAAGAAAATAATCTCTAGGGGTAGACACAAAGAGCCGGCTTACCGACGACTCCCTCATGATCATAATGAGATCTAGCCACAAACAACATGTAGGGTTATTACAGGATGATGTTTCCCAGGCCCGAAGCTGTCTAAACCCTTGTCTTGTATTGCGTCTTTCGATTCCGCTCAACCCCTCTCAAGCTACAACATAGATGCATTGGCCTCGCGACTAAGTCCTCACACTAAGGACATCTGCCGTGACATCTGAGTGGCGGCTCAGGGCGATGTGGTCTTAACTCCTTGTAAGGTAAATATTCGTCATGCCTTTCCTCTTAAACCGGCCCACCATAGTATGAACCGGCCTTCATGAACCGCCTGTTGAGCCATCGGGTCTTGTTGCTCCTCTTACCCGCCTACTGGATTACCAATGAACCGTAAACCGCCAAGTCCAAATGGGTCGCCAGTGAATCATCAAGTCTCAGCCGGGTCTCAAGTAAACCGCCAAGTCCGACCGGGTTATACTTCCGACCGGCTTACGCCTTGGGGTATATCCCCGACACGCGCCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAATCGCCCCTTTGGGGGCTTTCCCCGAGCATGAAACAGTCGACTCAGAACTAGTACGGACAAGGGGAATCTGACTATTTAATTGAAACAAAGCATTGCGATGGTCCTCGCGGATGCCGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGTGCGGGTAAACGACGGGAGTAACTATGGCTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGATGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCACCGAAACCACAGCCAAGGGAATGGGCTTGG	scaffold46362	Ensembl_Plants	LTR	65456	65513	318	-	.	ID=1813642	repeat_name=LTR_BB_64	repeat_type=LTRs	sequence=TGTCGGGGATATACCCCAAGGCGTAAGCCGGTCGGAAGTATAACCCGGTCGGACTTG
scaffold46362	Ensembl_Plants	rRNA	65908	66317	.	+	.	ID=gene:ENSRNA049477073	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TATTGAGATTGACTCTAGTCCGACTTTGTGGAATGACTTGAGAGGTGTAGGACAAGTGGGAGCATGTCCCCTCCTTTTGGCTCCAAGGCCCGGCTTTACCGGGCCGATCTGGGCGGAAGACATTGTCGGGTGGGGAGTTTGGCTGGGCGGCACATATGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACCAGAACAGAAATCTTGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCCTTTGTCAGTCAGGCCGCATAACAACATACGTTGTTCCCTTTGTCATCGGTATGTTACTTGCCCGAGATTCGATCGTCGGTATCCAATACCTAGTTCAATCTCGTTACCGGCAACTCTCTTTACTCATTCCGTAATACATCATCTCACAACTACCATA	scaffold46362	Ensembl_Plants	LTR	66160	66351	1644	-	.	ID=280176	repeat_name=LTR_AY146588.1_283	repeat_type=LTRs	sequence=CACATCACATAAGCCTTGCAAGCATTACAACTAATATGGTAGTTGTGAGATGATGTATTACGGAATGAGTAAAGAGAGTTGCCGGTAACGAGATTGAACTAGGTATTGGATACCGACGATCGAATCTCGGGCAAGTAACATACCGATGACAAAGGGAACAACGTATGTTGTTATGCGGCCTGACTGACAAA
scaffold8181	Ensembl_Plants	rRNA	85555	85673	.	-	.	ID=gene:ENSRNA049475599	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATACGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACATCGAAGCTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCATTCC	scaffold8181	Ensembl_Plants	LTR/Copia	85671	90092	30167	-	.	ID=135508	repeat_name=LTR_DQ537337.1_386	repeat_type=LTRs	sequence=TGCTTCTATTGCAAAGGAAATGGTCACTGAAAGCGGAACTGCCCCAAATACTTGGCGGATAAGAAGGATGGCAAAGTGAACAAAAGTATATATGATATACAAGTTATTGATGTGTACTTTAATGGTGTTCATAGTAACCCCTGGGTATTTGATACTGGTTCAGTTGCTATGATTAGTAACTTGAAACAGAAGTTACAAAATGAACAGAGACTAGTTGAAGGCGAGGTGACGATGTGTGTTGGAAGTGATTCCAAGGTTGATAAGATCACCATCGCACACTCCCTTTACCTTCGGGATTAGTGTTGAACCTAAAATAAATGTTATTTGGTGTTCGCTATGATTGGATCATGTTTATTGCAATATGGTTATTCATTTAAGTCAAAGAATAATTGTTATTCTGTTTACATGAATAAAACCTTCTATGGTCATACACCTAAGGTGAATGATTTATTGAAGCTCGATCGTAGTGATACACATATTCATGATATTGATGCCAAAAGATGCAAAGTTGATAATGATAGTGCAAAATACTAATGGCACTGCCATTTAGGTCATATTGGTGTAAAGCGCATGAAGAAACTCCATGCTGATGGGCATTTGGAATCACTTGATGCTTGCGAACCATGCCTCATGGGCAAGATGACTATGACTCCATTCTCCGGAACAATGGAGCGAGCAACAAACTTATTGGAAAAAAATACATACTGATGTATGCGATCCAACGAGTGTTGAGGCTCGCAGCGGGTATCGTTATATTCTGACCTTAATAGATGATTTGAGAAGATATGAGTATATCTACTTAATGGAACACAAGTCTTAAACGTTTGAAAAGTTCAAAGAATTTCAGAGTGAAGTGGAGAATCATCGTAGCAAGAAAATAAAGTTTCTACGATATGACCGCGGAGACGAAATATTTGAGTTACGAGTTTGGCCTTCATTTGAAACAATGTCGAATAGTTTTGCAACTCACGCCACCTGGAACACCATAGCGTAATGGTGTGTCCGAACATCATAACCATACTTTATTAGATATGGTGCAATCTATGATGTCTCTTACCGATTTACCACTATAGTTTTGGGGTTATGCATTAGAGACAGCTGCATTCACGTTATGTCTAAACATCTGTTGAGATGACACCGTATGAACTGTGGTTTAGCAAGAAACCTAAGCTGTCATTTCTTAAAGTTTGGGGTTGCGATGCTTATGTGAAAAAGTTTCAGCCTGATAAGCTCAAACCCAAATCTGAGAAGTGCGTCTTCATAGGATACCCAAAAGAAACTATTGGGTACACCTTCTATCACAGATCCGAAGGCAAGATCTTTGTTGCTAAGAGTGGATCCTTTCTAGAGAAGGAGTTTCTCTCAAAATAAGTGAGTGGGAGGAAAGTAGAACTTGATGAGGTAATTGTACCTTCTCCTGAATTGGAAAGTAGTTCATCATAGAAATCAGTTCCAGTGATGCCTACACCAATTAGTGAGGAAGTTAATGATGATGGTCATGAAGCTTCAGATCAAGTTACTACCGAACCTCGTAGGTCAAGCAGAGTACGTTCCATACCAGAGTGGTACGGTAAACCAGTTCTGGAAGTCATATCACTAGACCATGATGAACCTACAAACTATGAGGAAGCGATGATGAGCCCAGATTCCGAGAAATGGCTTAAGGCCATGAAATATGAGATGGGATCCATGTACGAGGAAAAAGTATGGACTTTGATTGACTTGCCCGATGATCGGTGAGCCATTTAGAATAAATGGATCTTCAAGAGGAAGACGAACGCTGATAGTAGTGTTAATATCTACAAAGCTCGAATTGTTGCAAAAGGTTTTCGACAAGTTCAAAGTGTTGATTACGATGAGATTTTCTCACTCGTATCAATGCTTAAAAATCTGTTTGAATCATGTTAGTGGTTGCCCAATTTTATGAAATCTGGCAAATGGATATCAAAACTACATTCCTTAATGGATTTATTAAAAAAGAGTTGTATAGGATGCAACCAATAGGTTTTGTCAATCCTAAAGATGCTAACAAAGTGTGCAAGCTCCAGCGATCCATCTATGGACTGGTGCAAGCATCTCGGAGTTGGAATATACGCTTTGATGAGTTGATCAAAGCATATAGTTTTATAAAGACTTGCGGTGAAGCCTGTATTTACAAGAAAGTGAGTGGGAGCACTATAGCCTTTCTGATAAATATATGTGAATGACATATTGTTGATTGGAAATGATGTAGAATTTTCTGGAAAGCATAAAGGAGTGTTTCAAAGGAGCTTTTCAAAGAAAAACCTCGGTAAAGCTGCTTACATATTGAGCATCAAAATCTATAGATATAGATCAAGATGCTTGGTAAGTTTTTTCAATGAGTGCATACCTTGACAAGATTTTGAAGAAGTTCAAAATGGAACAGTCAAAGAAGGAGTTCTTGTCTATGTTGCAAGGTGTGAAGTTGAGTAAAGACTCAAAACCAGACCACGGCCGAAAATAGAAAGAGAATGAAAAGTCATTCCCTATGCCTCAGTCATAGGTTCTATAAAGTATGCTATGATGTGTAGCAGACCTATTGTATACCTTAGCATGATTTTGGCAAGGGAGTACAATAGTGATCTAGGAGTAGATCACTGGACAATGGTCAAAATTATCCTTAGAGGACTAAGGAAATATTTCTCGATTATGGAGGTGATAAAACAGTTTGTCGTAAAGAGTTATGTTGATGCAAGCTTTTGACACCGATCTAGATGACTCTAAGTCTCGATCTAGATACATATTGAAAGTGGGAGCAATTAGCTAGAGTAGGTCCATGCAGAGTATTGTGGACGTAGAAAATTTGCAAAATACATACAGATCTGAATGTTGCAGAACCATAGACTAAACTTCTCTCAAGCAAAACATGATCACTCTTTGGGTGTTAATCACATAGCGATGTGAACTAGATTATTGACTCTAGTAAACCCTTTGGGTATTAGTCACATGAAGATGTGAACTAATAACATAAAGATGTGAACTATTGGTGTGAAATCACATGATGATGTGAAGTAGATTACTGACTCTAGTGCAAGTGGGAGACTAAAGAAAATATGCCCTACAGGCAATAATAAATTTGTAATTTATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAACCTAGTACATGTGTGAATACATAGACAAACAAAGTGTCCCTAGTATGCCTCTACTTGACTAGCTCGTTAATCAAAGATGGTTAAGTTTCCTAGCCATAGACATGTGTTGTCATTTGATGAACGGGATCACAGCATTAGAGAATGATGTGATGGACAAGACCCATCCGTTAGCTTAGCACTATGACCGTTTAGTTTATTTCTATTGCTTTCTTCATGACTTATACATGTTCCTCAGACTATGAGATTATGCAAATTCCGAATACCGTAGGAACACCTTGTGTGCTATCAAACATCACAACGTAAGTGGTGATTATAAAGATGCTCTACAGGTGTCTCCAATGGTGTTTGTTGAGTTGGCATAGATCGAGATTAGGATTTGTCACTCCATTTATTGGAAAGGTATCTCTATGCCCTCTCGGTAATGCACATCACTATGAGCCTTGCAAGCAATGTGACTAATGAGTTAGTCACGGGATGAGGCATTACAGAACGAGTAAAGAGACTTGTCGGTGACGAGATTGAACTAGGTATGATGTTACCGACAATCGAATCTCGGGCAAGTAACATACCGATGATAAAGGGAACAACATATGTTGTTGTGTGGTTTGACCGATAAAGATCTTCGTAGAATATGTAGGAACCAATATGAGCATCTAGGTTCCGCTATTGGTTATTGACCGGAGATGTGTCTCAGTCATGTCTACATAGTTCTTGAACCCGTAGGGTCCGCACGCTTAACATTCGATGACGATATGTATTATGAGTTATGTGATTTGATGCACCGAAGGTTGTTCGGAGTCCTGGATGAGATCATGAACATGACGATGAGATCATATATCGGAAGGCTACATTCGGACACGGGAATGGTTCGGGTTGTTTCGGAGTACCGGGGGTTACCGGAACCCCCCCGGGTAGTTATTGGGCCTCATGGGCCTAATGGTGGAAAAGAGGAGGCAGGCCATGGTGTGGTGTGTGCCCCCCCTATCCCAAACCAAATTGGACTAGGTCTAGGGGGCCGGGGCCCCCTTTTCCTTCCCTTCTTCCTCCCTTCCTTCTTCTCCTACTCCTACTTGTGGCTGGCCCTCCTTTATATACGGGGGAGGGGGCACCCCATGGACACATAAGTTGATCTTTAGCCGTGTGCGGTGCCCCCCTCCACAGTTTTCCACCTCGGTCATATTGTCGTAGTGCTTAGGCAAAGCCCTGCGTCGGTAACTTCATCATCACCGTCAACAAGCCAGGGGTAAGATGTCGG
scaffold8181	Ensembl_Plants	rRNA	109504	109622	.	-	.	ID=gene:ENSRNA049475564	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AGATCCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCTAAAGTTAAGCATGCTTGGGTGAGAGTAGTAATAGGATGGGTGACCTCCTGGGAAATCCTCGTGTTTGGGCGA	scaffold8181	Ensembl_Plants	LTR/Copia	109436	109538	277	+	.	ID=123064	repeat_name=RLC_Angela_3B_086_K02-1	repeat_type=LTRs	sequence=GAAAAGGGGGGCAATCCTACTCCTAGTAGGAGTGGGTTTCCCCCTTTCCTAGTCCCTAGCCCTACTCTCGCCCAAACACGAGGATTTCCCAGGAGGTCACCC
scaffold7710	Ensembl_Plants	rRNA	60386	61645	.	+	.	ID=gene:ENSRNA049475286	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=ATGGCAAAAGTGCAAAAGATAATAGGTTACAGACTTCGTGAAAATAACAAGTCAGGAAGTTAACATCAGGAAGAAATCTTTAGAGCAAGATAACAACATGTTACAGGAACATATCATGGCAAAGCAAGGCATGGCATGAAGCTACTCAAAGCATACAACAAAAGTCCCTTACTGAACATAAGCCAAAAGGGACCATAATTTTACAACTAGCAACGGAATGGACACCAGAGACTGTTGAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGTGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTACCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCACGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGGGTCGGAAGCGGGGCATGTCCCCTCCTTTTGGCTCCAAGGCCCGGTCTTACCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCAATCCTTTAGATCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAACGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGCTGCTTTTTGATCCTTCGATGCCGGCTCTTCCTATCATTGTGAAGTAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGCATGCGACGCCTGCGCC	scaffold7710	Ensembl_Plants	LTR/Gypsy	59709	60583	5885	-	.	ID=378479	repeat_name=trep2261	repeat_type=LTRs	sequence=TTATGGTCCCTTTTGGCTTATGTTCAGTAAGGGACTTTTGTTGTATGCTTTGAGTAGCTTCATGCCATGCCTTGCTTTGCCATGATATGTTCCTGTAACATGTTGTTATCTTGCTCTAAAGATTTCTTCCTGATGTTAACTTCCTGACTTGTTATTTTCACGAAGTCTGTAACCTATTATCTTTTGCACTTTTGCCATGCTTGTTTGAACCTGCTATTGAGTGAATTGGCCGTAGCTCAGTGTTCATATTTTGTCAAGCATCTTGAGTGGATCCCTGCCATGTATTTTGTTGCTATGTTGGAGTGGTGTAGCATGTTGTCCTTGATGCATTTAGATGGTCTCGTGCTGTTAATCGCAGACCGATGCCATATTTGTTTTGCTCGCCATTTCCAAACCGTGCATCCGATTCCGGTGATATTTATATTGATTTCGACTGAAATCAACTCACCTTTCCAGTGGCACTCTTGGTTTTCCAAGTTGAGGCCAGGTTCAATCATTCCTTTCCAAATCATGCATATGCATCACATATCGCATCCCGCATATCATGACCATGTTTGCATCATGTTGTTTGAGCATTGCACGTGGTTGATTGTGTTTCCCTTTGCTTGTTGTTCTTGCTTTGGGTAGAGCCGGGAGACGAGTACGTGATCGAGGAGCCCGTTGAGTACGCTTAGGAGGATCAAGTCAACTCAGAGAACTTTGCAGGCCTGATGACCATACCCTCAAAATCACTTCTATCTTTGCTTGCTAGATGCTCGCTCTTTTGCTATGCCTATGCTACGATACCTACCACTTGCTTATCATGCCTCCCAAATTGCCATGTCAAACCTTTAACCCACCTTGTCCTAGCAAACCGTTGTTTGGCTATGTTACC
scaffold14860	Ensembl_Plants	rRNA	950	1181	.	+	.	ID=gene:ENSRNA049475028	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GTTTCCAGCATCGTTACTTTGAAGAAATTAGAGTGCTCAAAGGAAGCCATCGCTTTGGATACATTAGCATGGGATAACATTATAGGATTTTAGTCTCATTGTGTTGGCCTTCAGGATCTGAGTAATGATTAATAAGGACAGTCGGGGCATTTGTATTTCATAGTCAGAGGTGAAACCCTTGGTGAGGGAATCCTGGATTAGGGGGTATCCGGACAGCCGGACTATATCCTTT	scaffold14860	Ensembl_Plants	LTR	1132	7741	43570	+	.	ID=837948	repeat_name=LTR_AC207908.1_112	repeat_type=LTRs	sequence=GAGGGAATCCTGGATTAGGGGGTATCCGGACAGCCGGACTATATCCTTTGGCCGGACTGTTGGGCTATGAAGATACAAGATTGAAGACTTCGTCCCGTGTCCGGATGGGACTCTCCTTGGCGTGGAAGGCAAGCTTGGCAATATGGACAGTAGATCTCCTTCCTTGTAACCGACTTTGTGTAACCCTAGCCCCCTCCGATGTCTATATAAACCAGAGGGTTTAGTCCGTAGGACCAACAACAATCATACCATAGGCTAGCTTCTAGGGTTTAGCCTCTTCGATCTCGTGGTAGATCAACTCTTGTACTACTCATATCATCAAGAACAAACAAGCAGGACGTAGGGTATTACCTCCATCAAGAGGGCCCGAACCTGGGTAAACATCGTGTCACCCGCCTCCTGTTACCATCCGCCTAGACGCACAGTTCGGGACCCCCTACCCGAGATTCGCCGGTTTTGACACCGACATTGGTGCTTTCATTGAGAGTTCCTCCGTGTCGTCATCGTTAGGCTGGATGGCTCCTTCAATCATCGATAGCGATGCAGTCTGGACTGATACTTCTCTCCTCGGACGGATCTTTGTATCCGGCGGCTCCGCACTGCGGGCCAACTCGCTTGGCCATCTGGGGCAGATTGAGAGTTATGCCCCTGGCCACCAGGTCAGGTTTGGAAGCTTAAACTACACGGTCGACATCCGCGGAGACTTGATCTTCGACGGATTCGAGCCCTTGCCGAGTGCACCGCACGGTCACGATGAGCACGATTTAGCTCTACCATCGGACAGTGTTCAGGAGGCCGCACCGGCAACTGCTCCGACCCTTAATTCGGAGCCAATTGTGCCATCCATGGACGGGTGGATAGACCCCGCCACGGAGGCCGCATTCTCAGCGGTGATCGAGCCGAATATCGACCTTACCCTTCACGGGAGCCGTGACGCCAAACTGTTAGATTCTTCCCCGGCCACGGACTCCGAACCGCCTGCGCCCGTGCCCATCGAATCCAACTGGGCGCCGATCATGGAGTTCACCTCCGTGGATATCCTTCAGCACTCGCCCTTTGGCGACGTACTGAACTCATTAAGGTCTCTCTCCTTGTAAGGAGAGTCCTGGCCGAACTATGGCCGGCCAGATCGGGATGGGGACGACGAAGAAATTCGCCGCCCACCCACCACCCACTTAGTAGCCACTGTCGACGATTTGACCGACATGCTCACCTTCGACTCCGAAGACATGGACGGTATGGAGGACGATGCAGGAGACAAACAGGAGCCACTGCCCATAGGGCACTGGACGCCCACTTCATCATATGATGTATACATGGTGGACACACCCAAAGAAAATGACAATGAGGAACGGAAGGACGCAGCGAAGGATCGTTCCCTCGAGAAGCAGTCAAAACGGCGGCGTAAGCGCCACTCCAAATCCCGCCTCGGCAGAAACAATGATCATATAGACCCAGTGATAGAGTAGGATGAGCCAGCGGACGACAAACACGGCATCGAACCACCGTCCGACCAAGGCAACACGGAGAATCAAACCGAACAACCCGACTCCGTCGAAGATAACAGTCCGGATGACATCACACCAGACAGGCACCCGGAGCAATAGAATACCCATCAAAGGCATGTTGCCACTGCGAGGAGTCTGAAAAAGCAGAAGCAAAGGCTTAGGGCTGCACAAGACACACTCAGAATTAGATGGAGTGAAGTACTCAACACAGTAGCAAAGTACAGCGGTAGTCGCCACACAAAGAGCTACCCGAAGCGAAAGCTGCTACCTAAATTCAATGAGGAGGCCTTAGATCCCCCGCAATCAAAAAACAAAACAGCCACCCGGTCGGATAGACGACCTCATGGCCAACATAGAGCAGCAAACGATGCCACACACAAGCCAGTACGCGATCCACGTGAGGGCTCGCATCAAAAGGACGGCGCAACCAGATCCATCTACGGGCCAAGCAAGCACGCTCCAGCATGCAACGCAACACAACAAAAATCCGAACACCACGGTACACCCAAATACAGGGGTGCCGCACACCCCCTATGTTTCACCGATGAGGTGCTAGACCATGGATTTCCAGAGGGATTCAAACCCGTAAACATAGAGGCGTGCGACGGAACAACAGACCCTAGGGTCTGGATTGAGGACAACATCCTCCATATCCACATGGCTTGAGGAGACGACCTCCATGCCATCAAGTACTTACCCCTCAAGCTCAAAGGGCCAGCTCGGCACTGGCTTAAAAGCCTCCCCGAAAACTCCATTGGAAGCTGGGAAGAGCACGAGGACGCTTTTCGAGCAAATTTTCAAGGGACCTATGTCTGACCACCGGATGTAGACGATTTAAGTCATATAACTCAACAGCACGGAGAGTCAGCCCGAAAGCTTTGGAACAGGTTTCTCACTAAAAAGAACCAAATAGTCGACTGTCCGGACACCGAAGCCTTAGCAGCTTTCAAGCACAGTGTTCGAGACGAATGGCTTGCCAGACATCTCGGCCAAGAAAAGTCGAGAACAATGGCAGCATTAACAAGCCTCATGACCCACTTTTGCGCGGGCGAGGATAGCTGGTTAGCCCGATGTAGCACCAATGACCGAAGTACATCCGAAGTCAGGAACGGAAACGGGAAGCCACGACGTAGTAAAAATAAGCACCGGAATAAAGAAGACAGCCCGAAGAGCACGGCAGTAAACGCTAGATTTAGAAGCTCTCGGCCAGGTCAGCAAAAGCTGCCCTCTAAAGGCAACAGAGACGAACTCTCCAGCCTGAACAAGATTCTGGACAAAATATGTCAGATCCACAGCACCCCCGGTAAACCTGCAAATCATACCCATAGAGAATGTTGGGTCTTCAAGCAGTCCGACAAGCTCAATGCCGAACACAAGGGGTAGGATACACCAAGCGAAGACGAGGATGAGCCTCGCAAGCAAAGCACTGGGGAACAGAAGAAATTCCCACCCGAAGTCAAAACAGTAAACATCTTACACTTGATGAAGGGGAGAAACAAAGCGGCACTCCTAGAGACACATGCCCCAGGGCCTATCATCGCGGAGTTCTGCCATTGGTCGTCCAAACCAATCATCTTTGACCATCAGGATTACCCGGCAAGTATCCGGTATGCAGGATGGGCTGCCTTGGTGTTAGACCCGATAATTGACGGATACCACTTCACACGAGTCCTGATGGATGGTGGCAGTAGTTTAAACCTGATATATCATGACACAGTCCGCAAAATGGGGATAGACCCACCAAAAATCAGCCATAGCAATACTACCTTTAAAGGAGTAACGCCAGGCACATAAGCCCATTGTACGGGCTCCCTGCTACTACAGGTTATATTCGGCTTTCCCGAGAACTTCCGCAGCGAAAAGTTAACCTTCCACATCGCTCTGTTCCAAAGTGGCTATCAAGCACTACTCGGACGCGAAGATTTCACTCGCTTTAACACAATACCGCATTACGCTTCTCTCATGCTTAAGATGCCCGGTCCACGTGGCATCATTAAAGTAAATGGAAATATTGAGCACTCCTTGCGCGCGAAAGACCGGGCGGCTGCCTTCGCAGCCGCACACTAGACGGCCTCACCAACTGAAGCATCTGACATGTCGTTAAGACCACGGACACGGTTAGACGAGTCCGGTGTAACTATATATAATTGATACAAGTTTGATGGCTATACCCCTATAACAATACAAGGGGCTCAACGCGCGTAAACAAGTGACAATTAGGCTCAACTTTACTCATCTTGAATCGTACATGGTTTAACCTACCTTTTGCACGACAACTTTTCAGCTAAGTTCCTCTCTTTCACATATGACCATCATGCTACACCCATCCAGGATACGGCACAACGGAGACACAGGTGCAGACGTGCAGCAGGGACCCGTTCCAAGGATTCTTTTTAGCTTAAGACCCTGCGTAAACCTTTTTTACTGTCTCTTGTTGATACACATCCCCTGGATTCTCAGTACAATTGAGAAGGATGCTGACGTATTGGCATGTGGCCACGTCAGAATATTGCATGTACCTGGACACCAGGGGCTTATTACACAGGGCACTGTTTAGCCTGGTTTACATCATAAAGACTAAATACCTTAGGGAGTGTTTGGCGGCGCGAGTTTGGCCTTATATGCATCAGCTCCGAATCATGTCTTTGGTCAAATGTTGGGTTTGCCCGGCTCCTGTGTTTTGTTGCCTTACGTTCTGCTCTATTGGCTAAGGCGGCACCAGGAGAACTACTGCAATTGTGCCCTGGTTCATCCGGACGAGCACCTGAGTAGAGAAAGCCGAAAACTGAATATCATGATATAGCGTGAGACTGATCAACCACTCGATGACCTAACGGAATCTTCGGGATTCCTCCGCCTTAACGAAGGGCCATTTCCTGGCCAGGCGTGTACGCGCCCCGAATTCGGATGAGCGCGGAGCCACCAGGGGCTATATAGTAGGCCCACTGTCAAACTCCTCTGGCTAAGTGAAAGTGTTAAAGCATTATAGTCCGATTGCCTAGTTCACTGTGCTATCACCTCTTTAATGGACCAAGACATTGGATCAAGCGTGAACATGCGTCTTCTGCGAGCACCCCCGCATTATATGTGTGGGGGCTGAAGCCGACGACTGCCATCTTTCGGGTTATATACATATATACATAAACGGCCGCACGGGAGGCATCATAGTACTTTCGGGCAAAAGTATAAATACAGCCTTGATAAACTCAATAAAACATTGTTTTTACAATGGGAATACATGTCACTCAAACATAATATTCTTCGAGCACTAAGCCTCTATCGAACGAGCGCCTTCAAGAACTTCTTCAAAGTAGTGCTCGGCAGCCACTCGGCCTATGGCCGAACCCTGTGCCGCAACAGTGGGGACATCCATCTCCGCCCAGTATGTTTTGACACGGGCCAGGGCCATCCGCGAGCCTTCTATGCACGCCGACCTCTTTACAGCATCGATGCGTGGCACAACACCAAGGAATTGTTGCACTAAGCTAAAGTATATATTCGGCCTTGGCCCTCTCGGCCACAGATGATCCACAACGGACCTCATGGCATGTCCGGATAATCTATGGAGCTCGGCCCACTCGGCCATTTGCTCATTCAACAACAGCGGATGGGCTGGTGCATGAAACTGTGACCAAAACAGTTTTTCCACTTCGTGATCTTTCCGATCCTTGAAGTACTCGACTGCATCAGCAGCACTTGTAGCCAAATCCACGTAGGCGTCTGCAGAACTCCATAGCCGGTCCAGAGGTGCATACTTTAGATCCCCGAACTTAGTCCGCAACAAGAAGGGCTTCCCAGATACAATATACGCAGCTTGATGCAGCCCCTCCTTCGTCGCTCTAATTTTGGAGCGGGCTTCCTTGGCAGCCACCCGGGCTTTTTCCAGGGCCGTCGCCTTCGCCGCGTTTTCTTCTTCAAGAAGCTGGTAACGGTCAGCAGCATCTTTTAACTCTACAGCCATCTTGGCTATTTTTTCCTTGCTCTCGCAATGCGCGGCCTGTTCGGCCCTTAACTCTTCGTCCGCCATTAAAGCGGCCGCATTGCTGCTCCTTGCTTGCTCCTTGGATCCGGCAAGCTCTGCCCGAAGGGTCTCCACGGTGGCAGCTCCATCTGCAGTCACAACATATTAAAGATACTGGCATGATGCTGCTCTTATTATGTGACAATCACCAGAAAAATCACCTACCTTGTGCCTCGTTAAGCCGTTTGTTAACAAGCACGATGTCGGCATCTGCCGCATCTAGTTGCCGCCTTAGTTCGGCAAACCCATCAGTCCGGCTAGCCATTGGAGCTTCAACCACCTGCACATAAAGGCGGTCTGGTTAGTATCTAGGACTATGATCCTCTGTTTGCCGCCATTTTCGACGGCAACCAAAGTCTCAGGGGCTACTATCTACACAGGGAACATCTAAAAATGTGCGGTACTGTCAACAATGTACATCATTTTGTGTACCTCAAAACCCATCAGTAGACTCATAAAAGCTTCATGCAACCCGCTTTCAGCGGACAAAATCCTTTCAATCACCGTACCCATCAACGTGCGGTGCTCTTCTGAGATAGCCACTTGCCCTAACAGATCCCTCAGTACGTCCGACCGCACACCAGACGGTGCCAGAATCTTTTGATTGCTCTCTTCAAGAGCCGGATACTGAGGACTTCGAGTGGCCATAGGATTACCTTCTGGCCTTGCCGGATCAGGAGAAACCCTCCGCGATGACACCTCGAGGTCGCCCGCCTCGTGAGGCCGTGTGGCAGGGGAGCCGTTTCGCTCTCCATCATCTCTGGAAGAATATCCCTTGAAGACAAGCTCTGCTGAGAAGGGCTAAGATCCGAACTACAAGATAAATGCTTCGATTATTTTCCTCAGAAGTAAAGCGAGATATTTTCATTATTAAGTACCCTTTTACTTACAGCTCGGTGGAGGGCTGATCCCCTTGAGGGCATAGTGCGGCCAGGGTATCCCCCAGGGCAGGACCCTCCGGCGGAGATTTCTTACCCCGTTTGGAGACCATTGGCTTCGGGTCCTCAGAGGCGGTTCTCTTCCTTCCCTGGGGAGAGGAAGTTTCAGTTCCTCCTCCCCGACTAACCTCCTTCGCAGAAG
scaffold74522	Ensembl_Plants	rRNA	5475	5716	.	+	.	ID=gene:ENSRNA049482336	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CACCATGATCTTGCGTGTGCGTAGGAATTTTTTTGAAATTACTGCGTTCCCCTACAACTTTGCCTACAGTTAACCAAAGGGTGAACACACGTGCTACAGTGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGAAATCGCTAGTAATCGCGGATCAGCATGCCACGGTGAATATGTACC	scaffold74522	Ensembl_Plants	LTR	4965	5526	2494	+	.	ID=281720	repeat_name=LTR_AY146588.1_283	repeat_type=LTRs	sequence=TCTTCTCTTTTCCCTTTTCTTCTCTCCTACTCCTACTACATGGAAGGGGGGAATCCTACTCCCGGTGGGAGTAGAACTCCCTAGGGCACGCCATAGTAGAGGGCCGGCCCTCCCCCTCTTCCAATCCTTTATATACGGGGGAGGGGGGCACCCCATGGACACACAAGTTGATCAGTTGATCTTTTAGCCGTGTGCGGTGCCCCCCTCCACCATAACCCACCTCGGTCATATCGTAGCGGTGCTTAGGCGAAGCCCTGCATCGGTAGCATCGTCATCACCGTCATCACGCCGTTGTGCTAACGGAACTTTCCCTCGAAGCTCTGCTGGATCGGAGTTCGTGGGACGTCACCGAGCTGAACGTGTGCTGAACTCGGAGGTGCCATACGTTCGGTACTTGGATCGGTCGGCTCGTGAAGACGTACGACTACATCAACCGCGTTCTCATAACGCTTCCACTTACGGTCTACGAGGGTACGTAGACGATACTCTCCCCTCTCGTTGCTATGCATCACCATGATCTTGCGTGTGCGTAGGAATTTTTTTGAAATTACTGCGTTCCCC
scaffold267612	Ensembl_Plants	rRNA	308	424	.	+	.	ID=gene:ENSRNA049482199	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=TCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAA	scaffold267612	Ensembl_Plants	LTR/Gypsy	280	506	1959	-	.	ID=826994	repeat_name=sabrina_115G1-1	repeat_type=LTRs	sequence=GACCTTTGCATTTTAGATTTGGATCTTTTTCTTATTTCAAAATAGTGAAAAAGTCAAATAAGAGGTGTTAAGCTTTTTATCATTCTGGCATCGAGCTATTTTGCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAGGAAAGGCA
scaffold224674	Ensembl_Plants	rRNA	91	247	.	+	.	ID=gene:ENSRNA049481823	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAACCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTAATCGAGCGCCCTTGCGCTAAAGATGAACGGGGCTAAGCGATCTGCCGCA	scaffold224674	Ensembl_Plants	DNA/Stowaway	17	91	343	+	.	ID=2246131	repeat_name=trep1080	repeat_type=Type II Transposons	sequence=CCCTCCATCCGGAAATAAATGAATGGGTCTAGGCGTATTTTAGTTCTAGATACATCCAGTTCGGATCACCAACT
scaffold115035	Ensembl_Plants	rRNA	1250	1378	.	+	.	ID=gene:ENSRNA049481789	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=GCCACTTAGTGATTTTCTCGAGGAACCGTTGATTCACACAATTGGTCATTGTGCTTGGTTGAAAAGCCAGTGGCGTGAAGCTACCGTGTGCCCGATAATGACTGAACGCCTCTAAGTCAGAATCCAAGC	scaffold115035	Ensembl_Plants	LTR	1	1275	9518	+	.	ID=1156109	repeat_name=LTR_AC200778.1_18	repeat_type=LTRs	sequence=TCATCCACCATCCTCCATCACCAATTTCATGATGCTCACCGCCGTGCGTGAGTAATTCCATTATAGGGCTGGACGGTGATGGGTTGGATCAGATTTATCATGTAATCGAGTTAGTTTTGTTAGGGTTTGATCCCCAGTATCCACTATGTTCTGAGATTGATGTTGCTATGACTTTGCTATGCTTAATGCTTGTCACTAGGGCCCGAGTGCCATGATTTCAGATCTGAGCCTATTATGTTTTCATCAATATATGAGAGTTCTTGATCCTATCTTGCAAGTATATAGTCACCTATTATGTGTTATGATCCGTTAATCCTGAAGTGACAATAATCGGGATACTTACCGGTGATGACCGTAGTTTGAGGAGTTCATGTATTCACTATGTGGTAATGCTTTGTTCCGGTTCTCTATTAAAAGGAGGCCTTAATATCCCTTAGTTTCCATTAGGACCCCGCTGCCACGGGAGGGTAGGACAAAATATGTCATGCAAGTTCTTTTCCATAAGCATGTATGACTATATTTGGAATACATGCCTACATTACATTAATGAATTGGAGCTAGTTCTGTGTCACCCTATGTTATGATTGTTACATGATGAACCACATCCGGCATAATTATCCATCACTGATTCGATGCCTACGAGCTTTCCATATACTGGTTTATGCTTATTTACTTTCCCATTGTTATTGTTACAATCACTACAAAATACCAAAAAGATTACTTTGCTTTCGTTACTCTTTTGTTACCGTTACCATCAATATCATATTACTTTGCTACTAAACACTTTGCTGCAGATACTAAGTTTCCAGGTGTGGTTGAATTGAAAACTCAGCTGCTAATACTTGAGAATATTCTTTGGCTCCCCTTGTGTTGAATCAATAAATTTGGGTTGAATACTCTACCCTCGAAAGTTGTTGCGATCCCCTATACTTGTGGGTTATCAAGACTAATTTCTGGCGCCGTTGCCGGGGAACATAGCTCTATTCTTTGAGTCACTTGGGATTTATATCTGCTGGACACTATGAAGAATTTGAAAGACGCTAAGACAACAATTTATCCCTCAACTATGAGGGGAGGTAAGGAACTGCCATCTAGCTCTGCACTTTATTCACCTTCTGTTATGAGTAAGCTTGCGACACCTAAACCTGCTTCTGATATTCGTTCTGATATGTCGCATGTTATTGATGATGCTACTTCTGGTATACGTGATACTTATGATGAAACTACCTCTATGCCTGATACTACTATGCCACTTAGTGATTTTCTCGAGGAAC
scaffold126243	Ensembl_Plants	rRNA	26070	26231	.	+	.	ID=gene:ENSRNA049481516	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GGTGGTGCATGGTTGTCGTCAGCTCGTGCCCTAAGGTGTTGGGTTAAGTCTCACAATGAGCGCAACCCTCGTGTTTAGTTGCCACTATGAGTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGACGGGGCCAAGTCATCATGCCCC	scaffold126243	Ensembl_Plants	LTR/Copia	26057	26074	311	+	.	ID=2151398	repeat_name=trep4213	repeat_type=LTRs	sequence=ATGTCGGACACAGGTGG
scaffold92546	Ensembl_Plants	rRNA	691	784	.	+	.	ID=gene:ENSRNA049481010	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TCCAGTGCAGTGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGT	scaffold92546	Ensembl_Plants	LTR/Copia	506	704	1410	-	.	ID=729958	repeat_name=LTR_EF081027.1_414	repeat_type=LTRs	sequence=CTCACTGCACTGGAGGGTACGACACCAGCTGCTTCAGAATGGATTATTGATAGTGGGTGTACAAATCACATGACCGGCAAGCAAAGCCTTCTCATGGACTCAACTTTATGTCTATCAGACAAAAGTCACATCACATTTGCTGACACTGGTAAAAGCAAGGTATTGGGTCTAGGTAGAGTGGCAATCTCAAAGGATCAA
scaffold257018	Ensembl_Plants	rRNA	335	1555	.	+	.	ID=gene:ENSRNA049480162	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CACTTAGTGATTTTCTAGAAGAACAAATTGCTAGGGCTAGAGAAAGAGAAATTATTGAATCTGAATACGATGATGATAGTGATGATGAAAATATTCCTGTTATTCCTGAGGGTTATTTATTTTATCAAGATGCTTCTTTAGCTATTTTACCTTGCAGAGATAGATATGAGCTTAAGAGGTTATTAATTAAATGGAACAAAGAATCACTTAGATATAAAATGAAACCCGCAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCCTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCACAACGAGCGCAACCCTCATGTTTAGTTGCCACTATGAGTTTGGAACCCTGAATAGACTGCCGGTGTTAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTGGCCATGTTTGAAGTCATTACCGTTAACCGTAAGGAGGCGGATGCCTAAGGCTATGCTTGCGACTGGAGTGAAGTCGTAACAAGGTAGCCGTACTAGAAGGTGCGGCTGGATCACCT	scaffold257018	Ensembl_Plants	LTR/Gypsy	59	562	3889	+	.	ID=1744061	repeat_name=trep815	repeat_type=LTRs	sequence=TAGCTCTATTCTTTGAGTCACTAGGGATTTATATCTGCTGGACACTATGAAGAATTTGGGAGATCCAAAAACAAAGATCTATCCCTCAACTACGAGGGGAGGTAAGGAACTGCCATCTAGCTCTGCACTTGATTCACCTTCTGTTATGAGTAAGTTTGCGACACCTACACCTGCTTCTGCTATTCGTTCTGATATGTCGCATGTTATTGATGATGCCACTTCTGCTATGCATGATACTTATGATGAAACTGCTTCTATGCCTGCTACTACTGTGCCACTTAGTGATTTTCTAGAAGAACAAATTGCTAGGGCTAGAGAAAGAGAAATTATTGAATCTGAATACGATGATGATAGTGATGATGAAAATATTCCTGTTATTCCTGAGGGTTATTTATTTTATCAAGATGCTTCTTTAGCTATTTTACCTTGCAGAGATAGATATGAGCTTAAGAGGTTATTAATTAAATGGAACAAAGAATCACTTAGATATAAAATGAAACCCG
Scaffold315259	Ensembl_Plants	rRNA	9	127	.	-	.	ID=gene:ENSRNA049479961	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GTCTGCGATCACACTCACACTAGTGCACCAGATCCCACGAGAACTCCGCACTTAGGCGTGCTTGGGCGAGGGTAGTACTAGGATGGGTGACCTCCTCGGAAGTCCACGCGTTGCACGCA	Scaffold315259	Ensembl_Plants	nonLTR	1	124	781	-	.	ID=2249130	repeat_name=RXX_Gk_DX402720.1_7357	repeat_type=Unknown	sequence=TGCGATCACACTCACACTAGTGCACCAGATCCCACGAGAACTCCGCACTTAGGCGTGCTTGGGCGAGGGTAGTACTAGGATGGGTGACCTCCTCGGAAGTCCACGCGTTGCACGCACCCCTCT
scaffold2783	Ensembl_Plants	rRNA	13791	13930	.	-	.	ID=gene:ENSRNA049472837	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAGGGTTTCATATCTACGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATAGGTGACCTCCCGGGAAGTCCTCGTGAAAGGGTTTC	scaffold2783	Ensembl_Plants	LTR/Copia	13732	13949	1868	-	.	ID=1742937	repeat_name=trep3125	repeat_type=LTRs	sequence=CTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTACGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATAGGTGACCTCCCGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGATAAAAAGCTTCATAAGTAAGTAAGTAAAC
scaffold3044	Ensembl_Plants	rRNA	47087	48100	.	+	.	ID=gene:ENSRNA049471520	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GAGGGAGCAGCATTAACATCCTATAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAACAGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCCTAAGGAGAAATTGCCACCGAGTGACGTGCCAGCGCTACTACTTGATTGAGTGCCAGCACGTAGCTGTGCTTTCAGCAAGAATTTCACCATTGGGAGCCGGTGCCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCCAAGACCCACGGAGACCTACCTATAGTGACGTCAAAGTACCAGTGAGCATGGAGGTTTGGTTGAAATTGGTTACGACGACGTCGAGTTGGCGGCGGAGGAAGACTCGGCATGAAGGCCAGAAAATGGTGTGGAACGTAGTGGTAATAGTACGCGCCCCGCTCCGAAACAAAGAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCACAAAGGCCTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCTG	scaffold3044	Ensembl_Plants	LTR/Gypsy	46044	47111	7791	+	.	ID=198500	repeat_name=LTR_AC216564.1_197	repeat_type=LTRs	sequence=ATTACGAGCCCGGTTTATCAACAATTTCAAGGATACCTGTAAACAGCCTATGTCGATAGTAGACTTAGCGGCATGCGTCTAGGAGGAAGGAGAATCAACGACTCATTGGTGCGCCAGGTTTCACAAGTGTTGCACTCCTCAGACCGCATCAACGCTGACACCGCAGTATTAACCCTAGAAGGCAACTGCCGGTTTGGGCCCCTGAAGTTGAAATTGGGACGGATGAAGCGTCATTGCACCGACATGGGAACCCTCATGGCCGCTTTGGTAAAATATGCTGATTCTGATAGTACCAAGGATCCCGAGTCTGATGATGACAAGACACGAAAGGGGAAGAAGAACAACAGCTCCAAAGGTCAGCAACATCACTGGGTAGGCAATGGCGGAGGAGGCAAGCGTAAAGCGGATGGCAACATGGATTTTGTGGCTAATACCAACGTACAGGACAATGGCCAGCGGCACAAGGGCAGGTCGAAAAATCATAGTGGAGCGCCCAACCCCAACCCAAACCGCCTGAACTATTTGCTAAACCAGCCCTGTCCAAAACATGGGATGAAGGAGGAGCCAGCAAACCACCTTTGGAAGGATTGTTTTATTATGCAGGAGTTCAAGAATTCTAATAATTTCTGGTATGATCACGTATCTGGCGGCGGCTCAGGATCCGGGCCGGGTTATGGTGGAGGAAGTTCTGGTTCAGGATTTAATGGTAATCCGGGCGGGCATAATGGTTAAAATAGTCAGAACAACCAGGGTGGTCACAACCAACAGCAGCAACAGTCAGGTTACCAAAGCAACCCAAAGCAGTTGAGTAGTGGGCAGTACCATGTCTTTACCACTAGCTTGGACAAGCGAGACCGGAAGGTTCAGAGGCGGGCAGTCAAGTCTGTTGAACCGGCCACACCCCGTTATCTACGTTGGTCTGAACAGCCAATCATATGGAGCAGGGAGGATCACCCACTCCAGGTCGATAATCCGGGTCAGTTGGCTCTGGTGGTGGCGCCTCAGGTGGGAGGTTATAAGTTCACCAAAGTGCTCATGGATGGAGGGAGCAGCATTAACATCCTATA
scaffold266274	Ensembl_Plants	rRNA	547	638	.	-	.	ID=gene:ENSRNA049470086	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAGCGAGAGTAGTACTAGGTTGGGTGACCTCCTAGGAAGTCCTCATGAAAGGGTTTC	scaffold266274	Ensembl_Plants	LTR/Copia	365	725	2835	-	.	ID=1742951	repeat_name=trep3125	repeat_type=LTRs	sequence=GGGAACTCTGCATATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGGTGAAGAAGGAGGGTTGTGATAGAGTTGGCGAGCCAACGTAAAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAGCGAGAGTAGTACTAGGTTGGGTGACCTCCTAGGAAGTCCTCATGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCTTTAGATATGAAACTCATTTGGGTGAGAGTAGTAATAGGATGGGTGACCTCCTGGGAATTCCTCATGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGACAAAGGCTTACTATGTAAGTAA
scaffold266274	Ensembl_Plants	rRNA	418	498	.	-	.	ID=gene:ENSRNA049470081	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AGTCCTTTAGATATGAAACTCATTTGGGTGAGAGTAGTAATAGGATGGGTGACCTCCTGGGAATTCCTCATGAAAGGGTTT	scaffold266274	Ensembl_Plants	LTR/Copia	365	725	2835	-	.	ID=1742951	repeat_name=trep3125	repeat_type=LTRs	sequence=GGGAACTCTGCATATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGGTGAAGAAGGAGGGTTGTGATAGAGTTGGCGAGCCAACGTAAAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAGCGAGAGTAGTACTAGGTTGGGTGACCTCCTAGGAAGTCCTCATGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCTTTAGATATGAAACTCATTTGGGTGAGAGTAGTAATAGGATGGGTGACCTCCTGGGAATTCCTCATGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGACAAAGGCTTACTATGTAAGTAA
scaffold56160	Ensembl_Plants	rRNA	14911	15462	.	-	.	ID=gene:ENSRNA049469632	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=ACACGGATGTGATGCCTATGTTCATGATAATGCCTAGATATCATCATAACTATGCACTTTTCTATCAATTGCTCGGCAGTAATTTGTTCACCCACCGTAATATATGCTATCTTGAGAGAAGCCACTAGTGGGCAATGCCGCTTGTAAAGCTCTTTCTTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGTAGCAGCCGCAGTGTTCTTAGAAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCAGAAGGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCATGTGTAGGTGTGAAATCCATAGATCTATGAAGGAACGCCAAAAGCGAAGGCAACTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAAGATTAGATACCCTGGTAGTGCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCTAACGCATGAAACACTC	scaffold56160	Ensembl_Plants	LTR/Gypsy	15333	18007	20109	-	.	ID=276881	repeat_name=trep2218	repeat_type=LTRs	sequence=GTCTTTTCCTACCAATCTATCCCCCTAGGAGCATGCGCGTAGTGCTTGGTTTTTGATTACTTGTAGATTTTTGCAATAAGTATATGAGTTCTTTATGACTAATGTTGAGTCCATGGATTATACGCACTCTCACCCTTCCATCATTGCTAGCCTCTTCGGTACCGTGCATTGCCCTTTCTCACCTCGAGAGTTGGTGCAAACTTTGCCGGTGCATCCAAACCCCGTGATATGATACGCTCTATCACACATAAACCTCCTTATAACTTCCTCAAAACAGCCACCATACCTACCTATTATGGCATTTCCATAGCCATTCCGAGATATATTGCCATGCAACTTTCCACTGTTCCGCTTATTATGACACGCTCCATCATTGTCATATTGCCTTGCATGATCATGTAGATGACATCGTATTTGTGGTAAAGCCACCTTCATAATTCTTTCATACATGTCACTCTTGATTCATTGCACATCCCGGTACACCGCCGGAGGCATTCACATAGAGTCATATTTTGTTCTAAGTATCTAGTTGTAATTCTTGAGTTGTAAAGTAAATAGAAGTGTGATGATTTTCATTTTTAGAGCATTGTCCCATGTGAGGAAAGTTTTTCGAAAAAAAAGAGAAAGACCATAAAAAGGAGAGGCCCCAAAAAATGAGAGAAAAAGAGAGACGGGGCAATGTTACTATCCTTTTTCCACACATGTACTTCAAAGTAGCACCATGATCTTCATGATAGAGAGTCTCTTATGTTGTCATATACTAGTGGGAATTTTTCATTATAGAACTTGGTTTGTATATTCCAACAATGGGCTTCCTCAAATGCCCTAGGTCTTCGTGAGCAAGCAAGTTGGATGCACACCCACTTAGTTACTTTTGTTGAGCTTTCATTTATTCATAGCTCTAGTGCATCTGTTGCATGGCAATCCCTACTCCTTGCATTGACATCAATTGATGGGCATCTCCATAGCCCGTTGATTAGCCACGTCAATGTGAGACTTTCTCCCTTTTTGTCTTCTCACACAACCTCCATCATCATATTCTATTCCACCCATAGTGCTATATCCATGGCTCGCGCTCATATATTGCATGAAAGTTGAAAAGGTTTGAAAAGACTAAAGTATGAAACAATTGTTTGGCTTGTCATCGGGGTTGTGCATGATGGGAGCATTTTGTGTGACGGAAATGAATCATGGCCAAAATATATGATTTTGTAGGGATAAGCTTTCTTTGGCTATGTTATTTTGATAGGACATGATTGCTTGGTTAGCATTGCTTGAAGTATTATTATTTTTATGTCAATATTAAACTTTTGTCTAGACTCTTTCGGATGTAAACATTCATGTCGCAATAAAGAGAAATACATTGAAAATTATGTTAGGTAGCATTCCACATCAAAAATTCTGTTTTTATCATTTACCTACTCGAGGACGAGCAGGAATTAAGCTTGGGGATGCTTGATACGTCTCCAACGTATCTATAATTTTTTATTGTTCCATGCTATTATATTATCTATTTTGGATGTTTATGGGCTTTATTATACACTTCTATATTATTTTTGGGACTAACCTATTAACCGCAATCCAGTGCAAATTGTTTTTTTTGCCTATTTCAGTGTTTCACAGAAAAGGAATATCAAACGGAATCCAAACGGAATGAAACCTTCGCGATGATCTTTTTTGGAACAAACGCAATCCATGAGACTTGGAGTGGACGTCAAGGAAGCAGCGAGGCGGCCACGAGGTAGGGCGTCGTGCCCAGGGGGGCCAGGCGCGCCCCCACCCTCATGGGCCCCTCGCAGCTCCACCGACCTACTTATTTCGCCTATATATACTCTTATACCCTGAAAACATCCAGGGGAGCCACGGAACCACTTTTCCACCGCCGCAACCTTCTGTACCCGTGAGATCCCATCTGGGGACCTTTTCCGGCGATCTGCCGGAGGGGGATTCGATCACGGAGGGCTTCTACATCAACACCATAGCCTCTTCGATGATGTGTGAGTAGTTTACCATAGACCTTCGGGTCCATAGTTATTAGCTAGATGGCTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCCCCTTGATGTTCTTGGAGATCTATTTGATGTAATTCTTTTTGCGGTGTGTTTGCCGAGATCAGATGAATTGTGGGTTTATGATTAAGATTATCTATGAACAATACTTGATTCTTCTCTGAATTCGTATATGCATGATTTGATATCTTTGCAATTCTCTTCGAATTATCAATTTGGTTTGGCCTACTAGATTGATCTTTCTTGCAATGGGAGAAGTGCTTAGCTTTGGGNNNNNNNNNNNNCTTTCCCAGTGACAGTAGGGGCAACAAGGCACGTATTGTATTGTTGCCATCGAGGATAAAAAGATGGGGTTTATATCATATTGCTTGAGTTTATCCCTCTACATCATGTCATCTTGCCTAATGCGTTACTTTGTTCATATGAACTTAATACTCTAGATGCATGCTGGATTGCAGTCGATGTGTGGAGTAATAGTAGTAGATGCAGAATCGTTTCGGTCTACTTGACACGGATGTGATGCCTATGTTCATGATAATGCCTAGATATCATCATAACTATGCACTTTTCTATCAATTGCTCGGCAGTAATTTGTTCACCCACCGTAATATATGCTATCTTGAGAGAAGCCACTAGT
scaffold230516	Ensembl_Plants	rRNA	2426	2664	.	+	.	ID=gene:ENSRNA049469159	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TAAATTATTTCAGCATTAAGGTATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATAAGTTTTCAAGTTTTGGGTAAAGATTCGATGGACTATGGAATAAGGAGTGGCAAGAGCCTAATCTTGGGGATGCCCAAGGCACCCCAAGGTAATATTCAAGGATAACCAAGAGCCTAAGCTTGGGGATGCCCCGGAAGGCA	scaffold230516	Ensembl_Plants	LTR/Gypsy	2515	3220	5428	+	.	ID=1268323	repeat_name=trep4000	repeat_type=LTRs	sequence=TGTTGGATAAGTTTTCAAGTTTTGGGTAAAGATTCGATGGACTATGGAATAAGGAGTGGCAAGAGCCTAATCTTGGGGATGCCCAAGGCACCCCAAGGTAATATTCAAGGATAACCAAGAGCCTAAGCTTGGGGATGCCCCGGAAGGCATCCCCTCTTTCGTCTTCGTTCATCGGTAACTTTACTTGGAGCTATATTTTTATTCACCCCATGATATGTGTTTTGCTTGGAGCGTCGTTTTATTTTCTTTTGTTTTGCTTGCTGTTTGAATAAAATACCAAGATCTGAAATTCTTAAATGAGAGAGAGTCTTCACATAATTGCATAATTATTCAACTACTCATTCATCTTCACTTATATCTTTTTGGGGTAGTTTGTCATTTGCTCTAGTGCTTTACTTATATCCTTTTAGAGCACGACGGTGGTTTTATTTTGAAGAAATATATAAACTCTCATGCTTCACTTATATTATTTTGAGAGTCTTTAGAACAGCATGGTAGTTTGCTTTGGCTATGAAACTGGTCCTAATATGATGGGCATCCAAGATGGGTATAATAAAAACTTTCATATAAGTGCATTGAATACTAAGAGAAGTTTGATACTAGATGATTGTTTTGAGATATGGAGATAGTGATATTAAAGTTGTGCTAGTTGAGTAGTTGTGAAACTGAGAAATGCTTGTGTTGAAGTTTGCAAGTCCCGTAGCA
scaffold19763	Ensembl_Plants	rRNA	18915	19070	.	+	.	ID=gene:ENSRNA049469082	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TCACATAATTCTTTTTGATGAAGCAGTGAAGTGTACGGATCGCGACGACGGGGGCGGTTCGCCCCCCTCCCCCGACGTCGCGAGAAGTCCATTGAACATTATCATTTAGAGGAAGGATAAGTCATCACAAGGTTTTCGTAGGTGAACCTGCGGAAG	scaffold19763	Ensembl_Plants	LTR/Gypsy	13131	18939	38467	-	.	ID=949752	repeat_name=trep3264	repeat_type=LTRs	sequence=TGCTTCATCAAAAAGAATTATGTGAAAACTGCTTTATGTGATTTAGGAGCTGGTGTTAGTATTATGTCTTTCTCTTTATATAAAAGACTTGACTTGAATAAACTCACACCTACTGAAATATCTTTGCAAATGGCTGACAAATCAACTGCCATACTTATCGGTATTTGTGAGTATGTGCCCGTTGTTGTTGCCAATGTTACTATTTTATCTGTCTTTCTTATACTTGAGATGCCCGAGGATGACAACATGTCGATTATCCTTGGTAGACCCTTCTTGAATACTGCAGGGGCTGTTATTGATTGTAATAAAAGCAAGGTCACTTTTCATATTAATGATAATGAGCATAGGGTACACTTTCCGAAGAAACAATTCCAAGTGAATGGTATTAATGTTATTGAAAAATCTCCGACAATCACTATTGAAAATTTTCAAATACCTCTACCTACTGTCAAAAAGAAATATGAAATGCTTATTGTTGGGGACATTCATATCCCCATTGAGGTAACTTAGTGATTTACAAAAGTTCTTTGGTTTCATGCTAATCGAAAGTAGTTGTTAATAAGACTTGATCAACCTTATTAATGAATCATTTTTGAGAGGTATGAAGTTGATGAATTTAGTCAGCACTACTTCTGTCCTTACTTTTTGTTTTCTGTTTTTACTAGTTAAATAAAATAAAATGCCATGTTTTGTCTAGTTTTTGAATTTCCCGTGTAATAAAAAAATGACCCAAAAATAAAAGTTCTCAGAATACTCTGAAAATTTAATACGATTTTTTTATGAATATTTATGATTTTCTGGTGCAAATAATATCAGAGGGAGGTGCACCAGGTGGGCACAACCCACCTGGGCGCGCCCTGGTGGGTTGTGGTCCCCACGTGGCCCCCTCACTGATCTCTTCATCCCACATCATCACTCACCTCTAGAAAAAATCTCGATTGCTCTCTCTCCCATGTTTTTTCTCTCAAACCCGCGGATTTTGATCTCTTTGCTCGAAGCTCCGTTTCCGAAACTGTTTTTGGGGATTGTTGCTTGGTATGTGAATCCACCATTTGTCCAATTAGTTTTTGTTTTGGTGGTTTATATTTTGAATAATTAGCTACTCCTGGTGCTGCTGTACATGAGCTTGCATGTTAAATTCAGTTCTAAGTAGTTTGAATGCTTGTTATGGCCTCTATGTATCCCTATGAGTAGTTGCTATCAATTTTGTAAAGTTTTGTTGAGAAAATTTGTGGACTAAAAATTTCAGAATTTTGTTCATAGAAAAAAGATGAATATCTTTAGGAAGTTTGCTTCTAAGAAGAATTTCAAGGGTGTTATTGGGGAGTCTTCTGACAGTGATCTCCATCCTCGGAGGTTGGAAGAGGTGCGGCCATGCGAATGGCCGCACAACCAGTTCATGGAAGAAGCTGGAATTCTTCTGGAGTTCACACAATATGCTGCTAATGCCGGCCTCACAGACTTCATCGCAGATGAGTGTGAATAGTATCAAATCCTCACAGACATCTTTGTTCAAAGTTTTACTTTCTTTTCTAGGAATAATCCTCCTGAAGTGCAGTTTCATTTATATGCTGAAAACCATCAGATACCACTTACTGAATTTTGTAATATGCATGACCCCTTCTGGCGGGAGCTTAGCTGAGCCTAGGCCAGCTGAGTTTGAGGCCTTCTATCGCACCTTAACAGTGGGAGATGAGAGAGGGGTGTCGGCCGTCACTGCCACTGGCATACACTTTCCTGCCGTACATTATTTTGCTTTATTTGTTGCTAAGTGTTTGCTTGCTAGAGAGAAAGTAGGTGCGCTCAGCGCACCAGACTTTGCTGTTTTACGTCGAGCACTAGAGGGCGACAACACTTATAGCTTGGGAGCTGTTGTAGAACGTTGCCTCCACGTTAATAAGTCCAAAGGTAAAATACATGGAGGGATTTTTGCTACTCATTTGGCGGCTCACTTCAATATTGAGATATGCCCTCATCATCACCCTCTTACCAAGGTTTACCTAGACCGCACAGGCATGGATCACCACCATTCTACTGATATCGAATCTACTAACATTCATATTCCATATAACCTGGTTTTCAGTGCGAGGACTCGTGATATTATTCCATTACCTGCTCCTGCTTTGTTTGATTCTATTGTCAGGGGTGGATATAGGATTATACTTGCGGACATCATCGTCTACCGGAACGCTCAGCCTGCTGCAGAGGCAGAGGAGGAGCCTCAGCAGTGGGATGAGTGGATGCCCGCTCCTCAGTACCCCAACTACTATCCAGGCTATTGATCTATTACCAAATTAGGCCAAAAGCCTAATCTTGAGGGAGTACGTGTTTCACTCCGACATTACATTCATGATCAGACATATCATCCCATCCGTCGGTGTTCACACTTTTTCATTGTATCATCCATGCTTAGATTTATTTCCTTGCTTTCTTCTTATGTGTTTGAAAAACTTTCAAAAAACCAAAAAATTTAGTTGTAGTAGTTTACTTTCTATGCATGCTTAGTAGTAATATTAAGAAGAAAACCCCAAAAGAATTCCTTGTTCTTCCTTTGCTTATTGGGAGCTTTCCCGTGTAAATAGTTTTCTCATTTTTTCTTTCCCCTTCTATTTGCTTGTTCAAGAAAATCAAAAACTCCACAAATATTCTAGTGTGTTCTTTGAATTTTTTTCTTTGTATTCGAGTCGTACCGAGGAGAAGACCACGCTAAAAATGTTTGTGGCTCTCATATGAATAAATATTAGTGTAATAAAGAGCCCATTTTATCTTTTCTTCTCCTGTTGAATAAAATGTTTGCAGACTCCAGCTTAGTTCACATCACTCTTGCACTACTATTATTTTCACGTCGTTTGTTTGTGCAAGTGAAAGGCAATAATAACGACATTCGATGAACTGGCCGTAGTAGAGGGAAACGGGTATGAACTCAACTTGTTCTATTTTTGTAAATATGTTTAACCTAGTATCCATGACTCAGCCCGTTATTATTAAGCATGTTTGCAATCACAATTAGAGATTATAGTTTCTCATTCCATGCATAAGTAGCTGGGAGTGGAAAATGATTTATCTTGGATATCAACATAGCGCTAAAATGATTGTGATGTAGTATGATGATATGGTATCCTCCTCTGAATGTTTGAATGGCTTGACTTGGCACATGTTCATGCATGTAGTTGAATCAAAACCAGCATAGCCTCCATGATATTTATGTTCATGGTGTTCATATCCTACTCATGCTAGTATCCAATGTTACTTATGCATAATGCATGTTTATGACCGTTGTTGCTCTCTATCTGGCCGCTTCTCAATCTAATTGCTAGCCTTCGCCTGTACTAAGTGGGGATTCTGCTTGTACATCAAAAATCTTGAACCCAAAGTTATTTCAGATGAGTCCATCATACCTACCTATATTCGGTATTACCCTGTCGTCCTAAGTAAATTTGCATGTGCCACCTCTAAAAACTTCAAATAAATATCCTTTTCTGTGTGCCTGGATCGTTCATGGAATAATAGGAGGTGGTCGGTATCTTCCATGCTAAGCAGATTATTCTCAGGTCGAGTGTTTATTCACTCGCCATTGCACGAGAAAAGGACGATAATAGGGATTACCAGTTTTGAACTCAAAAAATGCAAATAATTAAACAAAACTCCCCCAGGACTGTTGTTGGTTTGGACGGCACCCATTGTTTCGGACAAGCCGTGAAATGTGATTGTTGGTGGAGGGGGAGTAAACCTTTACTTTTATCGCTTGAGAACTGCCACTAGCGTGCTTAGCATGGAAGATGTTGATAACTGATGGTCGTGAAGTAAATGAGAAGGGTGCATGTCTCAAGATATCATTTACCTCTGTTTTAAAACTTGAGCTCTGGCACCTCTGCAAATCACTACTTCCCTCTATGAAGGGACTATCTATTTACTTTTATGTTGTGTCATCACCTTCTAAAATAAGCGCCAGGACCTAAGAGCACAGCCGTCATGACTTATGCATTGTGTGTAGCTAATGTTGGGTGCATCATGACTGGATATTTTCTACCATGAATTACAATGTTTAGTCGCTGCTTGAACTTTGAAGGTGCTCTGCATTTATGTTTTGCGGTCTCAGAAAGGGCTAGCGAGATACCGCGATTGTCATATTATATCATGGTTGTTTTGACAACGTGTTGCTGTTTGAGATATCTTATTATTCCTCGCTAGCTGATTATGTTATTGATATGAGTTAATATAATCTTTAAAAGTTATTGTCGACATGGTTAGTTATAATGTTGGCTGAAAACCTAGATGTTATTTAAGCTTATTTATGCAAACAAGAGCAAAAGAGTTCGTAAAAAATTTTCTTTTTCACTTTCAGTTTATCAACTAAATACCTTGAGGACAAGCAAATGTTTAAGCTTGAGGGAGTTGATACGTCTCCAACGTATCTACTTTTCCTAATGCTTTTCATCTTGTTTTGGACTCTAATTTGCATGATTTGAATGAAACTAATCACGGACTGACGCTGTTTTCAGCAGAACTACTATGGTGTTGTTTTTGTGCAGAAATAAAAGTTCTCGCAATGGAACGAGACTTTGCGAGCAATTTTTATATAATAAATAATAATTTCTGAATCCAAGACCTACCGGAGAGGGGCCCCTAGGTGCGCACAACCCACCAGAGTACACCCCTCTCTCCCGGCGCGCCCAGGCGGGTTGTCCTCACCTGGTGGCCCCGCAGACCCTAAAACCGACGCTATAAAATCCTATCTTTCCAGAAAAAACCAGGGAGAAAGAACTATAGCGATCCACGAGACAGAGCCGCCGTTACCTCCTGTTCTTCATCGGGAGGCCAGATCTGGAATCCGTTTGGGGCTCTGAAGAGGGGAGTCTTCGTTCTTCATCATCACCAATCCTTCTCCATCGCCAATTCCTTGATGCTCCCCACCGAAAGTGAATAATTCCTTTGTAGGCTCGCTGGTCGTTGAGGAGTTGGATGAGATTCATCATGTAATCGAGTTAGTTTTGTTAGGGCTTGATCCTTAGTATCCACTATGTTCTAAGATTGATGTTGCTATAACTTTGCTATGCTTAATGCTTGTCACTTTGGGCCCAGGTGCCATGAACTCAGATATGAACCGTTTATGTTATCACAATTATATCCATGTTTTAGATCCGATCTTGCAAGTTATAGTCACCTACTACGTGTTATGATCCGGCAACCCCGGAGTGACAATAGTTGGGACCACTCCCGGTGATGACCATAGTTTGAGGAGTTCATGTATTCACTATGTGTTAATGCTTTGTTTAGGTTCTCTATTAAAAGGAAGCCTTAATATCCCTTAGTTTCCAATATGGACCCCGCTGCCACAGGAGGGTAGGACAAAAGATGTCATGCAAGTTCTTTCCATAAGCACGTATGACTATTTTTGGAATACATGCCAACATTATATTGATGAACTGGAGCTAGTGCCCTATCACCCTAGGTTATAACTGTATCATGATGCATATCATCCAACAAGTCACTGATCCAATGCCTACAAATTTATCATATATTGGTCTTACTAAGTTACTATTGCTATTATCACTATTACACTTGCTACAAAATTACTGCTATCACTGTTACCATTACCATTGCTGCTGTCACTACTATCAAAACTATCATATTACTTTGCCCCAGATTGCTTGCTGCAGATAATTAATCTCCATATGTGGTTGAATTGACAACTCAGTTGCTAATACCTTCAAATATTCTTTGGCTCCCCTTGTGTCGAATCTATAAATTTGGGTTGAATACTCTACCCTCGAAAACTGTTGCGATCCCCTATACATGTGGGTTATC
scaffold19763	Ensembl_Plants	rRNA	20579	20738	.	+	.	ID=gene:ENSRNA049469096	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATAAGGTAAAGCCAATGATTAGAGGCATTGGGGGCGCAACGTCCTCGACCTATTCTCAAACTTTAAATAGGTAGGATGGCGTGGCTTCTTCGGTGAGCAGGTATAGTTGGTATTCCCGGTTCTC	scaffold19763	Ensembl_Plants	LTR/Gypsy	20709	24420	25579	-	.	ID=970571	repeat_name=RLG_WHAM_3B_034_D19-1	repeat_type=LTRs	sequence=ATACATCTCCAACGTATCTATTTTTCCTAACGCTTTTCCTCTTATTTTGGACTCTAATTTGCATGATTTGAATGAAACTAACCCCAGACTGACGCTGTTTTGAGCAGAACTACCATGGTGTTGTTTTTGTGCAGAAATATAAGTTCTCGGAATGAAACAAAACTTTGTGAGGTATTTTTATATAATAAATAAGAATTTCCGGAGCCAAGACCTACCGGAGAGGGGCCCCTTGGTGGGCACAACCCACCAGGGCACGCCCCTCTCTCCTGGCGCGCCCAGGTGGGTTGTCCCCACCTGGTGGCCCTGCCGACCCTGAAACCGACGCTATAAAATCCTATTTTTCCAGAAAAAAACAGGGAAAAAGAATTATCGCGATCCACGAGATGAAGCCGCCGTCACCTCCTGTTCTTCATCAGGAGGCCAGATCTTAGTTCTTCGTCATAACCAATCCTTCTACATCGCCAATTCCATGATGCTCCCCACCGGGAGTGAGTAATTCCTTCTTAGGCTCGCTGGTCGGTGAGGCGTTGGATGAGATTCATCATGTAATCGAGTTAGTTTTGTTAGGGCTTGATCCCTAGTATCTACTATGTTCTAAGATTGATGTTGCTATGACTTTGCTATGCTTAATGCTTGTCACTTTGGCCCCGGGTGCCATGAACTAAGATATGAACCGTTTATGTTATCACAATTATATCCATGTTTTAGATTCGATCTTGCAAGTTATAGTCACCTACTATGTATTATGATCCGGCAACCCCGGAGTGACAATAGTCGGGACCACTCCCGATGATGACCGTACTTTGAGGAGTTCATGTATTCACTATGTGTTAATGCTTTGTTCCAGTTCTCTATTAAAAGAAGGCCTTAATATCCCTTAGTTTCCAATATGGACCCCGCTGCCGCGGGAGGGTACGACAGAAGAAGTCATGCAAGTTTTTTCTATAAGCACGTATGACTATTTACGGAATACATGCTTACATTATATTGATGAACTGGAGCTAGTGCCCTATCGCCCTAGGTTATAACTGTCTCATGATGAATATCATCCAACAAGTCACCGATCCAATGCCTACGAATTTATCATATATTGATCTTGCTAAGTTGCTATTGCTATTATCACTGTTACACTTGCTACAAAATTATTGCTATCATTGTTACTGTTATCATTGCTGCTGTCACTACTACTCAAAACTATCATATTACTTTGCCATTGATTGCTTGCTGCAGATAATTAATCTCCAGGTGTGGTTGAATTGACAACTCAGCTACTAATACCTTCAAATATTCTTTGGCTCCCCTTGTGTCGAGTCTATAAATTTGGGTTGAATACTCTACCCTCGAAAACTATTGCGATCCCCTATCCTTGTGGGTTATCAAGACCTTTTTCTGACGCCGTTGCCGGGGAGTATAGAAATATTTGTTAAGTCACTTGGGATTATTATCATATTATCACTATGAAGAATGTGAAGGATCCTAAGACTAAATTTTATCCCTCAAAGACGGGGGGAGGTAAGGAACTGCCGTCCAGTTCTACTTTAGATTCACCTTCTGTTATGAGTAAACTTGCAACATCACCACATGATATCAATTCTAATATGTCACAAGTTATTGATGATGCTACTTCTACTATGTATAATGCTTATGATGATTCTAGTACCTTGCTTGATGATAATTATATGGCACTTGGTGAATTTCTTGATGAACAAATTGCTAGAGTAATACAACATGATGTTGTTGAATCTGATGATGACCTTGAAATTGAAACTCCTGAAACACCTGCTAGAACTAGCCTTCCTAGATATGAATTGCCTAATGAGGAGACAACTAGAGATATTCTTGCTTGTAAGGATAGAGATGATCTAGATAAATTACTATGCAAGTATAAAGAAAAATCTCTGAATGCCAGAATGAAATATGATCCTAAGTTTGCTACTTCACCTATTTTTATTGATGATAAGGATTATGAATTCTCTGTCAACTCAGAGTTAATTACTTTGGTTGAATCTGATCCTTTCCATGGTTATGAAACTGAAACTGTTGTGGCACATCTTACTAAGTTGAATGACATAGCCACCCTTTTTACTCATGATGAGAAAACTCGCTACTACTTTATTTTTAAATTATTTCCTTTCTCATTAAAGGGTGATGCTAAAGCTTGGTACAATACTCTTACTTCTGGTTGTGTGCGTAGTCCCCAGGATATGATTTATTACTTCTCTGAAGAATATTTTCCTGCTCATAAAAAACAAGTTGCCTTACATGAAATATTTAACTTTGTGCAAACTAAAGAACACCAATTACTTAATTTTTTGCCTGATCATCCTCTTAAGAAAAAAGAAATACTTGATATCTTCTATAATAGACTAGCTTCTAGGGACTTCCTAGAGAGTTGTGCTGGTTGTGTTTTCAGCAAACGAACTATTGGGCAAGCTGAAGAATTATTGGATAATATATTGAAAATTATGATGATTGGACTCTTCCTGAACCACCGGCTAAACCCACTCCAAAGAAGAGGGGTATATTATATCTCAGTCCTGAAGATATGCAAGAGGCAAAGAAATCTATGAAGGAAAAAGGTATTAAAGCTGAGGATATTAAAATTTTACCTCCTATTGAAGAAATACATGGGCTTAATACACCACCACCACCTAAGATGATAGAGGTAAATTCTCTAATGAAATTCAATGATAATGACAATCCTCACAATATGCATCCTAGTCAATGCCTTTATGAGTTTGAAAACTACATTAGAAAACAAGATCACTTCAATGCAAATGTTATGAAACAATTGAAATACAATTCTGATATGATGGCCCGCTTGAGTGACTTATTACTTAGAATCTCAAATGATGTTAGAGGTGTTGGAAAACATGCTTCTAGGGTTCAAACCCAGTTAGAACAAGTTGCTAAATCTCAAAGAGAATTGCTTGATGAAATGAATAATAATATACATGACTTTGTTGTTAGAGTTGCAACTAGAGAAGGTAAAATGACTCAGGAACCACTTTATCCTGAGGGACACCCAAAAAGAATTGAACAAGAATCACAAAGAAATAATACTAGTGCACCTAGTCCTTCTAAAAATAAGAAGAAGAAGAAGAAGAAGAAAAATGATAGGACTTTGCATGCTTCTAGTGAACCTGAAGTAGAAAAACCTCCTAATAATAAAAATGAAACTTCTATCTCTGATGCTGAAACTCATTCTGGTAATGAACATCCACCTAGTGATAATGAAAAAGATAATGATGATGTTCATGAAGATACAGATAATGATGATGTTCATGAAGATACCCAACCAAATAATAAAAAAGAACCAAATAATGATGTTGAGATAGAACCACCTGTTGATCTTGATAACCCACAACCTAAGAATAAAAGATATGATAAAAGAGACTTTGTGGCTAGAAAACACGGTAAAGAAAGAGAACCGTGGGTACAAAAACCTATGCCTTTTCCACCCAAGTCAACTAAAAAAAGAAAGATGATGCAGAATTTGAAAGTTTTGCTGAAATGCTAAGGCCAGTCTTTTTGCGTACTCGCTTGACTGATATCTTGAAAATGCCTCCTTATGCAAAGTATATAAAAGAAATCATCACTAATAAGAGAAAAATACCGGAAGCTGAAATCTTCAGTATGCTTGCTAATTATACTTTCAAAGATGGAGTACCTAAAAAACTTGGAGAACCGGGAATACCAACTATACCTGCT
C165959669	Ensembl_Plants	rRNA	378	480	.	+	.	ID=gene:ENSRNA049468553	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=GAAAAGAGTTATCTTTTCTGCTTAACGGTCTACCAACCCTGAAAACGGTTCAGCCGAAGGTAGGGTCCAGTGGCCGGAAGACTAGTCACAATGGGGAGTAACT	C165959669	Ensembl_Plants	DNA/En-Spm	446	494	265	-	.	ID=1223157	repeat_name=DTC_Jorge_3B_104_M23-2	repeat_type=Type II Transposons	sequence=ATGTTACTAGTCTAAGTTACTCCCCATTGTGACTAGTCTTCCGGCCAC
scaffold313966	Ensembl_Plants	rRNA	1137	1253	.	+	.	ID=gene:ENSRNA049466973	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=TCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGGGGTCCTGCGGAAAAATAGCTCGACGCCAGGA	scaffold313966	Ensembl_Plants	LTR/Gypsy	1109	1312	1456	-	.	ID=826934	repeat_name=sabrina_115G1-1	repeat_type=LTRs	sequence=TTTTTTTCTTTTTCATATTGAAAAAGTAATAAGAATGAGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAGCTATTTTTCCGCAGGACCCCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCA
scaffold143217	Ensembl_Plants	rRNA	211	303	.	+	.	ID=gene:ENSRNA049466434	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GAAACTAGCCAGTCCATTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGAAAGGGTTTCA	scaffold143217	Ensembl_Plants	LTR/Copia	212	341	1066	+	.	ID=1742944	repeat_name=trep3125	repeat_type=LTRs	sequence=AACTAGCCAGTCCATTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGACAAAAGGCTT
scaffold143217	Ensembl_Plants	rRNA	27	118	.	+	.	ID=gene:ENSRNA049466426	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAATCCCATGGGTATGAAACCCATTTGAGCGAGAATAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	scaffold143217	Ensembl_Plants	LTR/Copia	1	134	1099	+	.	ID=1742943	repeat_name=trep3125	repeat_type=LTRs	sequence=GTGATAGGCTTGGTGAGCCAACGTAAAAACTAGCCAATCCCATGGGTATGAAACCCATTTGAGCGAGAATAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTG
scaffold47797	Ensembl_Plants	rRNA	22856	23007	.	+	.	ID=gene:ENSRNA049479788	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TTACGGTGCCCAACTACGTGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAACGGGTTCAAGAACTATGTAGACATGACCGAGACACCTCTCCGGTCAATAACCAAGA	scaffold47797	Ensembl_Plants	LTR/Copia	22951	23188	1791	-	.	ID=1900615	repeat_name=RLC_Angela_3B_055_G17-1	repeat_type=LTRs	sequence=TACGGAACGAGTAAAGAGACATGCTAGTAACGAGATTGAACTAGGTATGAAGATACCAACGATCGAATCTCGGGCAAGTAACATACGATGACAAAGGGAATAACGTGTGTTGTCATTATGGTACGACCGATAAAGATCTTCGTAGAATATGTGGGAACCAATATGAGCATCCAGGTTCCACTCTTGGTTATTGACCGGAGAGGTGTCTCGGTCATGTCTACATAGTTCTTGAACCCG
scaffold50929	Ensembl_Plants	rRNA	19794	19891	.	-	.	ID=gene:ENSRNA049479750	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=TTCCATTACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAANNNNNNNN	scaffold50929	Ensembl_Plants	LTR/Gypsy	19885	20435	3529	+	.	ID=1300469	repeat_name=RLG_Ifis_3B_097_O05-1	repeat_type=LTRs	sequence=ATGGAAAGGGTCAGCAGCATAACCCAGCGAGTCAAGGAGACAATAAGCGTAAGGCGGATGGTAACCCGGAATTTGTGGCCAATGCACAGGGTAACAATCAGAAGCGCAAAGGAAAGCCACCCCCTCGGTTTGGTGGGTCAGGTCCGTCTCTTGAGCAACTACTCAATGAGCCCTGCCCGAAACACGGCACCCGGGAACGACCAGCGACTCGTTTATGGAAGGATTGCGCAATCATGAAGGCTTCAAGAATTCTAATACGTTTGATGGCAATCAAGGCCCAGGCGGCGGCTCAGGAGCTGGCAGCTTTCATGGCCCGGACGGCGGTTCAGGATCCGGTTTTCAGGGAAGCCAGGGTGGTTATAATCAACAACAGTCTGGTCAAGGAGGTCAGCAGCAACAACAGTCGGGTTATCAGAGCCATCCAAAACAGCTAAACAGTGGGCAGTATCACATGTTCACCACAAGTTTGTGTAAACGTGATCAGAAAGTTCATAAGAGGGTTGTGAATTCTGTTGAGCCGGCAGTCCCTCGTTACTTGAGGTGGTCGGAA
scaffold89806	Ensembl_Plants	rRNA	5604	5720	.	-	.	ID=gene:ENSRNA049479701	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=TTTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCACGCGGCAAAATAGCTCGATGCCAGAA	scaffold89806	Ensembl_Plants	LTR/Gypsy	4492	6088	14122	+	.	ID=826738	repeat_name=sabrina_115G1-1	repeat_type=LTRs	sequence=AGCAGGGCTCTGTAGCCACCGAAAACCAATCTAGAGCCGTTCTGGCCCCCTGTCAGAGGGGGGAATCATCTCCGGTGGCCATCTTCATCATCTCAGCGGCCACCACGATGAGGAGGGAGTAGTCCACCCTCGGGGCTGAGGGTTTGTACCAGTAGCTATGTGATCAATCTCTCTCTCTCATGATCTATATCATGGGCTTTGTTAATATAGTCGGATCATATGATGTTTCTCCCCTCTATACTCTTGTCGTGATGAATTGAATCTTTACCCTTTGAAGTTTTGTCTTGTCGGATTGAATATTCAAAGATGAGAACACATGATATATGTCTTGCGGTATGAATAGTTGAGGTGACAATTGGGGTATCTTATTGATTCACTTGTTATATGTTATGGCATTCAACTCGCGGATTCCTGCGATGATATTAGGGTAATCTATGCATAGGGGTTGATGCACGTTTTTATTATCTTTTCTCCGACGGAAACTTTGGGGTCTCTTTATAGTTCTTTGTGTGGACTGAGTATTATGAATATGAATTTGCTTTGGTGTTATCTTAGTACGGACTCTAGGATAGATAGAACGGAAAAAATAGCTTTGTGTTATTTTAGTACGGACTCTTGAATAGATCGAACGAAAATAATAGCTTTGAGGAGGTTTCGGACCCTACAAACAATTCCTATCTTTTGTTCTCCGCTAATAGAAACTAGGGAGTGATTCTTTATTGCACTTTAAGGGATAATCATATGATCCAACTATGTTAGCACTTTGAGAGATTGCACTAGCGAAAGTACGGACCCTAGGCCTTGTTTTTAAGCATTGAAATGGAGCTAATGAGGAATAAATCACTTCTACTTAAACTTTTTTGAGTGAAATACCAACCAACACATAAAGCAATAACCAGATAGATAGAATGACAACAGGTAATACGAAGATATCAACACAGCCGGAGTCACAAGGCTCGATAATGACCAATGGGTTAGGATCTGAGGAAGCTTAGTTTGGATGATGGAATATTCGTTGTTCTGATTGTTGACCTTTGCATTTAGATTTGGATCTTTTTCTTATTTCAAAATAGTGAAAAAAATCTAATAAGAGGTGTTAAGCTTTTTATCATTCTGGCATCGAGCTATTTTGCCGCGTGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAAAATATCGAACCATGAACGAGGAAAGGCATACCGTTTTTGTGCCCATTTACTATTTGCTACCTTGCTGTTTTTATTTATTCAGATTATCAAAATATATTTCTACCATCCGTATTACACTTTTATCACCATCTCTTCGCCGAACTAGTGCACCTATACAATTTGCCATTGTATTGGGTTTGCTGGGGACACAAGGGATTTCTTATATTTGGTTGCAGGGTCATTTTAGAGAGACCATCTTCATCCTACACCTCTCACGGATTGATAAATCTTATGTCATCCACTTGAGGGAAAATTGCTACTGTCCTACAAAACTCTGCGCTTGGAGGCCCAACACGTGTCTACAAGAATAAAGTTGTGTAGTAGACATCA
scaffold54566	Ensembl_Plants	tRNA	36189	36260	.	+	.	ID=gene:ENSRNA049442501	Name=tRNA-Asp	biotype=tRNA	description=tRNA-Asp for anticodon GUC	sequence=GTCGTTGTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGCG	scaffold54566	Ensembl_Plants	LTR	36174	36260	306	-	.	ID=2242308	repeat_name=LTR_HVVMRXALLrA0187C04_ipk26_c1_3894	repeat_type=LTRs	sequence=CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGACTTTGATGCTGTTTT
scaffold16073	Ensembl_Plants	tRNA	6060	6133	.	+	.	ID=gene:ENSRNA049444805	Name=tRNA-Asn	biotype=tRNA	description=tRNA-Asn for anticodon GUU	sequence=GCTGGAATAGCTCAGTTGGCTAGAGCGTGTGGCTGTTAACCACAAGGTCGGAGGTTCAAGACCTCCTTCTAGTG	scaffold16073	Ensembl_Plants	LTR	6056	6141	643	-	.	ID=2239729	repeat_name=LTR_Mt_chr_05_619	repeat_type=LTRs	sequence=AAAAAACTCACTAGAAGGAGGTCTTGAACCTCCGACCTTGTGGTTAACAGCCACACGCTCTAGCCAACTGAGCTATTCCAGCTAT
scaffold262405	Ensembl_Plants	tRNA	19229	19301	.	+	.	ID=gene:ENSRNA049445001	Name=tRNA-Thr	biotype=tRNA	description=tRNA-Thr for anticodon UGU	sequence=GCCCGCTTAGCTCAGAGGTTAGAGCATCGCATTTGTAATGCGATGGTCATCGGTTCGATTCCGATAGCCGGCT	scaffold262405	Ensembl_Plants	LTR	19140	19308	736	+	.	ID=2079991	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ATAACTAAAAATGAGCGGTTAATAGCTAAGATTTCAGTAATTTACTTTAAAATGGAATTCCTATGCATGTACAATTTATATTATGTAAGCCCGCTTAGCTCAGAGGTTAGAGCATCGCATTTGTAATGCGATGGTCATCGGTTCGATTCCGATAGCCGGCTTTTCTCT
scaffold262405	Ensembl_Plants	tRNA	88	161	.	+	.	ID=gene:ENSRNA049445006	Name=tRNA-Trp	biotype=tRNA	description=tRNA-Trp for anticodon CCA	sequence=GCGCTCTTAGTTCAGTTCGGTAGAACGTGGGTCTCCAAAACCCAATGTCGTAGGTTCAAATCCTACAGGGCGTG	scaffold262405	Ensembl_Plants	LTR/Copia	68	179	826	-	.	ID=2236355	repeat_name=LTR_AC191345.3_7798	repeat_type=LTRs	sequence=ACAAAACAAGAGCGGAATCACGCCCTGTAGGATTTGAACCTACGACATTGGGTTTTGGAGACCCACGTTCTACCGAACTGAACTAAGAGCGCTTTTTTATTACAATAAATA
scaffold88609	Ensembl_Plants	tRNA	54249	54330	.	-	.	ID=gene:ENSRNA049445113	Name=tRNA-Ser	biotype=tRNA	description=tRNA-Ser for anticodon AGA	sequence=GTGGTCGTGCCGGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTTTGCCCGCGCAGGTTCGAATCCTGCCGACCACG	scaffold88609	Ensembl_Plants	LTR	54249	54336	686	+	.	ID=2236308	repeat_name=LTR_Al_scaffold_0001_223	repeat_type=LTRs	sequence=GTGGTCGGCAGGATTCGAACCTGCGCGGGCAAAGCCCACATGATTTCTAGTCATGCCCGATAACCACTCCGGCACGACCACTGCTTG
scaffold55701	Ensembl_Plants	tRNA	41937	42010	.	+	.	ID=gene:ENSRNA049445229	Name=tRNA-Asn	biotype=tRNA	description=tRNA-Asn for anticodon GUU	sequence=GCTGGAGTAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCATAAGGTCGGAGGTTCGAGCCCTCCTTCTAGCG	scaffold55701	Ensembl_Plants	LTR	41931	42017	674	-	.	ID=2239730	repeat_name=LTR_Mt_chr_05_619	repeat_type=LTRs	sequence=AAAAAATCGCTAGAAGGAGGGCTCGAACCTCCGACCTTATGGTTAACAGCCACACGCTCTAACCAACTGAGCTACTCCAGCTTCGT
scaffold152738	Ensembl_Plants	tRNA	32901	32972	.	-	.	ID=gene:ENSRNA049446363	Name=tRNA-Asp	biotype=tRNA	description=tRNA-Asp for anticodon GUC	sequence=GTCGTTGTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGCG	scaffold152738	Ensembl_Plants	LTR	32900	32973	625	+	.	ID=2225741	repeat_name=LTR_Gr_chr_11_2758	repeat_type=LTRs	sequence=CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGACT
Pt	Ensembl_Plants	tRNA	64148	64221	.	-	.	ID=gene:ENSRNA049448644	Name=tRNA-Trp	biotype=tRNA	description=tRNA-Trp for anticodon CCA	sequence=GCGCTCTTAGTTCAGTTCGGTAGAACGCGGGTCTCCAAAACCCGATGTCGTAGGTTCAAATCCTACAGAGCGTG	Pt	Ensembl_Plants	LTR/Copia	64144	64225	719	+	.	ID=2236353	repeat_name=LTR_AC191345.3_7798	repeat_type=LTRs	sequence=AATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGCGTTCTACCGAACTGAACTAAGAGCGCTTTC
scaffold64139	Ensembl_Plants	tRNA	91287	91358	.	+	.	ID=gene:ENSRNA049450259	Name=tRNA-Asp	biotype=tRNA	description=tRNA-Asp for anticodon GUC	sequence=GTCGTTGTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGCG	scaffold64139	Ensembl_Plants	LTR	91286	91358	625	-	.	ID=2225739	repeat_name=LTR_Gr_chr_11_2758	repeat_type=LTRs	sequence=CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGAC
scaffold64139	Ensembl_Plants	tRNA	70795	70866	.	+	.	ID=gene:ENSRNA049450269	Name=tRNA-Asp	biotype=tRNA	description=tRNA-Asp for anticodon GUC	sequence=GTCGTTGTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGCG	scaffold64139	Ensembl_Plants	LTR	70794	70866	625	-	.	ID=2225738	repeat_name=LTR_Gr_chr_11_2758	repeat_type=LTRs	sequence=CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGAC
scaffold123404	Ensembl_Plants	tRNA	2216	2289	.	-	.	ID=gene:ENSRNA049438931	Name=tRNA-Ile	biotype=tRNA	description=tRNA-Ile for anticodon GAU	sequence=AGTCCTGTAGCTCAGCTGGTTAGAGCGCTGGTCCGATGTACCAGAAGTCACGGGTTCAATCCCCGTCGGGACTA	scaffold123404	Ensembl_Plants	LTR	2207	2290	270	+	.	ID=2243049	repeat_name=LTR_Al_scaffold_0002_362	repeat_type=LTRs	sequence=AAAAGAAATAGTCCCGACGGGGATTGAACCCGTGACTTCTGGTACATCGGACCAGCGCTCTAACCAGCTGAGCTACAGGACTT
scaffold120790	Ensembl_Plants	tRNA	12059	12132	.	+	.	ID=gene:ENSRNA049436517	Name=tRNA-Met	biotype=tRNA	description=tRNA-Met for anticodon CAU	sequence=GGCTACTTAGCTCAGCTGGTTAGAGCACAGCACTCATAATGCTGGGGTCACAGGTTCGATTCCCGTAGTAGCCA	scaffold120790	Ensembl_Plants	LTR	12058	12132	347	-	.	ID=2243048	repeat_name=LTR_Al_scaffold_0002_362	repeat_type=LTRs	sequence=TGGCTACTACGGGAATCGAACCTGTGACCCCAGCATTATGAGTGCTGTGCTCTAACCAGCTGAGCTAAGTAGCC
scaffold197717	Ensembl_Plants	tRNA	2766	2839	.	-	.	ID=gene:ENSRNA049435916	Name=tRNA-Ile	biotype=tRNA	description=tRNA-Ile for anticodon GAU	sequence=GGGCTTGTAGCTCAGTTGGTTAGAGCACACGCTTGATAAGCGTGGGGTCGGAGGTTCAAGTCCTCCCAGGCCCA	scaffold197717	Ensembl_Plants	LTR	2765	2840	251	+	.	ID=2239731	repeat_name=LTR_Mt_chr_05_619	repeat_type=LTRs	sequence=TGGGCCTGGGAGGACTTGAACCTCCGACCCCACGCTTATCAAGCGTGTGCTCTAACCAACTGAGCTACAAGCCCA
Scaffold332218	Ensembl_Plants	tRNA	216	289	.	-	.	ID=gene:ENSRNA049435577	Name=tRNA-Ile	biotype=tRNA	description=tRNA-Ile for anticodon AAU	sequence=GGTCGATTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGCCGTGGGTTCGACCCCCATATTGACCA	Scaffold332218	Ensembl_Plants	LTR	183	314	504	+	.	ID=2243055	repeat_name=LTR_Al_scaffold_0002_362	repeat_type=LTRs	sequence=AAAGCTGGACAAAAGCAAAAGAAAAGAAATGATGGTCAATATGGGGGTCGAACCCACGGCCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAATCGACCTGATTGTATATGTCACGATAAGCTC
scaffold331952	Ensembl_Plants	tRNA	115	188	.	-	.	ID=gene:ENSRNA049435368	Name=tRNA-Ile	biotype=tRNA	description=tRNA-Ile for anticodon GAU	sequence=GGGCCCGTAGCTCAGTTGGTTAGAGCACACGCTTGATAAGCGTGGGGTCGGTAGTTCGAGTCTACCCGGGCCCA	scaffold331952	Ensembl_Plants	LTR	114	194	245	+	.	ID=2246046	repeat_name=LTR_AC191363.2_7835	repeat_type=LTRs	sequence=TGGGCCCGGGTAGACTCGAACTACCGACCCCACGCTTATCAAGCGTGTGCTCTAACCAACTGAGCTACGGGCCCATCTCG
C161820272	Ensembl_Plants	tRNA	17	90	.	-	.	ID=gene:ENSRNA049434885	Name=tRNA-Asp	biotype=tRNA	description=tRNA-Asp for anticodon GUC	sequence=GGAGTGGTAGTTCAGTTGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCACTCCG	C161820272	Ensembl_Plants	LTR/Gypsy	17	97	362	+	.	ID=2228681	repeat_name=LTR_AC190975.3_7128	repeat_type=LTRs	sequence=GGAGTGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCACTCCTGGCAGG
scaffold296525	Ensembl_Plants	pre_miRNA	1224	1329	.	+	.	ID=gene:ENSRNA049482227	Name=MIR169_2	biotype=pre_miRNA	description=microRNA MIR169_2	sequence=AAAATAACATGGCCAAAGAAAGTTATGCCTACAAAATCATATAGTCTGGCTATGCTCAGACTATATGATTTTGTAGGCATAACTTTCTTTGGCCATTTTATTTTGT	scaffold296525	Ensembl_Plants	LTR	1280	1373	719	+	.	ID=1090213	repeat_name=LTR_AC200770.1_9	repeat_type=LTRs	sequence=AGACTATATGATTTTGTAGGCATAACTTTCTTTGGCCATTTTATTTTGTGAAGACATAATTGCTTAGTTAGTATGCTTGAAGTATTATTATTT
scaffold296525	Ensembl_Plants	pre_miRNA	1224	1329	.	+	.	ID=gene:ENSRNA049482227	Name=MIR169_2	biotype=pre_miRNA	description=microRNA MIR169_2	sequence=AAAATAACATGGCCAAAGAAAGTTATGCCTACAAAATCATATAGTCTGGCTATGCTCAGACTATATGATTTTGTAGGCATAACTTTCTTTGGCCATTTTATTTTGT	scaffold296525	Ensembl_Plants	LTR	74	1280	9581	-	.	ID=1787426	repeat_name=LTR_AC200785.1_25	repeat_type=LTRs	sequence=GAGCATAGCCAGACTATATGATTTTGTAGGCATAACTTTCTTTGGCCATGTTATTTTGAGAAGACATGATTGCTTAGTTAGTATGCTTGAAGTATTATTATTTTTATGTCAATATTAAACTTTTATCTTGAATCTTTCGAATCTGGACATTCATGCCACAATAAAGAAAAATTACATTGAGAAATATGTTAGAAAGCATACCACATCAAAAATTCTTCTTTTATCATTTACCAACTCGAGGACGAGCAGGAATTAAGCTTGGGGATGCTTGATACGTCACCAACATATCTATAATTTTTGATTGCTCCATGCTATTATATTATATATTTTGGATGTCAATGGGCTTTATTTTACACTTTTATATCATTTTTGGGACTAACCTACTAACCGGAGGCCCAGCCCAAATTGTTGTTTTTTTGCCTATTTTAGGGTTTCGAAGAAAAGGAATATCAAACGGAGTCCAAACGGAATGAAACCTTCGGGAACGTGATTTTCTCAACAAACGTGATCTAGGAGAGTGGGCGTCAAGAAACAACGGAGTAAGCCACGAGGCAGGGGGTGCGCCTACCCCCTTGGGTGCGCCCTCCACCCTCGTGGGCCCTTCGTTGCTCCACCGACGTACTTCTTCCTCTTATATATATATCCACGTACCCCCCAAACATCCAGGAGCACCACGAAAACCTAATTCCACCGTCGCAACCTTCTGTACCCGATAGATCCCATCTCGGGGCCTTTTCTGGAGCTCCGCCGGAGCGGGCATTGATCACGGAGGGCCTCTACATCAACTCAATGGCCTCTCCGGTGATGTGTGAGTAGTTTACTTCAGACCTTCGGGTCCATAGTTATTAGCTAGATGGCTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCCTCGATCTTCTTGGAGATCTATTCGACGTAATCTTCTTTTGCGGTGTGTTTGTCGAGATCCAATAAATTGTGGGTTTATGATCCAGATTATGTATAAACAATATTTGATTCTCCTCTGAATTCTTTTATGTATGATTGATTTATCTTTGCAAGTCTCTTCGAATTATCAGTTTGGTTTGGCCTACTAGATTGATCTTTCTTGCAATGGGAGAAGTGCTTAGCTTTGGGTTCAATCTTGTGATGCTCGATCCCAGTGATAGAGAGGAAACTGACACGTATTGTATTGTTGCCATCGAGGATAAAAAGATGGGG
scaffold296525	Ensembl_Plants	pre_miRNA	1224	1329	.	+	.	ID=gene:ENSRNA049482227	Name=MIR169_2	biotype=pre_miRNA	description=microRNA MIR169_2	sequence=AAAATAACATGGCCAAAGAAAGTTATGCCTACAAAATCATATAGTCTGGCTATGCTCAGACTATATGATTTTGTAGGCATAACTTTCTTTGGCCATTTTATTTTGT	scaffold296525	Ensembl_Plants	LTR/Gypsy	1283	1392	495	+	.	ID=2043378	repeat_name=RLG_Sabrina_3B_058_I14-1	repeat_type=LTRs	sequence=CTATATGATTTTGTAGGCATAACTTTCTTTGGCCATTTTATTTTGTGAAGACATAATTGCTTAGTTAGTATGCTTGAAGTATTATTATTTTAAAGGCTTGAAGCCTTTA
C160178054	Ensembl_Plants	pre_miRNA	21	146	.	-	.	ID=gene:ENSRNA049464611	Name=mir-166	biotype=pre_miRNA	description=mir-166 microRNA precursor	sequence=TTGGAGAAGGATGAACATTGGAGCAAGAACACGCATTCGTTTAGACTTTGGGTTTTGTTTAGATTAAAAGTTCGCCATAGCTGCAACTTCATGCGTGTTCTTGCTCCAATGTTCATCCTTCTCCAA	C160178054	Ensembl_Plants	LTR/Gypsy	32	110	475	-	.	ID=1984810	repeat_name=RLG_Cereba_3B_100_L17-2	repeat_type=LTRs	sequence=TCGTTTAGACTTTGGGTTTTGTTTAGATTAAAAGTTCGCCATAGCTGCAACTTCATGCGTGTTCTTGCTCCAATGTTC
scaffold45912	Ensembl_Plants	SRP_RNA	75441	75575	.	+	.	ID=gene:ENSRNA049478954	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=TGTCCTCATCATGTGGTGGACCGCTGGGGCCTATGCGAAAGCTGGGCCTCATTGTTCATAATGTGGTAGGCAAAGCGTGAAGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACG	scaffold45912	Ensembl_Plants	LTR/Gypsy	74338	75451	9252	-	.	ID=1691901	repeat_name=RLG_Cereba_3B_100_L17-4	repeat_type=LTRs	sequence=TGATGAGGACATCAATACCATTGTTACACCCACAGCCCCTACTGTTACATATACTGGACCAATTACTAGAGCTCGCGCACGCCAATTAAATTATCAGGTACTTCCGTTTCTTGGTAATGATTCTAATGTTCATGAGATTATGATGCTGCCTAAATTGGATACATTTGTTTTGCTTACAAATGAAGGGCCTAGCTTGGAGAAGGATGAACATTGGAGCAAGAACACGCATGGAGTTGATGGCATGCGCAAGGGGATCAAGAACGGAGTTACAAGTGATGATTTCAGGATTTGGAAGCCGCCATAAGGAGTGCATGAAGCCTTGGACGAAATATACAAGATGCCACTTCATAATATTCGTCCATAGGCTATTCTAGGTGCTGCGTCACCTTATTAATGGGCCAGGCCCATGTAATTTCGAAATACTTAAGTATAGGCTATTTTTAGAGTCCGTATGTGTGGGGAAACAAGAGTTAGGGTTGGTTTCGGACCCCACCCTCAAGGGCCACGAAATTCCCCTCTCTTCCTCCATATATACAGCCCTTAGGGCGTCGTTTAGACTTTGGGTTTTGTTTAGATTAAAAGTTCGCCATAGCTGCAACTTCGCGTACTTCGTTTGTGTCCAACGACCAGACCAAGACGTCACAGAACCCCACCTTGATCAATAAAGCTTTCATCTTATATTCGCAATATCCAGATTGCAATCTCAGTTTCTTGCTTGTTCTTCGTTTGCTCGCAGGAAACAGGCCCTCGTGGTCAGGTTGATCGTGCTCCGGCGTGGTCAATAACCCCTCGGAAGTTGGTTTAGCGATTGCTAAGGCGCGACGTCTCGCACGTTCGTAGTCGGATCGTCAAGGTCGACTCCCACAGAAAACGATAGCCACCATCTCATCGAAACATCGGGACACCTTTGCCTCTATCAAGTGGTATCAGATTTCCAGGTTGCTCGGTGAGATTTTACAGTTTTTCGTAGATTAGATCGAGTCTGTTCTTCATACCTACAGTCCACGAAAAAGCCACAAAAAAAAAAATTAGGGTTAGTTCATCATATCCGAACCAATCTGAGCCTTTGCATAGTCTTTTCAGTATTTTGCTTTGTTGAATTTGCGGTTGCAT
scaffold45912	Ensembl_Plants	SRP_RNA	68012	68338	.	+	.	ID=gene:ENSRNA049478953	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCAAGCTTAGTTGCGCGAGCTTGTAACCCAAGTGGGGGCATTAAAGTGGTGAGGACGTTGCCGTAGTGTTGCGGGCCTGATTTGGTTGTGATATTGCTGGCCCGCTCGTTTCAAGTTGTGTGGTGATAGAGGCTAAGGTGTCTCGATGTTTCGATGAGATGGTGGCTATCGTTTTCTGTGGGAGTCGACCTTGACGATCCGACTAGGAACGTGCGAGACGTCGCGCCTTAGCAATCGCTAAACCAACTTCCGAGGGTTATTGACCACGCCGGAGCACGATCAACCTGACCACGAGGGTCTGTTTCCTGCAAGCAAACGAAGAACAA	scaffold45912	Ensembl_Plants	LTR/Gypsy	68136	69014	6816	-	.	ID=1691900	repeat_name=RLG_Cereba_3B_100_L17-4	repeat_type=LTRs	sequence=TGATGAGGACATCAATACCATTGTTACACCCACAGCCCCTACTGTTACATATACTGGACCAATTACTAGAGCTCGCGCACGCCAATTACATTACCAGGTACTTTCGTTTCTTGGTAATGATTCTAATGTTCATGAGATTATGATGCTGCCTAAATTGGATACATTTGTTTTGCTTACAAATGAAGGGCCTAGCTTGGAGAAGGATGAACATTGGAGCAAGAACACGCATGGAGTTGATGGCATGCGCAAGGGGATCAAGAACGGAGTTACAAGTGATGATTTCAGGACTTTGAAGCCGCCATAAGGAGTGCATGAAGCCTTGGACGAAATATACAAGATGCCACTTCATAATATTCGTCCATAGGCTATTCTAGGTGCTGTGTCACCTTATTAATGGGCCAGGCCCATGTAATTTCGAAATACTTAAGTATAGGCTATTTTTAGAGTCCATATGTGTGGGGAAACAAGAGTTAGGGTTGGTTTCGGACCCCACCCTCAAGGGCCACGAAATTCCCCCCTCTTCCTCCATATATACAGCCCTTAGGGCGTCGTTTAGACTTTGGGTTTTGTTTAGATTAAAAGTTTGCCATAGCTGCAACTTCGCGTACTTCGTTTGTGTCCAACGACCAGACCAAGACGTCACAGAACCCCACCTTGATCAATAAAGTTTTCATGCTTGTTCTTCGTTTGCTTGCAGGAAACAGACCCTCGTGGTCAGGTTGATCGTGCTCCGGCGTGGTCAATAACCCTCGGAAGTTGGTTTAGCGATTGCTAAGGCGCGACGTCTCGCACGTTCCTAGTCGGATCGTCAAGGTCGACTCCCACAGAAAACGATAGCCACCATCTCATCGAAACATCGAGACACCTTAGCCTCTATC
scaffold63806	Ensembl_Plants	SRP_RNA	65721	65913	.	-	.	ID=gene:ENSRNA049476431	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GTGGAGCCTTGGGGTCGAAACTTGGAGTAAACGCCTCCACAAAGTCGGTTTCACCCGAAAGGCAAGAGTCCTTCTCGGACTCCAGGGCCAGACGCCAGGGTTCCCGGCATCTGGACCCAGACGCCAGGAACCCTGGCGTCTGGCCCTGGAGTTCGAGAAGGACTCTTGCCTTTCGGGTGAAACCGACTTTGTG	scaffold63806	Ensembl_Plants	LTR/Copia	65759	66359	4575	+	.	ID=1958108	repeat_name=RLC_Angela_3B_028_F08-1	repeat_type=LTRs	sequence=GAACTCCAGGGCCAGACGCCAGGGTTCCTGGCGTCTGGGTCCAGATGCCGGGAACCCTGGCGTCTGGCCCTGGAGTCCGAGAAGGACTCTTGCCTTTCGGGTGAAACCGACTTTGTGGAGGCGTTTACTCCAAGTTTCGACCCCAAGGCTCCACATATCAATAGAGGGGTAGGACAGGGCTAGCACCAAAGAGACATCAAGAAACACCAAGCCGTGTGCCGGCAACCCCGTCCCCTCTAGTTTATCCTCCGTCATAGTTTTCGTAGTGCTTAGGCGAAGCCCTGCGGAGATTGTTCTTCACCAACAACGTCACCACGCCGTCGTGCTGCCGGAACTCATCTACTACTTCGCCCCTCTTGCTGGATCGAGAAGGCGAGGACGTCACCGAGCCGAACGTGTGCAGTACTCGGAGGTACCGTGCTTTCGGTACTTGGATCGGTCGGACGTGAAGACGTACGACTACATCAACCGCGTTGATATAACGCTTCCGCGAACGGTCTACGAGGGTACTTAGACAACACTCTCCCCTCTCGTTGCTATGCATCTCCATGATCCTGCGTGTGCGTAGGAATTTTTTTGAAATTACTACATTCCCCAACA
scaffold63806	Ensembl_Plants	SRP_RNA	65721	65913	.	-	.	ID=gene:ENSRNA049476431	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GTGGAGCCTTGGGGTCGAAACTTGGAGTAAACGCCTCCACAAAGTCGGTTTCACCCGAAAGGCAAGAGTCCTTCTCGGACTCCAGGGCCAGACGCCAGGGTTCCCGGCATCTGGACCCAGACGCCAGGAACCCTGGCGTCTGGCCCTGGAGTTCGAGAAGGACTCTTGCCTTTCGGGTGAAACCGACTTTGTG	scaffold63806	Ensembl_Plants	LTR	65693	65838	1169	-	.	ID=2023715	repeat_name=LTR_BA_57	repeat_type=LTRs	sequence=CGGACTCCAGGGCCAGACGCCAGGGTTCCCGGCATCTGGACCCAGACGCCAGGAACCCTGGCGTCTGGCCCTGGAGTTCGAGAAGGACTCTTGCCTTTCGGGTGAAACCGACTTTGTGGAGGCTTTTACTCCAAGTTTCGACCCC
scaffold37154	Ensembl_Plants	SRP_RNA	1751	2054	.	-	.	ID=gene:ENSRNA049482587	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GATGAGCTCAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAAGTGATGTGGACGCTGTTGTAGCGCTGCGGGCCTGGTCTGGATATGTTACTGCTGGCCTGCCCGTTCCAAGTTGCGTAGTGGACCGGCTGAGGCCTATGCGAAAGCTGGGCCTCACGGTCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCACTTCCAACGGTGGAAGGATAACGAGCCGCTGCACTCTTAGGCTGCTTGGGCCTCGCAGGCTACTTCAGCGAACCATCATTTTC	scaffold37154	Ensembl_Plants	LTR	1737	2089	769	+	.	ID=2242296	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=TAAGAAAAGGAAAGAAAATGATGGTTCGCTGAAGTAGCCTGCGAGGCCCAAGCAGCCTAAGAGTGCAGCGGCTCGTTATCCTTCCACCGTTGGAAGTGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCCACATTATGGACCGTGAGGCCCAGCTTTCGCATAGGCCTCAGCCGGTCCACTACGCAACTTGGAACGGGCAGGCCAGCAGTAACATATCCAGACCAGGCCCGCAGCGCTACAACAGCGTCCACATCACTTTAATGCCCCCACTCGGGTTACAAGCTCTCGCAACTGAGCTCATCGAATGAAGTAAGTGGAGGCTGCTATTTAAGCTGGT
C165529494	Ensembl_Plants	SRP_RNA	97	317	.	-	.	ID=gene:ENSRNA049482044	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAAGTGATGTGGCCTATGCGAAAGCTGGGCCTCACGGTCCATAAGGTGGCAGGCACAGCGTGAGGCTGTCTTCACATAGCAGCGACAACTGCCCACTTCCAACGGTGGAAGGATAACGAGCCGCTGCACTCTTAGGTCGCTTGGGCCTCGCAGCCTACTTCAGCGAACCATCATTTTC	C165529494	Ensembl_Plants	LTR	83	352	510	+	.	ID=2242300	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=TAAGAAAAGGAAAGAAAATGATGGTTCGCTGAAGTAGGCTGCGAGGCCCAAGCGACCTAAGAGTGCAGCGGCTCGTTATCCTTCCACCGTTGGAAGTGGGCAGTTGTCGCTGCTATGTGAAGACAGCCTCACGCTGTGCCTGCCACCTTATGGACCGTGAGGCCCAGCTTTCGCATAGGCCACATCACTTTAATGCCCCCACTCGGGTTACAAGCTCTCGCAACTGAGCTCGGCAAATGAAGTAAGTGGAGGCTGCTATTTAAGCTGGT
C165529494	Ensembl_Plants	SRP_RNA	97	317	.	-	.	ID=gene:ENSRNA049482044	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAAGTGATGTGGCCTATGCGAAAGCTGGGCCTCACGGTCCATAAGGTGGCAGGCACAGCGTGAGGCTGTCTTCACATAGCAGCGACAACTGCCCACTTCCAACGGTGGAAGGATAACGAGCCGCTGCACTCTTAGGTCGCTTGGGCCTCGCAGCCTACTTCAGCGAACCATCATTTTC	C165529494	Ensembl_Plants	DNA/En-Spm	313	387	235	+	.	ID=2244407	repeat_name=trep4397	repeat_type=Type II Transposons	sequence=CGGCAAATGAAGTAAGTGGAGGCTGCTATTTAAGCTGGTCAAATGCGTCCTCGGTTGGCGAGGCGGGACTAAAC
scaffold272459	Ensembl_Plants	SRP_RNA	24247	24534	.	+	.	ID=gene:ENSRNA049481165	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=TTTGCCTCACACATATATGAGGTTGATTTGCGTACTCTTTTTGTACTATCAAGGCGGTGGTTGTGAAGTTTTAAGGTTTGTCCTAAGTCAAAACTAGTTTAAGTTTAACGGTGAAAGTTGGATCTATGCGAAAGTTGGGTCTCACGGTCCATAATGTGGTAGGCATAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGTCCGCTGCACTCCTAGGCCACTTGGGCCTCGCAGCCTACTCCAACGAACCATCATTTTT	scaffold272459	Ensembl_Plants	LTR	24398	24501	441	-	.	ID=2242294	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=CCCAAGTGGCCTAGGAGTGCAGCGGACCGTTATCCTTCCACCGTTGGAAGCGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTATGCCTACCACATT
scaffold272459	Ensembl_Plants	SRP_RNA	23859	24243	.	+	.	ID=gene:ENSRNA049481162	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGTGAGCTTGTAACCTGAGCGGGGGCATTAAGGTGATGTGGATGCTGTTATAGTGCTGCGGGCCTGGTCTTGATAACGGTCCGCTGCACTCCTAGGCCACTTGTTTTTCTTACCGATAATACGGCAACAACTCCATTTCAAAATAGTGAAGTTTTAAGGTTTGTCCTAAGTCAAAACTAGTTTAAGTTTAACGGTGAAAGTTGGATCTATGCGAAAGTTGGGTCTCACGGTCCATAATGTGGTAGGCATAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGTCCGCTGCACTCCTAGGCCACTTGGGCCTCGCAGCCTACTCCAACGAACCATCATTTTT	scaffold272459	Ensembl_Plants	DNA/TcMar	24003	24064	246	+	.	ID=2220451	repeat_name=trep2292	repeat_type=Type II Transposons	sequence=TCCATTTCAAAATAGTGAAGTTTTAAGGTTTGTCCTAAGTCAAAACTAGTTTAAGTTTAAC
scaffold272459	Ensembl_Plants	SRP_RNA	23859	24243	.	+	.	ID=gene:ENSRNA049481162	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGTGAGCTTGTAACCTGAGCGGGGGCATTAAGGTGATGTGGATGCTGTTATAGTGCTGCGGGCCTGGTCTTGATAACGGTCCGCTGCACTCCTAGGCCACTTGTTTTTCTTACCGATAATACGGCAACAACTCCATTTCAAAATAGTGAAGTTTTAAGGTTTGTCCTAAGTCAAAACTAGTTTAAGTTTAACGGTGAAAGTTGGATCTATGCGAAAGTTGGGTCTCACGGTCCATAATGTGGTAGGCATAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGTCCGCTGCACTCCTAGGCCACTTGGGCCTCGCAGCCTACTCCAACGAACCATCATTTTT	scaffold272459	Ensembl_Plants	LTR	23824	23939	330	-	.	ID=2242292	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=CCAGGCCCGCAGCACTATAACAGCATCCACATCACCTTAATGCCCCCGCTCAGGTTACAAGCTCACGCAACTGAGCTCGGCAAATGAAGCAGGTGGAGGTAGCTATTTAAGTTGG
scaffold272459	Ensembl_Plants	SRP_RNA	23859	24243	.	+	.	ID=gene:ENSRNA049481162	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGTGAGCTTGTAACCTGAGCGGGGGCATTAAGGTGATGTGGATGCTGTTATAGTGCTGCGGGCCTGGTCTTGATAACGGTCCGCTGCACTCCTAGGCCACTTGTTTTTCTTACCGATAATACGGCAACAACTCCATTTCAAAATAGTGAAGTTTTAAGGTTTGTCCTAAGTCAAAACTAGTTTAAGTTTAACGGTGAAAGTTGGATCTATGCGAAAGTTGGGTCTCACGGTCCATAATGTGGTAGGCATAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGTCCGCTGCACTCCTAGGCCACTTGGGCCTCGCAGCCTACTCCAACGAACCATCATTTTT	scaffold272459	Ensembl_Plants	LTR	24107	24210	441	-	.	ID=2242293	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=CCCAAGTGGCCTAGGAGTGCAGCGGACCGTTATCCTTCCACCGTTGGAAGCGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTATGCCTACCACATT
scaffold272459	Ensembl_Plants	SRP_RNA	18237	18540	.	+	.	ID=gene:ENSRNA049481157	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGAGAGCTTGTAATCCGAATGGGGGCATTAAGATGATGTGGACGCTGTTGTAGTGTTGCGGGCCTGGTCTGGGTGTGCTACTGCTGGCCTGCCCGTTCCAAGTTGTGTAGTGGGCCGCTTGGGGCCTATGCGAAAGCTGGGCCTCACGGTCCATAATGTGGGAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACAGGCCGCTGCACTCCTTGGCCGCTTGGGCCTCGCAGCCTACTCTAGTGGACCATCACTTTT	scaffold272459	Ensembl_Plants	LTR	18202	18542	766	-	.	ID=2242291	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AAAAAAGTGATGGTCCACTAGAGTAGGCTGCGAGGCCCAAGCGGCCAAGGAGTGCAGCGGCCTGTTATCCTTCCACCGTTGGAAGCGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTCCCACATTATGGACCGTGAGGCCCAGCTTTCGCATAGGCCCCAAGCGGCCCACTACACAACTTGGAACGGGCAGGCCAGCAGTAGCACACCCAGACCAGGCCCGCAACACTACAACAGCGTCCACATCATCTTAATGCCCCCATTCGGATTACAAGCTCTCGCAACTGAGCTCGGCGAATGAAGTAGGTGGAGGTGGCTATTTAAGCTGG
scaffold266909	Ensembl_Plants	SRP_RNA	131	178	.	-	.	ID=gene:ENSRNA049480668	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCC	scaffold266909	Ensembl_Plants	LTR	45	177	481	+	.	ID=2242298	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AAAAAATGATGGTTCGCTAGAGTAGGCTACGAGGCCCAAGCGGCGTAGGAGTGCAGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCC
scaffold269942	Ensembl_Plants	SRP_RNA	359	579	.	+	.	ID=gene:ENSRNA049465980	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAAGTGATGTGGCCTATGCGAAAGCTGGGCCTCACGGTCCATAAGGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCACTTCCAACGGTGGAAGGATAACGAGCCGCTGCACTCTTAGGTCGCTTGGGCCTCGCAGCCTACTCCAGTGAACCATCATTTTT	scaffold269942	Ensembl_Plants	LTR	324	599	604	-	.	ID=2242302	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AATAGTCAAAAGAAAAGAAAAAAAATGATGGTTCACTGGAGTAGGCTGCGAGGCCCAAGCGACCTAAGAGTGCAGCGGCTCGTTATCCTTCCACCGTTGGAAGTGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCCACCTTATGGACCGTGAGGCCCAGCTTTCGCATAGGCCACATCACTTTAATGCCCCCACTCGGGTTACAAGCTCTCGCAACTGAGCTCGGCGAATGAAGTAAGTGGAGGCTGCTATTTAAGCTGG
scaffold41364	Ensembl_Plants	snoRNA	119801	120002	.	+	.	ID=gene:ENSRNA049479204	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=TCGACCGTAAGTACCGTACCGACGACTTGTCCTGTGGCTGCAATGTAGGCAAGCACTTCAGTCTGGTTGATGCATTCTGACCTCTGGCCAGAGCATGATTAACGGCCTGGATCACCTGATGGGTGCCATCCGACGGCTGTAGAGGATCGTTCCTCTCCAGTTCACATTGGTGCAGGGTGGCTCAGAGGTTGTCTGACAGACT	scaffold41364	Ensembl_Plants	LTR	119137	119855	6003	-	.	ID=1010707	repeat_name=LTR_EF081026.1_411	repeat_type=LTRs	sequence=TGCTTGCCTACATTGCAGCCACAGGACAAGTCGTCGGTACGGTACTTACGGTCGAGCGGGAATAAGACGAGAAAACTTTCAAAGTTCAGCGCCCAGTGTATTATATTTCTGAAGTCTTGACCCCATCGAAGCAAAGATATCCTCATTATCAGAAGCTCGTATATGGGATTTATATGACCACAAAGAAAGTTGCCCACTACTTCTCTGATCATTCCATTACAGTCATCAGCGACGCTCCGTTGTCAGAGATCTTGCATAACAGGGACACAACTGGTCGAGTGGCAAAATGGGCGATTGAACTCCTTCCTCTAGATATAAAGTTTGAGGCAAAGAAAGCTATCAAGTCCCAGGCAGTCGCGGATTTCGTCGCCGAGTGGATTGAACAGCAACTACCGACTCAGGTTCACTCGGAGCATTGGACCATGTTCTTCGACGGTTCCAAGATGCTAAATGGTTCCGGCGCCGGAGTGGTGTTGGTCTCCCCCAGAGGAGATAAACTCAGATATGTTCTTCAAATCCACTTCGATTCCTCTAACAACGAGGCAGAATACGAAGCACTTTTATATGGGTTGCGCATGGCCATTTCACTCGGCTTCCGTCGCCTCATCGTCTATGGCGACTCAAAGTTGGTGGTTAATCAAGTGATGAAGGAATGGGACGTCAGAAGTCCAGCCATGACTGGTTATTGCAATGCAGTGAGAAAACTGGAGAAGAAATT
scaffold81323	Ensembl_Plants	snoRNA	850	974	.	-	.	ID=gene:ENSRNA049475130	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=ACAAGTTCCACTCGAACAAGATCTATTCTATAGGCTCGTACCGCTACATCCTTTATCAATAAGCAGGCGAGCACATTCAGAAGATAAACCAAGTTCGAATAAATCTTAAAGTTCCAGAATGAAGA	scaffold81323	Ensembl_Plants	LTR	77	3695	15591	-	.	ID=1013257	repeat_name=LTR_EF081026.1_411	repeat_type=LTRs	sequence=GACATCCACTCGGGGACCTGTGCTCACCATGCGTCCTCTCGGACCATTGTGGCCAAAGCATACCGAGCAGGATTTTATTGGCCACGGGCAAATGAGATGGCACAAGAAATAGTCGACAAATGTGAAGGTTGCCAGTTTTACTCCAACATCTCTCACAAGCCTGCGTCAGCCCTGAAGACCATTTCACTTGTCTGGCCCTTCGCTGTTTGGGGTTTGGACATGGTGGGACCTCTGAGAACGGGTAGGAGCGGCTTCACTCATGTACTCGTGGCAGTCGACAAGTTCACCAAATGGATTGAAGCCAAACCCATCAAAAGTCTTGAAGCCAATACTGCCGTCAGTTTTATCAGAGAGTTAACATTTAGGTATGGTGTTCCGCAGAGCATCATCACTGACAATGGGTCGAACTTCGATTCTGATGAGTTCAGAGCCTTCTGCGCTTTCCAAGGCACTCGAGTCGACTATGCTTCAGTCGCCCATCCCTAGTCGAATGGACAAGCTGAAAGAGCAAACGGATTGATTCTCCAAGGACTGAAACCCCGACTGATGTGTGATCTCAAGCACGCGGCAGGCACCTGGGTCGATGAACTTCCGTCAGTGCTTTGGGGCTTGAGGACAACTCCTAATCGGTCGACTGGCCAGACTCCATTCTTCCTGGTTTATGGAGCTGAAGTTGTTCTTCCGAGTGACTTGCTTCACAATGCACCCAAAGTTGACCTTTTCTCAGAAGATGAAGCAGAACAGGCTCGACAAGACGCAATTGATCTCCTGGAAGAGGAAAGAGAGATGGCCCTGATCCTGTCGACCATTTATCAGCAAGACATGTGTCGATTCCACGCCAGAAACGTGAGGGGTCGAGCATTTCAAGAAGGAGACTTGGTTCTTCGAGTGGATCAACAAAAACCACACAAGCTCGCTCCTACTTGGGAAGGCCCCTTCATTATCACCAGAGTGCTCCACAATGGAGCATACCACTTATACAATGTCGAGCACAAGAAAGACGAGCCACACGCTTGGAATGCGGAGCTGCTCCGCCCTTTTTACACTTAAGCATTCAGACTGTTGAGATTTAATAAGAAATAGCCTTTAGTTTGATTATCAAAGACACAATTTTACAGTCTCTTAAATGATTGTTGTTCCTTTTTTATATGTTCTAAATCCCCCAGTGGGTGCCTTAGATGCGAATCCGTTTCGCCTAAGTTTGAAAATTCCTACCGAGTGGTGAGCAAGCCTCTCACTCAGAGGCTTAGTTGCGAACCCGTTTTGCCTAAGTTTGAAAAATCCTACCGAGTGGTGAGCAAGCCTCTCACTCGGGGGCTTAGCTGGAGTCCAGTACTCGCCTAAGTTTAAAAAATCCTACTGAGTGATGAGCAAGTCTCTCACTCGGGGGCTTAGCTGCAGTCCAGTACTCGCCTAAGTTTAAAAAAATCCTACCGAGTGATGAGCAAGGCTCTCCCTCGGGGGCTTAGCTGCAGTCCAGTACTCGCCTAAGTTTAAAAAAATCCTACCGAGTGATGAGCAAGGCTCTCCCTCGGGGGCTTAGCTGCAGTCCAGTACTCGCCTAAGTTTAAAAAAATCCTACCGAGTGATGAGCAAGGCTCTCCCTCGGGGGCTTAGCTGCAGTCCAGTACTCGCCTAAGTTTAAAAAAATCCTACCGAGTGATGAGCAAGGCTCTCCCTCGGGGGCTTAGCTGCAGTCCAGTACTCGCCTAAGTGTAAAAAATCCTACCGAGTGGTGAGCAAGACTCTCACTCGGGGGGCTTAGCTGCAGTCCAGTACTCGCTTAAGTTTAAAAAATCCTACCGAGTGGTGAGCAACCCTCTCACTCGGGGGCTTAGCTGCAGTCCACTACTCGCCTAAGTGTAAAAAAATCCTACCGAGTGGTGAGCAACCTTCTCACTCGGGGGCTTAACTGCAGTCCAGTACTCGTCTAAGTTTAAAAAATCCTACCGAGTGAGGAGCAAGTCACTCAATCGGAGGCTTAGCTGCAGTCCAGTACTCGCCTAAGTTCGAAAAATCCTACCGAGTGGTGAGCAACCCTCACACTCGGAGGCTTAGCTGCAGTCTAGTACTCGCCTAATTATGAAAAATCCTACTGAGTGGTGAGCAACCCTCACACTCGGAGGCTTAGCTGCAGTCCAGTACTCGCTTAAGTTTGAAAAATCCTACCGAGTGATGAGTAAGTCTCTCACCCGGGGGCTCCAGCTGCAGTCCAGTACTCGCCTAAGTATGAAAAATCCTACCGAGTGGTGAGCAACTCTCACACTCGGAGGCTTAGCCGCAGTCCAGGATTCGCCTAAGTTTAAAAAATCCTACCGAGTGGTGAGCAACCCTCACACTCGGGGGCTTAGCTGCAGTCCAGCACTCGCCTGAGTTTGAAACACACGCCAATCCGCAAGGACGATGAGGTGCAGGTCGACTGCAACCTTCTCTTCGGAGCAGCGTCACAAATACAATGTGTGCTCCATCCCCATCCGCAGGGACGATGAGGTGCAGGTCGACTGCAACCTTCTCTTCGAAGCTGCGCCACAAATACAATGTGCGCTCCATCCCCATCCGCAAGGACGATGAGGTGAAGGTCGACTGCAACCTTCTCTTCGGAGCTACGCCACAAATACAACATGCGCTCCATCCTCATCGGCAAGGACGACGAAGTGCAGGTCGACTGGGACATCCTCCTCAGAATTGCATCTCAAGTACAAAGAATATTCCGAGTGAAGAACAAGTTCCACTCGAACAAGATCTATTCTATAGGCTCGTACCGCTACATCCTTTATCAATAAGCAGGCGAGCACATTCAGAAGATAAACCAAGTTCGAATAAATCTTAAAGTTCCAGAATGAAGATAAAAGTACTCGGGCATCAGGCCCGAAGGAGTTTAACGGTTACAAAATCACTCGGCATTCCGAGGCAAATTTAAGGTTAGGTATATAGTTTGTTCACTCCGCAGGAGGAGGGCTTGCCGGCTCGACGAACTCGTCCAGGTCAATTCCGTCAGCGATCCGAGTGGCCGCAGCAATGAAGGTTTCCATGAAGGATTGGAAGTCATGCCTTTTGTATTGGCAACCTTGATCGCCGCCAGCTTCTCTTCTCAAGCTTCTTTGCAGTGGACCCTAACAAGGGACAGAGCCACATCAGCACTGCATCGGGCAGATGACTTCTTCCATTCCTGCACTCGACTAGGAACCTCATTGAGTCAAGTCATCAAAGACTCGAGGTCATTTTGAAACGTTGCCCTTGGCCAGAGTGATGTATCAATGCGCGACACCGCCACCTTCAGGCGAGCAAGATAGCTTGTAACGTTGGCAACATGAGATTCCAGTCGGAGCATGTTCATGGGAGCCTCATCGCCGACTGGAGAAAGGATAGGGTCCAAGCCTGTCTCGATCTATCCGGTTTCCTCTTCAATTTTTTTGTAGAATTCTGCAGATTCAAGGAGTTAATGAGTTGACTGGTTCATGATGACTTGCAAACAGTGAATCAGTCGGATAAACAGAAGTACCTTCGAGCATAAGGAATAGCTTCTGGCGAGTGCTTTCAGATAAGCCTCCAGGTCATTTCTCCGACGAGACATGCTTTCCAGTCGCTCGTTCAGAGTCACCTTATCCTTCTTCAGGC
scaffold58968	Ensembl_Plants	snoRNA	61105	61199	.	-	.	ID=gene:ENSRNA049474459	Name=snoZ103	biotype=snoRNA	description=Small nucleolar RNA Z103	sequence=GTGGACATGATAATCCTTACCCCAGATGATCGACAATGAACATGCTGAGCGCTATATTTTCTCTTAGGAGAAACCAAGCCAAGGCTCTGATCTGC	scaffold58968	Ensembl_Plants	LTR/Copia	61000	61120	309	+	.	ID=1345290	repeat_name=trep1401	repeat_type=LTRs	sequence=AAATAATATAAAAGTAGATAATAAAGCCCAATAATGTCCAAAATAGTAGATAATATAGCATGGAGCAATCAAAAATTATAGATATGTCTGAGACGTATCACTTGGCAGATCAGAGCCTTG
scaffold85814	Ensembl_Plants	snoRNA	4334	4418	.	+	.	ID=gene:ENSRNA049482829	Name=SNORD36	biotype=snoRNA	description=Small nucleolar RNA SNORD36	sequence=GGGCAGAGGATGTGAAACATTTAGACCGTTGAGGCCTTTCCAGTCTTTGATGATCTAAAATTGAGCTTTTTAAAACTGATGCCTA	scaffold85814	Ensembl_Plants	DNA/En-Spm	4318	4624	1268	-	.	ID=2239822	repeat_name=trep4066	repeat_type=Type II Transposons	sequence=CTAATATACTAGAACTAGATCAACCAAGCATCAGTTTTAAAAAGCTCGGTTTAAGATACTTCAACGGCGTAAAATCTCAGTAGCATCTCCTTGTAACATCATATGCTCAGCTGACAAACGAGTCACATGCAACTCCTCTACATTATATCACACCAACACACAGAGCTGCATTCTAGATGAGGAACAAAAAAACGTTGATGGCATGCTAGGCATCAGTTTTAAAAAGCTCAATTTTAGATCATCAAAGACTGGAAAGGCCTCAACGGTCTAAATGTTTCACATCCTCTGCCCAGCACAACATCATCA
scaffold85814	Ensembl_Plants	snoRNA	4517	4600	.	+	.	ID=gene:ENSRNA049482826	Name=SNORD36	biotype=snoRNA	description=Small nucleolar RNA SNORD36	sequence=GAGCATATGATGTTACAAGGAGATGCTACTGAGATTTTACGCCGTTGAAGTATCTTAAACCGAGCTTTTTAAAACTGATGCTTG	scaffold85814	Ensembl_Plants	DNA/En-Spm	4318	4624	1268	-	.	ID=2239822	repeat_name=trep4066	repeat_type=Type II Transposons	sequence=CTAATATACTAGAACTAGATCAACCAAGCATCAGTTTTAAAAAGCTCGGTTTAAGATACTTCAACGGCGTAAAATCTCAGTAGCATCTCCTTGTAACATCATATGCTCAGCTGACAAACGAGTCACATGCAACTCCTCTACATTATATCACACCAACACACAGAGCTGCATTCTAGATGAGGAACAAAAAAACGTTGATGGCATGCTAGGCATCAGTTTTAAAAAGCTCAATTTTAGATCATCAAAGACTGGAAAGGCCTCAACGGTCTAAATGTTTCACATCCTCTGCCCAGCACAACATCATCA
scaffold171052	Ensembl_Plants	snoRNA	617	700	.	-	.	ID=gene:ENSRNA049467665	Name=SNORD36	biotype=snoRNA	description=Small nucleolar RNA SNORD36	sequence=GAGCATATGATGTTACAAGGAGATGCTACTGAGATTTTACGCCGTTGAAGTATCTTAAACCGAGCTTTTTAAAACTGATGCTTG	scaffold171052	Ensembl_Plants	DNA/En-Spm	593	897	1203	+	.	ID=2239834	repeat_name=trep4066	repeat_type=Type II Transposons	sequence=TAATATACTAGAACTAGATCAACCAAGCATCAGTTTTAAAAAGCTCGGTTTAAGATACTTCAACGGCGTAAAATCTCAGTAGCATCTCCTTGTAACATCATATGCTCAGCTGACAAATGAGTCACATGCAACTCCTCTAAATTATATCACACCAACACAGAGCTGCATTCTAGATGAGGAACAAAAAAACGTTGATGGCATGCTAGGCATCAGTTTTAAAAGGCTCAATTTTAGATCATCAAAGACCGGAAAGGCCTCGGCGGTCTAAATGTTTCACATCCTCTGCCCAGCACAACATCATCAT
scaffold171052	Ensembl_Plants	snoRNA	797	881	.	-	.	ID=gene:ENSRNA049467652	Name=SNORD36	biotype=snoRNA	description=Small nucleolar RNA SNORD36	sequence=GGGCAGAGGATGTGAAACATTTAGACCGCCGAGGCCTTTCCGGTCTTTGATGATCTAAAATTGAGCCTTTTAAAACTGATGCCTA	scaffold171052	Ensembl_Plants	DNA/En-Spm	593	897	1203	+	.	ID=2239834	repeat_name=trep4066	repeat_type=Type II Transposons	sequence=TAATATACTAGAACTAGATCAACCAAGCATCAGTTTTAAAAAGCTCGGTTTAAGATACTTCAACGGCGTAAAATCTCAGTAGCATCTCCTTGTAACATCATATGCTCAGCTGACAAATGAGTCACATGCAACTCCTCTAAATTATATCACACCAACACAGAGCTGCATTCTAGATGAGGAACAAAAAAACGTTGATGGCATGCTAGGCATCAGTTTTAAAAGGCTCAATTTTAGATCATCAAAGACCGGAAAGGCCTCGGCGGTCTAAATGTTTCACATCCTCTGCCCAGCACAACATCATCAT
scaffold2064	Ensembl_Plants	snoRNA	6612	6715	.	-	.	ID=gene:ENSRNA049467499	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=ATGACCTTACTTGAACAGGATCTGTTCTATAGGCTCGTACCGCTGCGCCACTCGAACTATTCAGACCCCGGCCAACTCTCAGCAGTCGACCGTGGTCTCGGGGA	scaffold2064	Ensembl_Plants	LTR	5951	6661	5388	+	.	ID=389227	repeat_name=LTR_EF081030.1_418	repeat_type=LTRs	sequence=ACACCAACTGCCCGGCAATCTGAAGACGCAGGCGGGGCCTCAGTAACTTTCGCTGTACCATTGTCGAGTGAGCGCCTTGCACCGTCGATTGTACCGGTGTTCCCTTCAGTCATCCAACCTCCCGCTTCGGAGCTCCAAGCTGCCGCACCTGGGTCGTCTGCCCCCTTCTTCACCAACTACCATGTTCCGGAAAACCAATCGGAAACGGCTGCGGAAGCCATCCGTCAGGCTAACGTGATGATGGAGCGGATGAAGACGGTGCACAAGAATAGCCAGGCTGCTTACGACACTAGCGCTGCTCTCCGGGCCAATGTCCAGGTGAGTAAACTTTCGACTGACCTTGTTCTATTAGGATATGCTACCCGAAATATTTTCTGTCATACAATCTCTTATTGTTTGCGTCAAATCTGTACACCCACTAGGTGTTTTGTTGTCTTTGGCATTCGCGCTCTTCCACTCGGCCTGGGCGAGTGGGATCTGAACCGGTGGGGGCACGCTAAGTGCACCCACTGGGTGTAGTCCCCGAGACCACAGTCGACTTCGGGCAGTCGACTGGGGTCTGAGTTCTTTTTTCTTTCTTTTCTTCCACTTGACCCGGGCGGACCGGTCGAATGAGATCTAAACCAGTGGGGGCACGTCAAGTGCACCCACTTGGTGTAGTCCCCGAGACCACGGTCGACTGCTGAGAGTTGGCCGGGGTCTGAATAGTT
Pt	Ensembl_Plants	antisense_RNA	10126	10312	.	-	.	ID=gene:ENSRNA049476262	Name=IsrR	biotype=antisense_RNA	description=Antisense RNA which regulates isiA expression	sequence=AATAACCAAATATAACACTGGGACTAAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCA	Pt	Ensembl_Plants	LTR	9987	10554	3401	-	.	ID=2236241	repeat_name=LTR_Gr_chr_04_953	repeat_type=LTRs	sequence=ATTGAACCATACAAAACAACAAGCGATAAAACCAAAGACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAATGCACGGCGAGCCCATGCGAAGGGTTTGGTTAAAATATGCCAAATTCCGCCAAATACACAAATAAAACCCAACCATACATGCCCACCAATTATATCTTCTAAATCATCTACACTAACAATCCACCCTTCTCCACCAAAAGGAGATTTTAGTAAATAACCAAATATAACACTGGGACTAAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCAGACATAACCAAAGAATGGAAAAGATTCCTCAAGAGTCTCGGGTCCCAGAAGCGCGTGATAAATGCCACCGAAGCCTAAGACTGCGGAGGAAATTAGGTGAAGTACGCCAGATACAAAGTACGGAAAAGTATCTAGAAC
scaffold129696	Ensembl_Plants	antisense_RNA	469	654	.	-	.	ID=gene:ENSRNA049481785	Name=IsrR	biotype=antisense_RNA	description=Antisense RNA which regulates isiA expression	sequence=AATAACCAAATATAACACTGGGACTTAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCAGGGGCACAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCA	scaffold129696	Ensembl_Plants	LTR	330	896	3181	-	.	ID=2236243	repeat_name=LTR_Gr_chr_04_953	repeat_type=LTRs	sequence=ATTGAACCATACAAAACAACAAGCGATAAAACCAAAGACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAATGCACGGCGAGCCCATGCGAAGGGTTTGGTTAAAATATGCCAAATTCCGCCAAATACACAAATAAAACCCAACCATACATGCCCACCAATTATATCTTCTAAATCATCTACACTAACAATCCACCCTTCTCCACCAAAAGGAGATTTTAGTAAATAACCAAATATAACACTGGGACTTAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCAGGGGCACAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCAGACATAACCAAAGAATGGAAAAGATTCCTCAAGAGTCTCGGGTCCCAGAAGCGCGTGATAACTGCCACCAAAGCCTAAGACTACGGAGGAAATTAGGTGAAGTACGCCAGATACAAAGTACGGAAAAGTATCTAGAAC
scaffold262405	Ensembl_Plants	antisense_RNA	31460	31646	.	+	.	ID=gene:ENSRNA049470420	Name=IsrR	biotype=antisense_RNA	description=Antisense RNA which regulates isiA expression	sequence=AATAACCAAATATAACACTTGGGCTAAGAGTCAGGTTGGTAATTTTTCTTACGTCCCCCCCCCCTGGAGCCCAGGTATCATATATGCCCCCAAAATAAAGAGCCTTGAATACTAGAAGGAAAGCACCTATACCTAACAAGATTAAGTGAATACCCAAAATTGTTGTCATTTTATTTCTATCTTTCCA	scaffold262405	Ensembl_Plants	LTR	31218	31779	3835	+	.	ID=2236242	repeat_name=LTR_Gr_chr_04_953	repeat_type=LTRs	sequence=TTGAACCAGACAAAACAACAAGCAATGAAACCAAAAACAGCTAAAGCCCCTAAACTATAAGACAAGTAAGCTTCTCCAGACCAGACAAGTGCACGGCGAGCCCATGCAAAAGGTTTAGTTAAGATATGCCAGATTCCGCCAAGTATACAAATGGAACCTAACCATACATGCCCTCCTATTATATCTTCCAAATCATCTACACTAACAATCCACCCTTCTCCTCCAAACGGGGATTTTAGTAAATAACCAAATATAACACTTGGGCTAAGAGTCAGGTTGGTAATTTTTCTTACGTCCCCCCCCCCTGGAGCCCAGGTATCATATATGCCCCCAAAATAAAGAGCCTTGAATACTAGAAGGAAAGCACCTATACCTAACAAGATTAAGTGAATACCCAAAATTGTTGTCATTTTATTTCTATCTTTCCATACATAACCAAAGAATGGAAAAGATTCTTCAAGAGTCTCAGGGCCCAGAAGTGCATGATAAATACCGCCAAAGCCCAATACTGCCGAGGAAATTAAGTGAAGTACTCCAGATACAAAGTATGGAAAGGTGTCT
scaffold181218	Ensembl_Plants	sense_intronic	10411	10481	.	+	.	ID=gene:ENSRNA049479480	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=TTGAGCCGTACGAGATGAAATTTTCATATACGGCTCTTAGAGGGGGACTCGGGTTAGTTACCTATCTCAAT	scaffold181218	Ensembl_Plants	LTR	10402	10470	382	-	.	ID=2225247	repeat_name=LTR_Os_chr_11_2029	repeat_type=LTRs	sequence=TAACTAACCCGAGTCCCCCTCTAAGAGCCGTATATGAAAATTTCATCTCGTACGGCTCAAGCAGAAAC
scaffold181218	Ensembl_Plants	sense_intronic	16535	16613	.	-	.	ID=gene:ENSRNA049479475	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTTTGCAGTAGAGATGGAACTAAGAAAGAGAACCATCGACTATAAC	scaffold181218	Ensembl_Plants	LTR/Copia	16592	16641	239	-	.	ID=2243401	repeat_name=LTR_Gm_16_5235	repeat_type=LTRs	sequence=ATTTACATGCTTTCTGATTCCATTCGCGAGGAGCTGGATGAGAAGAAAC
scaffold181218	Ensembl_Plants	sense_intronic	6306	6384	.	-	.	ID=gene:ENSRNA049479460	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	scaffold181218	Ensembl_Plants	LTR	4818	8455	26188	+	.	ID=2080249	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTCGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGAAAGAGAATTTGATAAGGCAATG
scaffold11598	Ensembl_Plants	sense_intronic	74306	74577	.	+	.	ID=gene:ENSRNA049478740	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=CTACAGACTTGATTGTATTGAGCCTTGGTATGGAAACCAGCTAAGTGGTAACTTCCAAATTCAGGGAAACCCTGGAATTAAAAAAGGGAAATCCTGAGCCAAAACCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGTTGTTCTAATGAATCGAGTTAATTACATTGTGTTGTTAGTAAGCCCCCGAGTGGGAGGATTGCGCTCCACTCGGTAGGATTTTTTAAACTTAG	scaffold11598	Ensembl_Plants	LTR/Gypsy	74464	74978	722	-	.	ID=1406148	repeat_name=RLG_Jeli_3B_011_O13-1	repeat_type=LTRs	sequence=TCCCACTCGGGAGCTTAGTTGCAGTCCCGTACTCGCCTAAGTTTAAAAAATCATACCGAATCGAGAGCAATCCTCCCACTCGGGGGCTTAGCTGTAGTCTCATACTCGCCTAAGTTTAAAAAAATCCTACCGAGTGGAGATCAATCCTCCCACTCGGGAGCTTAGCTGTAGTCCCATACTCGCCTAAGTTTAAAAATCCTACCGAATGGAGAGCAATCCTCCCACTCAGGGGCTTAGCTGCAGTGTCGTACTTTCCTAAGTTTAAAAAATCCTACCGAATGGAGAGCAATCCTCCCACTCGGGGGCTTAGCTGCAGTCTCGTACTCGCCTAAGTTTAAAAAATCCTACCGAGTGAAGGGTAATCCTTCCACTCGGGGGCTTAGCTGCAGTCCCATACTCGCCTAAGTTTAAAAAATCCTACCGAGTGGAGCGCAATCCTCCCACTCGGGGGCTTACTAACAACACAATGTAATTAACTCGATTCATTAGAACAACTTCCATTGAGTCTCTGCAC
scaffold11598	Ensembl_Plants	sense_intronic	74306	74577	.	+	.	ID=gene:ENSRNA049478740	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=CTACAGACTTGATTGTATTGAGCCTTGGTATGGAAACCAGCTAAGTGGTAACTTCCAAATTCAGGGAAACCCTGGAATTAAAAAAGGGAAATCCTGAGCCAAAACCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGTTGTTCTAATGAATCGAGTTAATTACATTGTGTTGTTAGTAAGCCCCCGAGTGGGAGGATTGCGCTCCACTCGGTAGGATTTTTTAAACTTAG	scaffold11598	Ensembl_Plants	LTR	74524	82238	43462	-	.	ID=677923	repeat_name=LTR_AC200833.1_85	repeat_type=LTRs	sequence=TGACGATGACATGTACCTAAGGTAGGATAATAGACCTGATCTAAGCATCCCTCCAAAGGACACCGCCCTACAGTCAAAGACATTTAAAGGATAGAAAATTCTACCGACTGAAGTCACCTCAAGGTACAACTCACTCGACCATGGTTCCACTCGGATAACCCAATTCTAGTCGACCAAGATATAATCATTCGAGCACATCAGAAACCACTCGGATTACAGAAGATCTAAGGTCACTTTGGATGGCAACGTCAAGCGTTCACTCCGTAGTCTTAAGGGCCATTTATATCACTTTAATGCTAACGTTGCCAGTAACGTCCCCTCTTTATGTACATTGAACTCCTTGTAACGTGGGTTGGCCGCGGTCCTGGCGCACTCTATATAAGCCACCCCCTCCACTGAGACAAGGCTTCGCACCCCCTGTTACTTCATGCATAATCCAATCGACCAGCCTCCGGGCACCGAGACGTAGGGCTCTTACTTCCTCTGAGAAGGTCCTGAACTCGTAAATCTTGCGTGCACAACTTCACCGTAGCTAGGATCTTGCCTCCTCATACCTACTCCCATTCTACTGTCAGACTTAGAACCACGATAGTTGGCGCCCACCGTGGGGCAAGTGTCTTTGCGACTTTCCGGTGAGGTTGCGATTTCTCCGAATCCTTTCATCATGGTTTTCGGCAGAGGTTTGGCTAAGGGCCGCGAGATCTGTCTCGGCGCACTTGTTTTCATCGCCGACGACTCTGCTTGGCTCCAGGAAGCTCCCCTTGACGTCAAGGCACTCCCCATCCGTGGGGCGATGCACGTTCGCGCGTGCGTTCGCCGCGTCCTTCTGCGGCAGTCGTCGACCCAGTATCTATCGGCTCCCGCGGTGTCTTCGCTCCCCGCTGTTCGCCGTCACAAAAAGTCCGGTCGGTCATGGCTTCATTGGTGGGTGAAGCATGCGGTGGCACGTCAGTCGGCCACCCCTCAAGTCACAGCAATCAAGCCCGGCGAATCTCTCTACGGCCTGTTCGATCTGTCGACCGGCTCCATCAAGACCCTATCTGAGTGTGGCAGCAGTGACCCCGCAACTGAGGTCCTGATGGCCGACACGCCATGCAGCCCTCCTGGACTGCGTCACAACGACAGAGACGACGGCGGCGGTGATCCGTCGCGCGTTCACGAGGAGTACCACCCCGAAACCCTTTCTTCTCAGCAGAGGGAGGAACTTCAATGCCGTAATATGGAGGCGCTCCACACGCCCGTTGTCGGAGAGACCTCTGAGGCTTGGGCCTTAGAGGCAATGCGCTTGGCTACTTTGGCTGAGCGCACTCGACTGGAGAACCTTCAGTGTGCACTCTACGAGCGTGCTCGGCGGCAGATCCCCGAATCCAGTCAGCGGTAGCTGTTCCTGCCTGAACCACAGGTATACTGTACTCCGATTCAAAACCTTACAGCCGCAGCCCACATAGAAGAATCTATTCAATCGTCCCAGTCGGAAGCTGGTAGAGGTTTGATGTAGATCAGAGTGCTGCTCCGAGCAACAGGAGAGCAGAACACTGTAGTGTCTCAGTCGCGTAACGGAATTCATAGCAGATCTATGGTAGCTGACATAGTTCAGTCGGCTCACAGCCCAAGATCGCCTCCACGGCGTGAGGGATGAGGGCATGACCAAGGGCGGTACTTGGGTCAGAACCACGAGCAACACGATCATCAGCTCGACCGTGATGACTGCCGTCGAGTGCCTACGCCCCCTCCGAGCGGCGAATCATATGTGCCTCGGCATTATGATGATAGGCACCCGTACAACAAAGAGCAGAGGAGGCTAGTTGACCCAAGAGAACCAGCGTTTGATGCAAGGTCAATTCTGGTGCAAGGTTTGGTGGACAGGAATCGAGCACACAGAGAAGGGCAAGCCAGAGATCGCCCGACTGGAAGCAGAGTGCATGTTTCTGGTCCTGAGTGTTTTAGCAAAGCCATCAGGGCCGTAGAGATCCCTCCCAACTTCAGGTTGGTGACTGGAGTCAGTAAGTTCACTGGTGAATCGAATCCTGACACCTGGCTTGAGGACTACCGAGTGGATGTGCAGATCGGTGGAGGAAACGATGAGGTGGCCATGAAGCACCTTCCCCTAATGCTTGAAGGGTCAGCTAGAGCTTGGTTGAATCAGTTGGCTCCGGGCAGTATATTCATCTGGGAGGAGTTGTACTGAGTGTTCGTTAGAACGTTTGAGGGCACGTGCAAACGACCAGCAGGATTGACAAAATTGCAACATTGCATGCAAAAACCGAATGAAACTTTGAGGGATTATATCCAGAGGTGGACCACTTTGCATCACACTGTGGAGAATGTGTCTCAGCATCAAGCAGTTTGTGCCTTCAAGGAGGGCGTTCTGTATCAGGAGCTCAACCTGAAATTCGGTCAGACAGGATACATGACCCTGACCCGAATGATGGAGATAGCCACTCGGTACACAAACGGCGAAGAAGAAGACCGACTCCGCAGCGGCAAGGGCAAACCAGTTGGCTAGGACACTGGAGGAGGTAATTCCAATCAGAAGCAAAAGTGCAAAGCAGAACCTGCAGGTCCTGGAGAAGTTGTAGTCGCAGCCCAAGGAAAATCTAGAGGAAAGCCTAAAGGGCCCTAGACCCCCAAGATGGTGAAGGCTTCAACAGGGAATGACGTGTTGGATCTGCCATATCACATTCACATCAAGAAAGATGAAGAGGGTAATCTGATTTATCACAAACATACCACTCGACAGTGCCGATTCCTTATATAGCAGTTCCGAGAAAAGCAACCCAGTGAGAAAGAGAAGGAATCTGACAAGGATGCGGAGAAGAAAGAGGATGATGAAGGATTTCCCAATGTCAATTCCACTTTGGTGATTTTTCCTGACATTGAAAGTAAAAGTCGACTGAAAGTGATCAACAGAGAAGTAAACATGGTTGCTCCGACAATGACCACGTATCTGAAGTGGTCGAAGACTCCCATCACATTCGACCAGTCGGACCACCCGCCGCACGTAGCCATGCCTGGGAGGCAAGCATTGGTGGTCAACCCGGTTGTTGGGGGCACCCGATTGACCATAGTCTTGATGGATGGCGGCAATGGTTTCAACATTTTGTATGCTGAGACCCTCCGAGGGATGGGCATTCCGATGTCCAAGCTCAGCGAGAACAACATGCGGTTCCACGGAGTTATACCTGGAAACAAAGCTAATTCACTCGGCCAGATCACTCTTGACGTGGTTTCGGTGATTCAAAGAATTACCGTAAGGAAAAGTTGACATTTGAAGTTGTCGATTTTCATAGTGCCTATCATGCTATCCTGGGCAAAACTACGTATGCTCGTTTCATGGCTCGACCATGTCACGTGTACCTCAAACTCAAGATGCCTCGCCCTAGGGGTGTGATTACAGTCACTGGTAATCAGAAGCAGGAAGATGAGTGCTTCCAAAAGGGCTCGAAGATTGCCGATGAACAGATGGCAGCAATAGAAATGGAAGAATACAAGAAGACTGCAGATCCGAGTGATTTGTTGAGAGCTAAAAAGCCTGCTTCAGGATCTACATTTAAGTCGTCTGGTGAAATAAAGTTAGTTCATATTCACCCGACTGATTCCAATGCTGCTCCGACTCATATTTCAACAACACTCGACAGCAAATAGGAAGAAGCGCTCATCCACTTCCTCCGTGGGAACTGGAACATCTTTGCATGGAAACCTTCTAATATGCCAGGTGTACCTAGGGAATTGGCTGAGCACCATTTGTGATTCGACCCAAAAGAAAAACATGTCAAAGAGCATCTCCGATGGTCCGCCGTGGAGAAAAGAAAGGCAATTGGCGAGGAAGTGGCTCCGCTTCTGGCAGCTGAGTTCATCCCACAGATTTACCACTCCGAGTGCCTCGCCAATGTCGTCATGGTTCCTAAGAAAGATGATTCACTCCATATGCGCATTGACTTCAAGCATATCAATCGGGCCTGCCTGAAAGATCACCTCCCTCTCCCCCGCATCGATCAAATAGTCGACTCGACTGCGGGATGTGAGTGATTGTCCTTTCTGGACGCATACTCCGGGTACCATCAGATCCGACTGTATGGACCCGATGAAATAAAAATAGCTTTTATCACCCCATTTGGGTGCTTTTGCTATGTTACCATGCCGTTTGGTCTCAAGAATGCTGGCGCCACATTCATGCGCATGATATAGAAGTGCCTGCTCAATCAAATCAGTCGGAATGTGGAAGCATACATGCATGACATCGTGGTTAAGTCGCATAAAGGTTCCGACCTACTGACCGACCTCGCTGAAACCTTTGCCAACCTGACAAGATATGATATCAAGCTTAACCCGTCGAAGTGTACATTCGGAGTTCCAGGTGGAAAGTTACTCGAATTCCTCGTTTCCGAACATGGGATCGATGCTAACCAAGAGAAAGTTGGTGCAATACTCCGAATGAAAAGCCATGTGCGCATACACGACGTTCAGAAGCTTGCTAGTTGTTTGGCCGCCTTGAGTCAATTCATCTCTCATCTCAGTGAAAAGGCATTGCCTCTTTACCGATTGATGAAAATATCTGATAAGTTTGAGTGGACTCCTGAAGCTGACGCAGCGTTTGCAGAGCTCAAAACCCTGCTTTCCACCCAGCCGGTGCTCGCTGCTCCAATCAGCAAAGAGCCTTTACTGCTTTACATTGCAGCAACTGGACAAGTTGTCAGTACAGTACTCATGGTCGAGCGGGAAGAAGAAGGTAAAGCCTATAAGGTTCAACACCAAGTGTACTATATTTCTGAAGTCTTAACTCCATCCAAGCAGAGATATCCGTGTTATCAGAAGCTTGTCTATGGAATTTACTTGACCACGAAGAAGGTTGGACATTATTTCTCAGATCACTCTGTCACAGTCATTAGCGATGCTCCATTCTCAGAAATTCTGAACAAAAGAGATGCAACTGGTCGAGTGGCAAAGTGGGCGATTGAACTCCTTCCATTGAATATCAAGTTTGAGGCAAAGAAAGCAATCAAGTCCCAAGAAATAGCAGATTTCCTCGTCGAGTGGATCGAGCAACAACAACTGACTCAAGTCCAGTCGGAACATTGGACTATGTTCTTTGATGGATCCGAGATGTTGAATGGTTATGGCGTTGGAGTAGTCCTGATATCCCTATGAGGCGACAAACTCAGTTATGTCCTTCAGATTCACTTTGATTCCTCCAACAATGAAGCTGAGTACGAAGAACTTCTGTATGGGCTGCGAATGGACATTTCACTCGGTGTCCGTCGCCTAATGGTCTACGGGGACTCAGATTTGGTGGTCAACCAAGTGATGAAGGAGTGGTACGTCAGAAGCCCAGCTATGACTGGTTATTGCAATTAAGTGAGAAAGTTAGAAAAGAAGTTTGAAGGGCTACAGCTCCACCACATTCCCCGACTGAAGAACCAGGCAGCAGACGACCTGGAAAAAATAGGTTCCAAGCGGGAGCCCATTCCCAGCAATGTGTTCTTAGAGCATCTTCCACACCATCAGTTCAACAGGATCTCTTCACAGAAGAGTCCCCACAACCTAAGAGTTCTACTGATCCGACTGAAGTTGAAATCCCAGCCGTGGTCGACCTAATCATGGAAGTTTTGGTCGTCATTCCTGACTAGACAGTGCCGTATATCACATATATTCTCAGGAAAGAACTTCCAGAAGACGAAGATTAAGCATGACAGATTGTCTGTCGATCCAAAGCCTTCACTATGATAAGTGGTCTACTGTACAGGCAGAGTGTGACTGGGGTTGCCCAGCGATGCATTACCCCAAAGGAGGGTCGAATGATTCTTAATGATATCCACTCGGGGACCTGTGGTCACCATGCGTCCTCTCGGAAAATCGTGGCCAAAGCATACCGAGCAGGTTTTTACTGGCCATGAGCAAATGAAATGGCAAAGGAAATAGTTGACAAGTGTGAGGGATGCCAGTTCTACTCCAACATGTCTCACAAGCCCGCTTCAGCCTTGAAGACCATTCCACTCGTCCGACCATTTGCTGTTTGGGGGCTGGATATGGTTGGACCCTTGAGGACTGGCAGAAGTGGTTTCACCCACCTGCTTGTTGCAGTCGACAAGTTCACTAAATGGATTGAAGACAAACCCATCAAGAACCTCGATTCGAGAACCGCCACCGGTTTCATCAGACAGTTAACATTCAGATATGGAGTCCCACATAGCATCATCACAGAAAATGGTTCAAACTTTGATTCAGATGAGCTCAGAGCTTTCTGTGCTTCCTAGCACACCTGGGTCAACTACACTTCAGTCGCTCACCCTCAGTCGAATGGACAAGCAGAAAGAGCAAATGGTTTGATCTTACAAGAGTTGAAGCCCAGATTGATGCGAGACCTCAAGCATGCGACTGGTGCCTGGGTAGATGAGTTACTATCAGTACTGTGGGGTCTGAGAACAACGCCAAATCGTTCGACTGGCCAGACTCCTTTCTTCATGGTTTATGGAGGCGAAGTCGTGCTACCGACTAATTTACACCATAATGCCCTGTGAGTGGAGCTCTTCTCAGAGGCAAAAGCGGAACAAGCCCGGCAAGATGCTATTGATCTTTTGGAAAAAGAAAGAGAGATGTCCCTGATCAGATCGACCATTTATAAACAAGACCTTAGTCGGTTCCATGCTAGGAACGTAACAGGTCGAGCATTTCAGTAAGGGGACCTAGTTCTCCGAGTGGATCTGCAACATCCACACAAGCTTGCTCCCGCCTGGGAAGGTCCCTTCAGCATCACCAAAGTGCTCCACAACGGAGCATACCACATGCATGTTGTGGAACAAAAGAAAGACGAGCCACGCGCTTGGAATGCGGAGCTTCTCCGCCATTTTACACTTAAGCATTCAGACTATCGCGATGTAATAAGAAGTACCTTTAAGTTTATTTATCAAAGATATGGCTTTTCAGTCTCCTAAATGATTGTTATTACTTATACATGTGTTCAAAATCCCCCAGTGGGTAGCTTAGCCACGAATCTGATTCGCCTAAGTTTCAAAAACATAATCCTACCAAGTGAAGAGCAAGCCTCTCACTCGGGGGCTTAGCTGCGAATCCGATTCGCCTAAGATTAAAAAATCCTACTGAGTGGAGGGCAATCCTCCCACTCAGGGGATTAGCTGTGAATCCGGTTCACCTAATATTAAAAAATCCTACCGAGTGGAGGGCAATCCTCCCACTCGGGGGCTTAGCTGCAGTTCCGTACTAGCCTAAGTTTTAAAAATCCTACTGAGTGGAGGGCAATCCTCCCACTCGGGAGCTTAGTTGCAGTCCCGTACTCGCCTAAGTTTAAAAAATCATACCGAATCGAGAGCAATCCTCCCACTCGGGGGCTTAGCTGTAGTCTCATACTCGCCTAAGTTTAAAAAAATCCTACCGAGTGGAGATCAATCCTCCCACTCGGGAGCTTAGCTGTAGTCCCATACTCGCCTAAGTTTAAAAATCCTACCGAATGGAGAGCAATCCTCCCACTCAGGGGCTTAGCTGCAGTGTCGTACTTTCCTAAGTTTAAAAAATCCTACCGAATGGAGAGCAATCCTCCCACTCGGGGGCTTAGCTGCAGTCTCGTACTCGCCTAAGTTTAAAAAATCCTACCGAGTGAAGGGTAATCCTTCCACTCGGGGGCTTAGCTGCAGTCCCATACTCGCCTAAGTTTAAAAAATCCTACCGAGTGGAGCGCAATCCTCCCACTCGGGGGCTT
scaffold37941	Ensembl_Plants	sense_intronic	89282	89360	.	-	.	ID=gene:ENSRNA049478736	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCACTTTTCAACTCTGAC	scaffold37941	Ensembl_Plants	LTR	88124	89901	11304	+	.	ID=2080201	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TTTTGATATCAAAATAAAATAGATGAAACATGTACAATCCAATTTCTCAATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATATGATAGATATGTCAAAAGGAGGTCTGATTACACCTATTCCTAATCCTAAATAGCATGCAAGGACGTAGGGATTTCTATGTAAACAGATTATCCTATTTCCATAGGCTCGAATGACCTCTTCTCATAATAAGAATGTGCACAGTCTGGTTCGGTATGGAATGAACTTTTAATCTGATGATCGAGCTGATTCCATGATTATAAGTTCATAACCCTAGCGGCCATTCCCATTTTGGGCAGAACATATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTACCCTGAGCAAGTGCAAGAATGGGGTTCATTGATATTCTTAGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGAACATAAGGGCTTATTTCTTGGTTTCGTCGAGTCATTAATAACCTGATTATTTTTAGATAATAGTAGATAGAAAGAATGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTACTTTCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAGTCTGCTAGTGGGGGAAGGCCTCCTAGGGATAAGAGACATATGGCTAAAGAGAGAACCAAAAAAGGATATTTCGTGTATAATCCTGCATAATCTTCAATGTTATCAGTTCCGGTACATAGACGACATAATACAATGAAAGCAAAAGTTCTGAGATTCATGGAGATATAGAACAACATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCTGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAACAAGGAGATTCCGCAAAGTCATGCTAAGAATAGCTAGGATTTCCAGAATAAGATGCCATTCATTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAGAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTTGAAAAGTGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAATAGAAAGAAGGACTCGTCTTGTCTCTTTTTTGATTACCTTCCTCGCTTATGTATAGGATCGAATCCATTCTTTTTCGAAATCGATTTCGATAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCTAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCCTTTGTCAACGGATGCTCGTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCTATAATTCAAGCATTGTATTCGTCATTAGTCCAATTATTTGTAGGAACTACCAGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAAAAAAATACCACAATAAACTTTTGGTAGAAGTTCTATCTTGGTCGGAGTGGGAATA
Pt	Ensembl_Plants	sense_intronic	33767	33850	.	+	.	ID=gene:ENSRNA049476244	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	Pt	Ensembl_Plants	LTR	32244	41480	75676	-	.	ID=2079984	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TCAAAATATATATCTTTCAAAGATTCACTAAAAAGACAGTTGGCGGGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTTAATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTGTTGTGGATAGGGATCCTGTAAAAACATCTTTTGAGGAATGGGCCAGACCCGGCCATTTCTCAAGAACACTAGCTAAGGGCCCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGTCATACTGGTGATTTGGAGGAGATTTCTCGAAAAGTCTTTAGTGCTCATTTCGGGCAACTTTCCATTATCTTTCTTTGGTTGAGTGGCATGTACTTTCATGGCGCCCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTCACATTGGACCCAGTGCTCAGGTAGTTTGGCCTATAGTAGGGCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATCCAAATAACCTCTGGTTTTTTTCAGCTTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTCTATTGTACTGCAATTGGTGCATTGATTTTTGCAGCGTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCCGCTCCCAAATTGGCCTGGTTCCAAGATGTAGAATCCATGTTGAATCACCACTTAGCGGGATTATTAGGACTTGGGTCTCTTTCTTGGGCGGGGCACCAAATTCATGTATCTTTACCAATTAACCAATTTCTTGACGCTGGGGTGGATCCTAAAGAGATACCACTTCCTCATGAATTTATCTTGAATCGGGACCTTTTGGCTCAACTTTATCCTAGTTTTGCCGAAGGAGCAACCCCTTTTTTCACTTTAAATTGGTCCAAATACGCAGAATTTCTGACTTTTCGCGGAGGACTAGATCCAGTAACCGGTGGTCTCTGGCTGACCGATATTGCGCACCATCATTTAGCTATTGCTATTCTTTTCCTAATCGCAGGTCATATGTATAGGACCAATTGGGGTATTGGCCATGGACTTAAAGATATTTTGGAGGCTCACAAGGGCCCATTTACAGGACAAGGCCATAAGGGTCTTTATGAAATCTTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTATTCTATGCCTCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTCGGTGCTGCTGCACATGCAGCAATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGCGTCCTTAGACACCGCGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATGATACCATGAGTGCTTTAGGCCGTCCACAAGATATGTTTTCGGATACTGCCATACAATTACAACCTATCTTTGCTCAATGGGTACAAAATATCCATGCTACTGCGCCTGGCGTAACAGCTCCTGGTGCAACAACAAGTACTAGCTTAACGTGGGGAGGCGGCGAGTTAGTAGCAGTAGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTAGTCCATCACATTCATGCATTTACCATACATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGGAGTTCCCGTTTGATACCCGATAAAGCAAATCTAGGTTTTCGCTTTCCTTGCGATGGGCCTGGCCGAGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTTTATTCTGGATGTACAATGCAATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATTACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTTCGAGATTTCTTGTGGGCACAGGCATCGCAAGTCATTCAGTCTTATGGTTCTTCATTATCTGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTCATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGCGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACGACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGTGCTGCTGGTCCAGTGAATATTGCTTATTCTGGAGTTTATCAGTGGTGGTATACAATAGGATTACGCACCAATGAGGATCTTTATACTGGAGCTCTTTTTCTATTATTTCTTTCTACGCTGTCCTTAATAGCGGGTTGGTTACATCTACAACCCAAATGGAAACCAAGCCTTTCGTGGTTCAAAAACGCGGAATCTCGTCTCAATCATCATTTGTCAGGACTTTTCGGGGTAAGTTCTTTGGCTTGGACAGGACATTTAGTTCATGTTGCTATTCCCGCATCCAGGGGGGAGTACGTTCGATGGAATAATTTCTTAGATGTATTACCCTATCCCCAGGGGTTGGGACCCCTTTTGACGGGTCAATGGAATCTTTATGCCCAAAACCCTGATTCGAGTAATCATTTATTTGGTACCGCTCAAGGAGCGGGAACTGCCATTCTAACTCTTCTTGGGGGATTCCATCCACAAACACAAAGTTTGTGGCTGACCGATATGGCTCACCATCATTTAGCTATTGCATTTATTTTTCTCATTGCCGGTCACATGTATCGAACTAACTTCGGAATTGGGCACAGTATTAAAGATCTTTTAGAAGCGCATACTCCTCCGGGGGGTCGATTAGGGCGTGGGCATAAGGGCCTTTATGACACAATCAACAATTCGATTCATTTTCAGTTAGGTCTTGCTCTAGCTTCTTTAGGGGTTATTACTTCCTTAGTAGCTCAACATATGTACTCTTTACCTCCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCACCAATATATTGCAGGGTTCATCATGACAGGGGCTTTTGCTCATGGAGCTATTTTTTTCATTAGGGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCTAGCCTCTTTCTAGGATTCCATACCTTGGGCCTTTATGTTCATAACGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTGATCGAACCTATATTTGCCCAATGGATACAATCTGCTCATGGCAAGACGACATATGGGTTCGATATACTCTTATCTTCAACGAATGGCCCCGCTTTCAATGCGGGTCGAAGCCTATGGTTGCCCGGATGGTTGAATGCTGTTAATGAGAATAGTAATTCGCTTTTCTTAACAATAGGACCTGGGGATTTCTTGGTTCATCATGCTATTGCTCTAGGTTTGCATACAACTACATTGATTTTAGTAAAGGGCGCTTTAGATGCACGCGGTTCCAAATTAATGCCAGATAAAAAGGATTTTGGATATAGTTTTCCTTGTGACGGCCCAGGGCGCGGCGGTACTTGTGATATTTCTGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACTTTTTATTGGCATTGGAAACATATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTATCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTAGCTAATTTAATTCGCTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGCTCACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTCTTGATTGCCTCAACATCAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTTGTACTGTATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTGCCTTTTTAGATTTCTTTTTCTATTTATTTTTCCATCTAGGATTAGAACCGTATACTTGGTAATAATAGCAACGACACATTATGGCAAAAAAAAGTTTGATTCAGAGGGAGAAGAAGCGGCAGAAATTAGAACAGAAATATCATTTGATTCGTCAATCTTTAAAAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAACGAAAATGCGAGAAAAATTGCAATCCCTACCGCGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTTGACCGGAAGACCTAGAGCTAACTATCGACATTTTGGGCTATCCGGACACGTACTTCGAGAAATGGTTTATGAATGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCTTTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTGTATAAATGGACTATTCTATTTGTATAGATATTGGTAGAGGGGCGTATCCAACCCTCTTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGTATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTGGGGTTGCGGGTTCGATTCCCACTACCGCCTCCATACTCCTTCTTTATGATATATGCATGATATAATATATACATCATGCATTTGTATCTGGATTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTTCTCGGAAGAAGCAAAAAAATAAAAGAAAGAATAAAATATGAAAGAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATACTAAACTAAAAACAAAGAAAACTTTTTTGCATGATTCAAATGAAAAAGCTTTCTCAACGATTCCTATTCTACTAACAAGAGTAGACATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCCAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCGCTTGCTCGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCAGAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGCTATCTGCTCTTCCACTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGCGCTAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCCGCGGATCCTACTCTGGAAACAGAAATACCCACATTAATAGCGGGTCGAATTCCGGCATTGAATAGATCCGCAGATAAGAATATTTGTCCATCTGTAATGGAGATTACATTAGTAGGAATATAGGCGGAAACGTCTCCAGATTGAGTCTCAACTATTGGTAAAGCGGTCATACTTCCTTCGCCTAAAAGAGAATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGTCCGGGAGGTCTTCTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCCCTCCTCATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCGTATACGGAACGCCTGGAAATTATACTTGGAGCAGGAGATTCAATTAAGCGAGATTCGGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATTTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTTAAGTAATGAGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTAAACTAAGGACGGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATGGGGTATTATCTGTCCCGATAAATAGATAATTCCAGGAGTAATAAATAGGAGTAAATTAAATAAAGTATTGATATAATTGGAATTGTGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCGAAAGAATTTTTTTTTTAAGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATA
scaffold7104	Ensembl_Plants	sense_intronic	118825	118901	.	+	.	ID=gene:ENSRNA049478370	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold7104	Ensembl_Plants	LTR	118444	123506	35258	-	.	ID=2080190	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AGATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATTTACAATCCAATTTATCGATTCAATAGAATCCCAAAGAGGTGCATATGGTACCCAAATAAGATCAGGATAGATATGTTAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAGTAGAATGGAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCACATCTCATAATAAGAATGTGCACGATCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTAGAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGTAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAAACATACTCAATTCGATGGAATTCTTTGATCTTAAAGGGGATCTTCTATAATTTCACACATAAGGGGTTATTTCTTGGTTTCATCTAGTCATTAATAACTTGATTAGTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCATGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTCTATAATCCTGCATAATCTGGAATGTTATCAGTTCCGGTACATAGACCAAATAATACAATGCAAGCAAAAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCAAGAATTCACGTGGCTGAAGCTGAAGCAGCTACTTTCAAAGTAACAGAAAGAAAAGCAATGACTGGAGTGGGGGAGTCAGAGTCGAAAATAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTTCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCAAATCCATTCTTTTTTGAAATCGATTTCGAAAAAGAACTACTAATCCTTATCTTTTCGAGGAATCCTTCATCAGTTGTTGTGAATGACTAACTTTTTCAATCCTTTTGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAAGAGAACCATCTGATTTGATTTGTTCCCAATAGCCATGAGTCATCATCTTAGGGTGATCCAATTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCAATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCTGTAATAACGAACATGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTATACATTCAATGTACTCTACAGATAGAGGAATACATAAAGTTGAACATAATAAAATGATAAATTGAAAGATTTCGTTGAAATTGTTTGTTTGGAAATTTCCCAAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAATAATAGGGACGTTATGCTTATTACTAAACTTGTTGAAGATATGAAATAGAACCAAGGTCTATCTTTTTTATCAGAGGTTGAATCGATCATCAAAAGAAGAATTAGGCCAAAAATTAGGATACATTTTGGGAAAATGAAACTTCCATTCAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCTAGATAATGAACTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGTTATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTATATGCCATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCCGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTTGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCAAGATGTACAGATCCATGTGTCTACATACATAGATTATGTTCATGGATTAACGAAAATGTGCAAGTGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCTTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATATGTTTCTGTCTTTTGTTGAATCTTGTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCTGTTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAAATGGATAGGATTTTGTAGTTCTTTTTTCTGCAGTACCTCGATGTGACATGAGCATGAAAGAGGTTCAATAATCCGTTTTCTTTTTATAAGGGCTAAAATCGCTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAAATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATATGACTTTCCACAGAATTCTATATGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCTGTTTCCCTCCTTTTCCCGCTAGGACGGAAATCCTGTATTTTCCATATCCATATGATCGAGTCCTTAGGTTTCCAAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGATTGGGACCTGTTCTAAAAAAGTCGAGGTATTTCGAATTGTTTATTGACACAGACAAATTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCGTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACTCCGGATAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATTACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATTTGGGCTCTTCTATATTTGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCAATTTTTCCCTCTTCCTCTATCCCTATCCTACAGG
scaffold7104	Ensembl_Plants	sense_intronic	121928	122006	.	+	.	ID=gene:ENSRNA049478361	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGAAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTATTTTCGACTCTGAC	scaffold7104	Ensembl_Plants	LTR	118444	123506	35258	-	.	ID=2080190	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AGATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATTTACAATCCAATTTATCGATTCAATAGAATCCCAAAGAGGTGCATATGGTACCCAAATAAGATCAGGATAGATATGTTAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAGTAGAATGGAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCACATCTCATAATAAGAATGTGCACGATCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTAGAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGTAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAAACATACTCAATTCGATGGAATTCTTTGATCTTAAAGGGGATCTTCTATAATTTCACACATAAGGGGTTATTTCTTGGTTTCATCTAGTCATTAATAACTTGATTAGTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCATGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTCTATAATCCTGCATAATCTGGAATGTTATCAGTTCCGGTACATAGACCAAATAATACAATGCAAGCAAAAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCAAGAATTCACGTGGCTGAAGCTGAAGCAGCTACTTTCAAAGTAACAGAAAGAAAAGCAATGACTGGAGTGGGGGAGTCAGAGTCGAAAATAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTTCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCAAATCCATTCTTTTTTGAAATCGATTTCGAAAAAGAACTACTAATCCTTATCTTTTCGAGGAATCCTTCATCAGTTGTTGTGAATGACTAACTTTTTCAATCCTTTTGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAAGAGAACCATCTGATTTGATTTGTTCCCAATAGCCATGAGTCATCATCTTAGGGTGATCCAATTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCAATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCTGTAATAACGAACATGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTATACATTCAATGTACTCTACAGATAGAGGAATACATAAAGTTGAACATAATAAAATGATAAATTGAAAGATTTCGTTGAAATTGTTTGTTTGGAAATTTCCCAAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAATAATAGGGACGTTATGCTTATTACTAAACTTGTTGAAGATATGAAATAGAACCAAGGTCTATCTTTTTTATCAGAGGTTGAATCGATCATCAAAAGAAGAATTAGGCCAAAAATTAGGATACATTTTGGGAAAATGAAACTTCCATTCAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCTAGATAATGAACTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGTTATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTATATGCCATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCCGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTTGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCAAGATGTACAGATCCATGTGTCTACATACATAGATTATGTTCATGGATTAACGAAAATGTGCAAGTGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCTTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATATGTTTCTGTCTTTTGTTGAATCTTGTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCTGTTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAAATGGATAGGATTTTGTAGTTCTTTTTTCTGCAGTACCTCGATGTGACATGAGCATGAAAGAGGTTCAATAATCCGTTTTCTTTTTATAAGGGCTAAAATCGCTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAAATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATATGACTTTCCACAGAATTCTATATGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCTGTTTCCCTCCTTTTCCCGCTAGGACGGAAATCCTGTATTTTCCATATCCATATGATCGAGTCCTTAGGTTTCCAAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGATTGGGACCTGTTCTAAAAAAGTCGAGGTATTTCGAATTGTTTATTGACACAGACAAATTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCGTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACTCCGGATAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATTACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATTTGGGCTCTTCTATATTTGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCAATTTTTCCCTCTTCCTCTATCCCTATCCTACAGG
scaffold7104	Ensembl_Plants	sense_intronic	77182	77260	.	-	.	ID=gene:ENSRNA049478357	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	scaffold7104	Ensembl_Plants	LTR	75760	79455	13607	+	.	ID=2080189	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=ATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTACAAGAATGGGGTTCATTGATATTCCTGGTATAGTACATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTCATTTCTTGGTTTTGTCCAGTCATTAATAACTTGATTACTTTTAGATAATAGTAGATAGAAAGAACGATCATAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGAAGAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCAATTTTCCATATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATGGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATTGATTCTTTGTAGGAACTACCCATAATAACGAACTTGCAAAATGGATCTATTTATCATAAAGAGATTCATTGTTCCTAACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTTGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCTCACTCCTTCGTAGATGTCAGGAGTCCATTGATGAAAATGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTCAAATTCCTGGGGAGCTATACATTTGTGTATTGATAAGACCGTACACAATTTCTTGAAGCTCGATCTCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTATGGATAGAGGAATACATAAAGTTGCACATAATAAAATGAAAAATTGAAAGATTTCATTGAAATTGTTCATTTGTAAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGTTGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGACCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTAAAGAGAAGCAAATGAAACTCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTGATTCTGTACATGCCAGATCCTGAATTAGTAACTGCATCCGATCTCCAAAAAGTCCCGATTGTTTCGATTTTTTAAAAGGGATATTTACAGAATCCCCATGAATAGGATAAAACCTTATTCCATGCTATTTCCATATGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCTGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCCGTTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCAGAACTTAATTTGAAAGCTATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAATGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTTCGCGTCGATCCTTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTTTACGTATTGCTTGACGTCAAACCAATAGTGGATTTGTTTCTGTCTTTTGCTGAATCTTTTTCACGGCTTGATAGAGAATTTGATAAGCCAATGATTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCCGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCTGTTTTCTTTTTATAAGTGCTAAAATCACTTATTTTTTGGCTTTTTGACCCCATATTGT
scaffold61763	Ensembl_Plants	sense_intronic	21377	21455	.	-	.	ID=gene:ENSRNA049478235	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	scaffold61763	Ensembl_Plants	LTR	20721	23640	23006	+	.	ID=2080194	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGGTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTGCAAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGATCG
scaffold15169	Ensembl_Plants	sense_intronic	34029	34102	.	+	.	ID=gene:ENSRNA049477954	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	scaffold15169	Ensembl_Plants	LTR	32776	37931	37324	-	.	ID=2080278	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AGATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTTTTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAAT
scaffold15169	Ensembl_Plants	sense_intronic	33254	33330	.	+	.	ID=gene:ENSRNA049477950	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold15169	Ensembl_Plants	LTR	32776	37931	37324	-	.	ID=2080278	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AGATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTTTTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAAT
scaffold15169	Ensembl_Plants	sense_intronic	36365	36443	.	+	.	ID=gene:ENSRNA049477946	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	scaffold15169	Ensembl_Plants	LTR	32776	37931	37324	-	.	ID=2080278	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AGATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTTTTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAAT
scaffold17509	Ensembl_Plants	sense_intronic	14894	14968	.	+	.	ID=gene:ENSRNA049477910	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAAC	scaffold17509	Ensembl_Plants	LTR	13157	15899	18388	+	.	ID=2079965	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TGTATTTTCCCATCAACTAGCTAAAATTGATTAACCCTAGGATTAGGATCCTTTTTTCTTTTTTCCTCTATGTGTATTTTACATACCACAGTAATTTGCTATAGAGAATTTCTAATTTCTATTAAATCAAAATAAGATAATATAAGATATTATATTATTGCTGGAAAAAATTGTTATTTGATTTGATACATTGTGATCCTTAACGTTGATGAATTAAGAAAAACGGAAAGAGAGGGATTCGAACCCTCGGTAAACAAAAGTCTACATAGCAGTTCCAATGCTACGCCTTGAATCGCTCGGCCATCTCTCCTACATAACTTATTATGGAAAATAAACTGAGTGAATAGCGAGTTTTCTTATTCCTGCAGTACAGGTACAACCGCAACCACTCGGGGGTTCCATAGTTCTATTGGAAAAATTCCTTTTGATCTAAGTGGAAGGATACAGGATTTTTTACTAGAAATTGCGCTCGCTATAAAATAAAAGTTTTAATTTGGGTTTTCCCGCAACTAAAGAAAAAGAAAATGGAAGAATTCTTCTTATTGCATAATAAAATAAAGAAACCTTAGAATTCCGTTTGCATAAGATACGCTACACCATACTATCGAAATCAAAAATAGGGTATGAGACAATTAATAACTTTGAAAACACGAAATAGTTGATAACATAAGTTGTTGTTCAGAAATAGGAAAGTGGAATGAAATCCAGTCTTAGTCAAATATTTCATATCTCTTCGTGTCCAAGCAGAAGGAAAAGGATACAATTTGAGCTGAGCGGAAAATCCATATCTCTCTTATCCATTTAAAGCATATGGATTTAGAGTAGAGCATATGGATCAATCTATTTATAATTATAAGAATCGAATGTGTTTGTTTTTATGTTATTTTGTGAAGGAATGAAAACAATTCTATATAGAATGGGTTGGGAATTATGCCTAGATCCCGTGGAAATGGAAATTTCATTGATAAGACCTCCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCAGGAGAAAAAAAGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGCTTTTTTTTAGCCCTACCTATACCTCAGTCTTACGAAAAAGAGAGGGGGGTTGGCATAGAGAGAACCAAATTTGTAAAGCAAACAAACCCACGCTTCGGGAAGGTGAGGCGAACTAACAATTCCTTCCGTCGTGTATCCTCGATTGATGCGGCTTCAGATACTTCAATTGTTGATTTGAGTATTGAGCGAAAGGTTACACCTACAGGATATGGTATGGTATGGATTACAGGCCAATCCTACTCTATTAGTATCCGTAGGCAGCATAGGGGAGAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTACCCCTTTCCTGATCGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAGGTTTGTACTTTGGATACCCCTATAACCATCAAAGATCGTTGAAGTAGCTAATTCCTCTAAATAGGAGGCGTTGAGAACAAAGAAATTATTGGAGCTATCGTTTTCCTCTAGCATTAATAGAATTCATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTTGGAAAAATACCAGCCCCTTTCGGTTCATAATGAGACGGGACTAATTCTATTTTGATTCTATAGATTATTTCGCTTAGTACTATTATGTACAGAAGGGAGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAACGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTCTTACCGCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAAAAAGAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAAAGGGCTTTCTACATAGGGATCGTAAAAACAACGATTTTTCCCTATCAGCTGTAGGAAGGAAGGACACTTCACGAGAATCAAAAAACGAAGAAAGTATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATACAACTAAAAAAAACTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTAAGTTCTTTTTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAACCGGGATAGTTACCTCTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTC
scaffold42848	Ensembl_Plants	sense_intronic	28497	28580	.	+	.	ID=gene:ENSRNA049478435	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	scaffold42848	Ensembl_Plants	LTR	26974	33322	51922	-	.	ID=2079964	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ATCATCATTTGTCAGGACTTTTCGGGGTAAGTTCTTTGGCTTGGACAGGACATTTAGTTCATGTTGCTATTCCCGCATCCAGGGGGGAGTACGTTCGATGGAATAATTTCTTAGATGTATTACCCTATCCCCAGGGGTTGGGACCCCTTTTGACGGGTCAATGGAATCTTTATGCCCAAAACCCTGATTCGAGTAATCATTTATTTGGTACCGCTCAAGGAGCGGGAACTGCCATTCTAACTCTTCTTGGGGGATTCCATCCACAAACACAAAGTTTGTGGCTGACCGATATGGCTCCCCCTCATTTAGCTATTGCATTTATTTTTCTCATTGCCGGTCACATGTATCGAACTAACTTCGGAATTGGGCACAGTATTAAAGATCTTTTAGAAGCGCATACTCCTCCGGGGGGTCGATTAGGGCGTGGGCATAAGGGCCTTTATGACACAATCAACAATTCGATTCATTTTCAGTTAGGTCTTGCTCTAGCTTCTTTAGGGGTTATTACTTCCTTAGTAGCTCAACATATGTACTCTTTACCTCCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCACCAATATATTGCAGGGTTCATCATGACAGGGGCTTTTGCTCATGGAGCTATTTTTTTCATTAGGGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCTAGCCTCTTTCTAGGATTCCATACCTTGGGCCTTTATGTTCATAACGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTGATCGAACCTATATTTGCCCAATGGATACAATCTGCTCATGGCAAGACGACATATGGGTTCGATATACTCTTATCTTCAACGAATGGCCCCGCTTTCAATGCGGGTCGAAGCCTATGGTTGCCCGGATGGTTGAATGCTGTTAATGAGAATAGTAATTCGCTTTTCTTAACAATAGGACCTGGGGATTTCTTGGTTCATCATGCTATTGCTCTAGGTTTGCATACAACTACATTGATTTTAGTAAAGGGCGCTTTAGATGCACGCGGTTCCAAATTAATGCCAGATAAAAAGGATTTTGGATATAGTTTTCCTTGTGACGGCCCAGGGCGCGGCGGTACTTGTGATATTTCTGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACTTTTTATTGGCATTGGAAACATATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTATCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAGGGATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTAGCTAATTTAATTCGCTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGCTCACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTCTTGATTGCCTCAACATCAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTTGTACTGTATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTGCCTTTTTAGATTTCTTTTTCTATTTATTTTTCCATCTAGGATTAGAACCGTATACTTGGTAATAATAGCAACGACACATTATGGCAAAAAAAAGTTTGATTCAGAGGGAGAAGAAGCGGCAGAAATTAGAACAGAAATATCATTTGATTCGTCAATCTTTAAAAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAACGAAAATGCGAGAAAAATTGCAATCCCTACCGCGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTTGACCGGAAGACCTAGAGCTAACTATCGACATTTTGGGCTATCCGGACACGTACTTCGAGAAATGGTTTATGAATGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCTTTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTGTATAAATGGACTATTCTATTTGTATAGATATTGGTAGAGGGGCGTATCCAACCCTCTTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGTATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTGGGGTTGCGGGTTCGATTCCCACTACCGCCTCCATACTCCTTCTTTATGATATATGCATGATATAATATATACATCATGCATTTGTATCTGGATTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTTCTCGGAAGAAGCAAAAAAATAAAAGAAAGAATAAAATATGAAAGAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATACTAAACTAAAAACAAAGAAAACTTTTTTGCATGATTCAAATGACAAAGCTTTCTCAACGATTCCTATTCTACTAACAAGAGTAGACATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCCAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCGCTTGCTCGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCAGAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGCTATCTGCTCTTCCACTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGCGCTAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCCGCGGATCCTACTCTGGAAACAGAAATACCCACATTAATAGCGGGTCGAATTCCGGCATTGAATAGATCCGCAGATAAGAATATTTGTCCATCTGTAATGGAGATTACATTAGTAGGAATATAGGCGGAAACGTCTCCAGATTGAGTCTCAACTATTGGTAAAGCGGTCATACTTCCTTCGCCTAAAAGAGAATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGTCCGGGAGGTCTTCTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCCCTCCTCATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCGTATACGGAACGCCTGGAAATTATACTTGGAGCAGGAGATTCAATTAAGCGAGATTCGGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATTTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTTAAGTAATGAGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTAAACTAAGGACGGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATGGGGTATTATCTGTCCCGATAAATAGATAATTCCAGGAGTAATAAATAGGAGTAAATTAAATAAAGTATTGATATAATTGGAATTGTGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCGAAAGAATTTTTTTTTTAAGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATA
Pt	Ensembl_Plants	sense_intronic	46704	46957	.	+	.	ID=gene:ENSRNA049476250	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=CTACGGACTTGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACGTTGTGTTGTTAGTGGAATTCCTTCTAGTTCTAAATTAGAGAAAGAGGG	Pt	Ensembl_Plants	LTR/Gypsy	46438	46909	3139	+	.	ID=2236296	repeat_name=LTR_AC188734.2_15331	repeat_type=LTRs	sequence=AAAAGTAAGACGGGAGGTGGGGGAGATAAAAACTTTTGGATATATTGATTCGGATTGAATTGCAAATACATCAAGGATAGAATCAATTCAATTCTGAATTGCAATAAGCAAGCGAGGTCTCTCAAATAGAGTCGAACTGAACTGCTAGACTACGTTGAGTGATGAACTCAATGATTCAAAAAAAAACTAAGAGATGGATGAAATTACACAAGGAATCCTGGTCTCAAAGAAGAGGGAAATGGGGATATGGCGAAATCGGTAGACGCTACGGACTTGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACG
Pt	Ensembl_Plants	sense_intronic	90179	90252	.	-	.	ID=gene:ENSRNA049476227	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Pt	Ensembl_Plants	LTR	86350	91202	36415	+	.	ID=2080211	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGA
Pt	Ensembl_Plants	sense_intronic	90951	91027	.	-	.	ID=gene:ENSRNA049476212	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	Pt	Ensembl_Plants	LTR	86350	91202	36415	+	.	ID=2080211	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGA
Pt	Ensembl_Plants	sense_intronic	87838	87916	.	-	.	ID=gene:ENSRNA049476195	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Pt	Ensembl_Plants	LTR	86350	91202	36415	+	.	ID=2080211	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGA
Pt	Ensembl_Plants	sense_intronic	43187	43261	.	-	.	ID=gene:ENSRNA049476170	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAAC	Pt	Ensembl_Plants	LTR	41504	46232	33429	-	.	ID=2079985	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ATCAAGCTAACTTTATCTTTAAGAAGTTTTAGTATTTTTTTATTTTTATAAGTATAACTTCAAATTTAGAACTAGTTAATAGCTAAGATTAATAACTAATATCTGAGATTTTACGGATTTCCTATACTATACCTATTTCTATTTGTTACACTATTTCCGTTATGTAAGCCCACTTAGCTCAGAGGTTAGAGCATCGCATTTGTAATGCGAGGGTCATCGGTTCAAATCCGATAGTCGGCTTTTTTTTCTCTATCGATGTTCTACGAACAAGAATCTCTTTTTTTCCGAATTAAATGGAGAATCCAGGATCTTTTATGTTTTTTACCTTACAATTTTGCTAGATACAAAACAATAAAATAAATAATATATATACAAAAAAAAAGATTTTGATGAAATTCCATTTTTTGGGGTACTTTAGTTGATTTTACTCTGTTTATCCTGTAGTTTAATTCAGTTTTAATTTCGATGTATTCTGTAATGTAAATACAATGAAATTAATTGTGTAAAATGAAATTTCAATAAAATAAAAAAAGGAGTCTTCATGTCCCGTTATCGAGGACCTCGTTTAAAAAAAATACGCCGTCTGGGAGCTTTACCAGGACTCACTAGAAAAACACCTAAATCCGGAAGTAATCTTAAAAAAAAATTCAATTCTGGGAAAAAGGAGCAATATCGTATTCGTCTTCAAGAAAAACAGAAATTGCGTTTTCATTATGGTCTGACAGAACGACAATTACTTAGATATGTACATATCGCTGGAAAAGCAAAAAGGTCAACAGGCCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAATATCCTTTTTCGATTGGGTATGGCTTCAACCATTCCTGGGGCCCGCCAATTAGTCAACCATAGACATATTTTAGTTAATGGTCGTATAGTCAATATACCAAGTTTTCGTTGCAAACCCCGAGATATTATTACTACGAAAGATAACCAAAGATCAAAAGGTCTGGTTCAAAATTATATTGCTTCATCGGACCCGGGGAAATTGCCAAAGCATTTGGCGATTGACACGTTGGAATATAAAGGACTAGTAAATAAAATCCTAGATAGGAAGTGGGTCGGTCTCAAAATAAATGAGTTGTTAGTTGTAGAATATTACTCTCGTCAGACTTGAACTTAACGAAAAAAGGAAAGGTTCATAGAATTTTCTTCCCCTTCCCCTTTCCCCGAACTAAATCGCCCTAAGACCATTACCATTAATTTGTATTTTCCCATCAACTAGCTAAAATTGATTAACCCTAGGATTAGGATCCTTTTTTCTTTTTTCCTCTATGTGTATTTTACATACCACAGTAATTTGCTATAGAGAATTTCTAATTTCTATTAAATCAAAATAAGATAATATAAGATATTATATTATTGCTGGAAAAAATTGTTATTTGATTTGATACATTGTGATCCTTAACGTTGATGAATTAAGAAAAACGGAAAGAGAGGGATTCGAACCCTCGGTAAACAAAAGTCTACATAGCAGTTCCAATGCTACGCCTTGAACCGCTCGGCCATCTCTCCTACATAACTTATTATGGAAAATAAACTGAGTGAATAGCGAGTTTTCTTATTCCTGCAGTACAGGTACAACCGCAACCACTCGGGGGTTCCATAGTTCTATTGGAAAAATTCCTTTTGATCTAAGTGGAAGGATACAGGATTTTTTACTAGAAATTGCGCTCGCTATAAAATAAAAGTTTTAATTTGGGTTTTCCCGCAACTAAAGAAAAAGAAAATGGAAGAATTCTTCTTATTGCATAATAAAATAAAGAAACCTTAGAATTCCGTTTGCATAAGATACGCTACACCATACTATCGAAATCCAAAATAGGGTATGAGACAATTAATAACTTTGAAAACACGAAATAGTTGATAACATAAGTTGTTGTTCAGAAATAGGAAAGTGGAATGAAATCCAGTCTTAGTCAAATATTTCATATCTCTTCGTGTCCAAGCAGAAGGAAAAGGATACAATTTGAGCTGAGCGGAAAATCCATATCTCTCTTATCCATTTAAAGCATATGGATTTAGAGTAGAGCATATGGATCAATCTATTTATAATTATAAGAATCGAATGTGTTTGTTTTTATGTTATTTTGTGAAGGAATGAAAACAATTCTATATAGAATGGGTTGGGAATTATGCCTAGATCCCGTGGAAATGGAAATTTCATTGATAAGACCTCCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCAGGAGAAAAAAAGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGCTTTTTTTTAGCCCTACCTATACCTCAGTCTTACGAAAAAGAGAGGGGGGTTGGCATAGAGAGAACCAAATTTGTAAAGCAAACAAACCCACGCTTCGGGAAGGTGAGGCGAACTAACAATTCCTTCCGTCGTGTATCCTCGATTGATGCGGCTTCAGATACTTCAATTGTAGATTTGAGTATTGAGCGAAAGGTTACACCTACAGGATATGGTATGGTATGGATTACAGGCCAATCCTACTCTATTAGTATCCGTAGGCAGCATAGGGGAGAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTACCCCTTTCCTGATCGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAGGTTTGTACTTTGGATACCCCTATAACCATCAAAGATCGTTGAAGTAGCTAATTCCTCTAAATAGGAGGCGTTGAGAACAAAGAAATTATTGGAGCTATCGTTTTCCTCTAGCATTAATAGAATTCATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTTGGAAAAATACCAGCCCCTTTCGGTTCATAATGAGACGGGACTAATTCTATTTTGATTCTATAGATTATTTCGCTTAGTACTATTATGTACAGAAGGGAGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAACGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTCTTACCGCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAAAAGAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAAAGGGCTTTCTACATAGGGATCGTAAAAACAACGATTTTTCCCTATCAGCTGTAGGAAGGAAGGACACTTCACGAGAATCAAAAAACGAAGAAAGTATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATACAACTAAAAAAAACTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTAAGTTCTTTTTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAACCGGGATAGTTACCTTTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCGGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATTTGAATAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGTAAGATCGAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTTATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAAGTAATAAAGTGAATAAAAAGAGGGGGCAATCTAAATATTGCTAATATATTAGGACCATCTTATTAATAATTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAAAAATACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAATATTTGTTTTTCAAGATAAACAATGTCCGTTAGGCACCTAATCTTTATGTCATAATAGACCCGAACACTTGCCTCGGATTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAAAAATAGAAGGATGGTAGATAGTAAAGAAAAGAACTAATCACAATATCTATCTTTCAA
Pt	Ensembl_Plants	sense_intronic	113223	113300	.	-	.	ID=gene:ENSRNA049476161	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGAAGCCGTATGAAGCTAAGGTTTCATGTACGGTTTTGAAATAGCGGTGGGAACTGTGATGTTATCACCGACTATGAT	Pt	Ensembl_Plants	Retroelement	112799	113411	2914	+	.	ID=2080352	repeat_name=RXX_Gk_DX403548.1_7560	repeat_type=Unknown	sequence=ATCTTATTGTGATAGAAATGAAGAGAAATAAATAAGCTTTAGTTAATGTAATAAATATACCCATTGTCATTTCCAAAATTCCAACTGCTTTATTCATTTGGAAAAAATCAAAAAAGGATATATAGGGAATAGATAAATTCCACCCGCCCAAGTAGAGAACTGTTACAAATAAAGAAGAAACTAATAAATTTAGGTAAGAAACAAGATAAAATAAACCATATTTGATACCGGAATATTCAGTTTGGTAACCTGCTACTAATTCTTCCTCCGCTTCTGGTAAATCAAAGGGTAATCTTTCACATTCTGCCAAAGAAGAAATTAAAAAAACCAGAAAACCTATAGGCTGACGCCAAATATTCCATCCAAAAAAACCGTATTTTGACTGTGCTTCAACTATATCAACTGTACTTGAACTGTTAGATAATCATAGTCGGTGATAACATCACAGTTCCCACCGCTATTTCAAAACCGTACATGAAACCTTAGCTTCATACGGCTTCTCTATGATCAGAAAAAGGAAAGGACTGTTTTGTTCCTAGCCCCGGGGGCGTAGATAGAATTAGATAAAATAAAATAGATTTGAAAGTCCTAAATTAGACCAAAGGAATTCCG
scaffold57854	Ensembl_Plants	sense_intronic	168	244	.	+	.	ID=gene:ENSRNA049476070	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold57854	Ensembl_Plants	LTR	1	2470	18905	-	.	ID=2080219	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCATCCATGAGTAAATATTTTATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAAACAATAGGTAGGAATATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAGCATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATTGTCCGATTCTCCTTCTATCGATTCTTTTCCGATCGAGATGTATGGATCCATGTGTCTACATACATAGATTCTATTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCACTCCCTTTGGCAGCATCTACTAATTCAGAACTTAATTTGAAAGCCATATTTTGACCCAGACATTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACAACTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTTTGTTTACTCACTTTAAAATGAGTATCTGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATTGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCAAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGCGAGGTATTTTGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTACGACAACATCTAGGGTTCCTCGAATAATGCAATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTATAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGTAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCACCCTTCTTCCACTCCGTCCCAAAGACTAACTAAGACCAATTGAGTCACGTTTTCATTTTCTAATTGAACACTTTCCATTTATAATATGATTAAAGGAGAAGATTGTTCTTTTACCAAAC
scaffold57854	Ensembl_Plants	sense_intronic	942	1015	.	+	.	ID=gene:ENSRNA049476066	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGTTGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	scaffold57854	Ensembl_Plants	LTR	1	2470	18905	-	.	ID=2080219	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCATCCATGAGTAAATATTTTATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAAACAATAGGTAGGAATATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAGCATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATTGTCCGATTCTCCTTCTATCGATTCTTTTCCGATCGAGATGTATGGATCCATGTGTCTACATACATAGATTCTATTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCACTCCCTTTGGCAGCATCTACTAATTCAGAACTTAATTTGAAAGCCATATTTTGACCCAGACATTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACAACTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTTTGTTTACTCACTTTAAAATGAGTATCTGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATTGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCAAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGCGAGGTATTTTGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTACGACAACATCTAGGGTTCCTCGAATAATGCAATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTATAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGTAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCACCCTTCTTCCACTCCGTCCCAAAGACTAACTAAGACCAATTGAGTCACGTTTTCATTTTCTAATTGAACACTTTCCATTTATAATATGATTAAAGGAGAAGATTGTTCTTTTACCAAAC
scaffold38997	Ensembl_Plants	sense_intronic	723	797	.	+	.	ID=gene:ENSRNA049474688	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAAC	scaffold38997	Ensembl_Plants	LTR	1	1312	10201	+	.	ID=2079987	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=CCTCAGGAGAAAAAAAGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTTTGCTTTTTTTAGCCCTACCTATACCCCAGTCTTACGAAAAAGAGAGGGGGTTGGCATAGAGAGAACCAAATTTGTAAAGAAAACAAACCCACGCTTCGGGAAGGTGAGGCGAACTAACAATTCCTTCCGTCGTGTATCCTCGATTGATGCGGCTTCAGATACTTCAATTGTAGATTTGAGTATTGAGCGAAAGGTTACACCTACAGGATATGGTATGGTATGGATTACAGGCCAATCCTACTCTATTAGTATCCGTAGGCAGCATAGGGGAGAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTACCCCTTTCCTGATCGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAGGTTTGTACTTTGGATACCCCTATAACCATCAAAGATCGTTGAAGTAGCTAATTCCTCTAAATAGGAGGCGTTGAGAACAAAGAAATTATTGGAGCTATCGTTTTCCTCTAGCATTAATAGAATTCATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTTGGAAAAATACCAGCCCCTTTCGGTTCATCATGAGACGGGACTAATTCTATTTTGACTCTATAGATTATTTCGCTTAGTACTATTATGTACAGAAGGGAGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAACGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTCTTACCGCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAAAAAAAAAAAAAAGAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAAAGGGCTTTCTACATAGGGATCGTAAAAACAACGATTTTTCCCTATCAGCTGTAGGAAGGAAGGACACTTCACGAGAATCAAAAAACGAAGAAAGTATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATACAACTAAAAACTAAAAAACTGCTTACTT
scaffold132753	Ensembl_Plants	sense_intronic	5219	5295	.	+	.	ID=gene:ENSRNA049482839	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold132753	Ensembl_Plants	LTR	5044	5403	3091	-	.	ID=2080258	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAG
scaffold166508	Ensembl_Plants	sense_intronic	3488	3741	.	-	.	ID=gene:ENSRNA049482735	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=CTACGGACTTGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAACTTCAGAGAAACCCTAGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACGTTGTGTTGTTAGTGGAATTCCTTCTAGTTCTAAATTAGAGAAAGAGGG	scaffold166508	Ensembl_Plants	LTR/Gypsy	3536	4005	3075	-	.	ID=2236302	repeat_name=LTR_AC188734.2_15331	repeat_type=LTRs	sequence=AAAAAGTAAGACGGGAGGTGGGGGAGATAAAAACTTTTGGATATATTGATTCGGATTGAATTGCAAATACATCAAGGATAGAATCAATTCAATTCTGAATTGCAATAAGCAAGCGAGGTCTCTCAAATAGAGTCGAACTGAACTGCTAGACTACGTTCAGTGATGAACTCAATGATTCAAAAAAACTAAGAGATGGATGAAATTACATGAGGAATCCTGGTCTCAAATAAGAGGGAAATGGGGATATGGCGAAATCGGTAGACGCTACGGACTTGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAACTTCAGAGAAACCCTAGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTAC
scaffold184898	Ensembl_Plants	sense_intronic	5514	5592	.	+	.	ID=gene:ENSRNA049482683	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGCGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTTGACTCTGAC	scaffold184898	Ensembl_Plants	LTR	5262	5644	2792	-	.	ID=2080266	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACAACTGGAGTGGGGGAGTCAGAGTCAAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCGCGGCTCCTAAGTGATAAAAGAAAGAAGAACTTGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTTGAAATCGATTTCGAAAACGAAGTACTAATCCTTAACTTTTCGAGGAATCCTTTATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTAGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTTGTTCCCAATAGCCA
scaffold80374	Ensembl_Plants	sense_intronic	30574	30638	.	-	.	ID=gene:ENSRNA049482549	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCGAGATCCACCCTAC	scaffold80374	Ensembl_Plants	LTR	26823	34284	58552	+	.	ID=2080233	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TTCAATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCACCAAGGCATCTTAAAAGTGAATCGTATTCCATGATATCTATCTAGTGTGATGTATGGAATATATGACAAAGGTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGGTTGGACAACCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATATATATTATATCAAAAAGATGGACAATCAAACCTATTTATCGATTCAATAGAAGCCCAAAGAGGTGAATAGGGTCCCAAATAACGAGAGATATATGTAATGGAAAAAGAAGATCCGATTACGCCTATTCCTAATCCTAAATGGAATGTAACGACGTAGGGATCCATATGTAAACATAGTATCTATTTAGATACGCTCGAATAGCCCCTCTCCTAATGAGAATGTATATAACCCTATTCTGGTCTGGTCCAGTATGGAATGAACTTATAATCATAGAATCGACTCGATCATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCCCATTTTGGGCGGAAGAGGTCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAGAAGCTAAAAAAGGGTATCCTGAGCCATTTCAATAATCGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAATCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAACAACGCTCGTAAGGAGTCCTATTGAAACCAAAAAATATAGGCCTGCCTGCCATCCACACCAGAATAAATGGAGTTTTCCGAAAAAACCTGCTAGTGGAGGAAGACCCCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCCGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCACCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCAATTTGACCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAATGAGATTCCCCAATATCATGCTAAGAATAGCTAGAATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAAAATTCGAGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACAACTGGAGTGGGAGAGTCAGAGTCGAAAAGAGGATTCCTCACTTCTTTCTCTCATTCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCATCTTCTTTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCGATTTCTAAAAAGGATTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTTGAATGACTGATTTTTCTCAATCTTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGATTGAGAAATAGAACCATCTGATTTGATTCGTTCTCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCGACGGATGCTCCTATTACACTCGTATTCTCTGAAGGATGAGAACCAATTATGTAGCATCTACATCGAGAATTCAAGTATTGTATACGTCATTAGTCCGATCCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGAATCCCTTTATGATAAAGGGATTCGTTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAGTAAAAGTTATGTCTTGGTCCGAGTGGGGATAGCATTTCTCTTCTGCATGTCCATGGAGTTTTGAAAAATCCAAACATCTCAGAGATAGATAGAGAGGTAGGAATTTATCGATAGCGAACGAACCGCACTCCTTCGTATACGTCAGGAGTCCATTGATGAGAAGGGGCTGGGGAAAGCTTGAACCCAATTCCTACAGTGATGAATATAAGCGCAATTGAAATTCCCGGGGAGTTATACATTTGTGTATTGATAAGACCATTCACTATTTCTTGAAGCTCGATCTCTCCCCCGGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGGAGCATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCGCCGCATAAAAACATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATCATAGGGTCTTCTCTCCATCGGAATAATAGGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGATGAAATATAACCAAGGTATATCTTTTTGATCTGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATAAAACTTCCATCGAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAATCCCAATTGTTTCGAACTTTCTCTTTTTTTTTTGGAATGGAATATTTAGGGAATCCCCATAAATAGGATCAAATCAAACCTTATTCCATGTATTTACATGAGATTCCTCTTTCTTATTCTTAAGCAAGTCCCCGAGAGGGCTTAGTTGATCTATGATTTATGTTTCATCTTTCGTTTCCTTTTCGTTTGTTTCGAGAAATAGATCGATCAATTCCGATTCTTTCTTTTTCTATTGATTCTTTTCCGATCGAGATGTATGGATCCATGAGTCTATGTGTCTATATGGATCCTGTTCATGGATTAACGAAAATGTGCAAAAGCTCTATTTGCCTCTGCCATTCTATGAGTCTCTTCTTTTTTGCGTATGGCATCGCCACTCCCTTTGGCAGCATCCACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGTTTTCGGGATGCCCCTAATAACCAACGAATGGCAAGTGCTTTTCCTTGTGTGGATCCTATTTCAATGGGAACTTGATGAGTCGATCCGCCTACACGTCTTGCTTTTACTGCTATATCGGGAGTTACTCCACGTATTGCTTGACGTAAAACAGATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCATGGCTCGATAGATAATTTGATAAGCCAATGATTTTTTTCCGTGTTTCAGAATACGGTTAACCAACATGTTAACTAATCGATTACGATAAATTGGATCGGATTTTGCAGTTTTTTCTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGGGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCATTTATTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTTCACAGAATTCTATATGTATCTATGAGATAGAGTACGGAATTCTGTTTACTCACTTTAAATTGAGTATCCCTTTCCCTCCTTTTCCTTCTAGGATTGGAAATCTTGTATTTTACATATCCATACGATTGAGTCCTTGGGTTTCCGAAATAGTGTAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTAAAAAAGTCGAGGCATTTCGAATTGTTTGTTGACACGGACAAAGTCAAGGAAAACTTCTGAAATTATTTCAATATTGGACCTTGGACATATAATAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCACACACTTTACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAACAATGTGATATCTCACACCGGGTAAATCCTTAACCCTCCCCCCTCTTACTAAGACTACAGAATGTTCTTGTGAATTATGGCCAATACCGGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTAATGGGATCCTTTTCCTCGTTCGAGAATCTCCTCCCTTCTTCCACTCCGTCCCGAAGAGTAATTAGGACCAATTCAGTCACGTTTTCATGTTCCAATTGAACACTTTCCTTTTTTGATTATTCTCAAAGGAGAAGATTATTCTTTTTACCAAACATATGCGGATCCAATCATGATCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCCCCTTGCCCCTCATTCTTCGAGAATCAGAAAGATCCTTTTAAAGTTTGAATTTGGGCTCTTCTACTTCATTTTTATTTCTTTTTTTATTATTTTTCCCTCTCTTTTTTTTATTCCCTTCCATCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGAATCTAACCCACTTTCTCATTGAGCGAAGGGTACGAAAAAAATCAGATGGATTTTTCGAGCAAAAGGACTATGTGAAATCTTCGGTTTTTTCCTCTTTCTCTATCCCTATCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTATATCTGTATGAATCAATATTATTACATTCCAATTCCTTCCCGGTACCTCCCAAGGAAAATCCCAAATTGGATCCCAAATTGACGGGTTAGTGTGAGCGTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATATGATCCGATCGATTGCGTAAAGCACGCGGTAGCAACGGAACCGAGGAAAGTATACAGAAAGTTCTTTTCTATTCTATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTACATTTTTTCTCTGTGGACCGAGGAGAAAGGGGACTCGGCGGGAAGAAGATTGTACCATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACACGGATTCTGGCAATGCAATGTAGTTGGATTCTCATATCGATCCGAATCAATCATCCTTTCCACGGAGGCAAATCTTTGTCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCTCGGTAGGACATACATGTATTTTATTTCTATTACTATGAAATTCATAAATGAAGTAGTTAAAGGCGGGGTTACCATTATTCTTTTTGTAGTGACGAATCTTGTATGTAGAAAAGGAATTTGTCCATTTTTTGGGGTCTCAAAGGGGCGTGGAAACACATAAGAACTCTTGAATGGAAAAAAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCACAAGAAGAAGGGGTTGATCCGTATCATCTTGACTTGGTTCTGATTTCTCTATTTTATTAAGAATACCGAGCCGGGTTCTTCTCCTACCCGTATCGAATAGAACATGCCGAGACAAATCTTCTTCATGTAAAACCTACTTTATTTAGATCGGGAAAATCATACGGTTTTATGAAACCATGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTCTGATAGGAGCAGTTAACAATTGAATCCAAATTTTCCCATTCTTTTCGTATCCGTAATAGTGCGAAAAGAAGGCCCGACTCCAAGTTGTTCAAGAATAGTGGCGTTGAGTTTCTCGACCCTTTGCCTTAGGATTAGTCAGTTCTATTTCTCGATGGGAAGGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAGCCTGATTATCCCTAAACCCAATGTGAGTTTTTCTATTTTGACTTGACTTGCTTCCCCACCGGTCGTGATCGAATGAGAATGGATAAGAGGCTTGTGGGATTGACGTGAGGGGGTAGGGATGGCTATATTTCTTGGAGCGAACTCTAGGCGAATATGAAGCGCATGGATACAAGCCTTGGAATGAAAGACAATTCCGAATCAGCTTTGTCTACGAACAAGGAAGCTATAAGTAATGCAACTATGAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGCAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCCGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAG
scaffold80374	Ensembl_Plants	sense_intronic	31333	31409	.	-	.	ID=gene:ENSRNA049482551	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCC	scaffold80374	Ensembl_Plants	LTR	26823	34284	58552	+	.	ID=2080233	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TTCAATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCACCAAGGCATCTTAAAAGTGAATCGTATTCCATGATATCTATCTAGTGTGATGTATGGAATATATGACAAAGGTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGGTTGGACAACCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATATATATTATATCAAAAAGATGGACAATCAAACCTATTTATCGATTCAATAGAAGCCCAAAGAGGTGAATAGGGTCCCAAATAACGAGAGATATATGTAATGGAAAAAGAAGATCCGATTACGCCTATTCCTAATCCTAAATGGAATGTAACGACGTAGGGATCCATATGTAAACATAGTATCTATTTAGATACGCTCGAATAGCCCCTCTCCTAATGAGAATGTATATAACCCTATTCTGGTCTGGTCCAGTATGGAATGAACTTATAATCATAGAATCGACTCGATCATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCCCATTTTGGGCGGAAGAGGTCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAGAAGCTAAAAAAGGGTATCCTGAGCCATTTCAATAATCGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAATCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAACAACGCTCGTAAGGAGTCCTATTGAAACCAAAAAATATAGGCCTGCCTGCCATCCACACCAGAATAAATGGAGTTTTCCGAAAAAACCTGCTAGTGGAGGAAGACCCCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCCGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCACCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCAATTTGACCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAATGAGATTCCCCAATATCATGCTAAGAATAGCTAGAATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAAAATTCGAGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACAACTGGAGTGGGAGAGTCAGAGTCGAAAAGAGGATTCCTCACTTCTTTCTCTCATTCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCATCTTCTTTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCGATTTCTAAAAAGGATTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTTGAATGACTGATTTTTCTCAATCTTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGATTGAGAAATAGAACCATCTGATTTGATTCGTTCTCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCGACGGATGCTCCTATTACACTCGTATTCTCTGAAGGATGAGAACCAATTATGTAGCATCTACATCGAGAATTCAAGTATTGTATACGTCATTAGTCCGATCCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGAATCCCTTTATGATAAAGGGATTCGTTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAGTAAAAGTTATGTCTTGGTCCGAGTGGGGATAGCATTTCTCTTCTGCATGTCCATGGAGTTTTGAAAAATCCAAACATCTCAGAGATAGATAGAGAGGTAGGAATTTATCGATAGCGAACGAACCGCACTCCTTCGTATACGTCAGGAGTCCATTGATGAGAAGGGGCTGGGGAAAGCTTGAACCCAATTCCTACAGTGATGAATATAAGCGCAATTGAAATTCCCGGGGAGTTATACATTTGTGTATTGATAAGACCATTCACTATTTCTTGAAGCTCGATCTCTCCCCCGGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGGAGCATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCGCCGCATAAAAACATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATCATAGGGTCTTCTCTCCATCGGAATAATAGGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGATGAAATATAACCAAGGTATATCTTTTTGATCTGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATAAAACTTCCATCGAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAATCCCAATTGTTTCGAACTTTCTCTTTTTTTTTTGGAATGGAATATTTAGGGAATCCCCATAAATAGGATCAAATCAAACCTTATTCCATGTATTTACATGAGATTCCTCTTTCTTATTCTTAAGCAAGTCCCCGAGAGGGCTTAGTTGATCTATGATTTATGTTTCATCTTTCGTTTCCTTTTCGTTTGTTTCGAGAAATAGATCGATCAATTCCGATTCTTTCTTTTTCTATTGATTCTTTTCCGATCGAGATGTATGGATCCATGAGTCTATGTGTCTATATGGATCCTGTTCATGGATTAACGAAAATGTGCAAAAGCTCTATTTGCCTCTGCCATTCTATGAGTCTCTTCTTTTTTGCGTATGGCATCGCCACTCCCTTTGGCAGCATCCACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGTTTTCGGGATGCCCCTAATAACCAACGAATGGCAAGTGCTTTTCCTTGTGTGGATCCTATTTCAATGGGAACTTGATGAGTCGATCCGCCTACACGTCTTGCTTTTACTGCTATATCGGGAGTTACTCCACGTATTGCTTGACGTAAAACAGATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCATGGCTCGATAGATAATTTGATAAGCCAATGATTTTTTTCCGTGTTTCAGAATACGGTTAACCAACATGTTAACTAATCGATTACGATAAATTGGATCGGATTTTGCAGTTTTTTCTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGGGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCATTTATTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTTCACAGAATTCTATATGTATCTATGAGATAGAGTACGGAATTCTGTTTACTCACTTTAAATTGAGTATCCCTTTCCCTCCTTTTCCTTCTAGGATTGGAAATCTTGTATTTTACATATCCATACGATTGAGTCCTTGGGTTTCCGAAATAGTGTAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTAAAAAAGTCGAGGCATTTCGAATTGTTTGTTGACACGGACAAAGTCAAGGAAAACTTCTGAAATTATTTCAATATTGGACCTTGGACATATAATAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCACACACTTTACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAACAATGTGATATCTCACACCGGGTAAATCCTTAACCCTCCCCCCTCTTACTAAGACTACAGAATGTTCTTGTGAATTATGGCCAATACCGGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTAATGGGATCCTTTTCCTCGTTCGAGAATCTCCTCCCTTCTTCCACTCCGTCCCGAAGAGTAATTAGGACCAATTCAGTCACGTTTTCATGTTCCAATTGAACACTTTCCTTTTTTGATTATTCTCAAAGGAGAAGATTATTCTTTTTACCAAACATATGCGGATCCAATCATGATCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCCCCTTGCCCCTCATTCTTCGAGAATCAGAAAGATCCTTTTAAAGTTTGAATTTGGGCTCTTCTACTTCATTTTTATTTCTTTTTTTATTATTTTTCCCTCTCTTTTTTTTATTCCCTTCCATCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGAATCTAACCCACTTTCTCATTGAGCGAAGGGTACGAAAAAAATCAGATGGATTTTTCGAGCAAAAGGACTATGTGAAATCTTCGGTTTTTTCCTCTTTCTCTATCCCTATCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTATATCTGTATGAATCAATATTATTACATTCCAATTCCTTCCCGGTACCTCCCAAGGAAAATCCCAAATTGGATCCCAAATTGACGGGTTAGTGTGAGCGTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATATGATCCGATCGATTGCGTAAAGCACGCGGTAGCAACGGAACCGAGGAAAGTATACAGAAAGTTCTTTTCTATTCTATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTACATTTTTTCTCTGTGGACCGAGGAGAAAGGGGACTCGGCGGGAAGAAGATTGTACCATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACACGGATTCTGGCAATGCAATGTAGTTGGATTCTCATATCGATCCGAATCAATCATCCTTTCCACGGAGGCAAATCTTTGTCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCTCGGTAGGACATACATGTATTTTATTTCTATTACTATGAAATTCATAAATGAAGTAGTTAAAGGCGGGGTTACCATTATTCTTTTTGTAGTGACGAATCTTGTATGTAGAAAAGGAATTTGTCCATTTTTTGGGGTCTCAAAGGGGCGTGGAAACACATAAGAACTCTTGAATGGAAAAAAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCACAAGAAGAAGGGGTTGATCCGTATCATCTTGACTTGGTTCTGATTTCTCTATTTTATTAAGAATACCGAGCCGGGTTCTTCTCCTACCCGTATCGAATAGAACATGCCGAGACAAATCTTCTTCATGTAAAACCTACTTTATTTAGATCGGGAAAATCATACGGTTTTATGAAACCATGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTCTGATAGGAGCAGTTAACAATTGAATCCAAATTTTCCCATTCTTTTCGTATCCGTAATAGTGCGAAAAGAAGGCCCGACTCCAAGTTGTTCAAGAATAGTGGCGTTGAGTTTCTCGACCCTTTGCCTTAGGATTAGTCAGTTCTATTTCTCGATGGGAAGGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAGCCTGATTATCCCTAAACCCAATGTGAGTTTTTCTATTTTGACTTGACTTGCTTCCCCACCGGTCGTGATCGAATGAGAATGGATAAGAGGCTTGTGGGATTGACGTGAGGGGGTAGGGATGGCTATATTTCTTGGAGCGAACTCTAGGCGAATATGAAGCGCATGGATACAAGCCTTGGAATGAAAGACAATTCCGAATCAGCTTTGTCTACGAACAAGGAAGCTATAAGTAATGCAACTATGAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGCAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCCGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAG
scaffold80374	Ensembl_Plants	sense_intronic	28233	28311	.	-	.	ID=gene:ENSRNA049482553	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGAATGAGAGAAAGAAGTGAGGAATCCTCTTTTCGACTCTGAC	scaffold80374	Ensembl_Plants	LTR	26823	34284	58552	+	.	ID=2080233	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TTCAATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCACCAAGGCATCTTAAAAGTGAATCGTATTCCATGATATCTATCTAGTGTGATGTATGGAATATATGACAAAGGTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGGTTGGACAACCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATATATATTATATCAAAAAGATGGACAATCAAACCTATTTATCGATTCAATAGAAGCCCAAAGAGGTGAATAGGGTCCCAAATAACGAGAGATATATGTAATGGAAAAAGAAGATCCGATTACGCCTATTCCTAATCCTAAATGGAATGTAACGACGTAGGGATCCATATGTAAACATAGTATCTATTTAGATACGCTCGAATAGCCCCTCTCCTAATGAGAATGTATATAACCCTATTCTGGTCTGGTCCAGTATGGAATGAACTTATAATCATAGAATCGACTCGATCATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCCCATTTTGGGCGGAAGAGGTCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAGAAGCTAAAAAAGGGTATCCTGAGCCATTTCAATAATCGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAATCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAACAACGCTCGTAAGGAGTCCTATTGAAACCAAAAAATATAGGCCTGCCTGCCATCCACACCAGAATAAATGGAGTTTTCCGAAAAAACCTGCTAGTGGAGGAAGACCCCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCCGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCACCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCAATTTGACCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAATGAGATTCCCCAATATCATGCTAAGAATAGCTAGAATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAAAATTCGAGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACAACTGGAGTGGGAGAGTCAGAGTCGAAAAGAGGATTCCTCACTTCTTTCTCTCATTCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCATCTTCTTTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCGATTTCTAAAAAGGATTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTTGAATGACTGATTTTTCTCAATCTTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGATTGAGAAATAGAACCATCTGATTTGATTCGTTCTCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCGACGGATGCTCCTATTACACTCGTATTCTCTGAAGGATGAGAACCAATTATGTAGCATCTACATCGAGAATTCAAGTATTGTATACGTCATTAGTCCGATCCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGAATCCCTTTATGATAAAGGGATTCGTTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAGTAAAAGTTATGTCTTGGTCCGAGTGGGGATAGCATTTCTCTTCTGCATGTCCATGGAGTTTTGAAAAATCCAAACATCTCAGAGATAGATAGAGAGGTAGGAATTTATCGATAGCGAACGAACCGCACTCCTTCGTATACGTCAGGAGTCCATTGATGAGAAGGGGCTGGGGAAAGCTTGAACCCAATTCCTACAGTGATGAATATAAGCGCAATTGAAATTCCCGGGGAGTTATACATTTGTGTATTGATAAGACCATTCACTATTTCTTGAAGCTCGATCTCTCCCCCGGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGGAGCATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCGCCGCATAAAAACATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATCATAGGGTCTTCTCTCCATCGGAATAATAGGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGATGAAATATAACCAAGGTATATCTTTTTGATCTGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATAAAACTTCCATCGAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAATCCCAATTGTTTCGAACTTTCTCTTTTTTTTTTGGAATGGAATATTTAGGGAATCCCCATAAATAGGATCAAATCAAACCTTATTCCATGTATTTACATGAGATTCCTCTTTCTTATTCTTAAGCAAGTCCCCGAGAGGGCTTAGTTGATCTATGATTTATGTTTCATCTTTCGTTTCCTTTTCGTTTGTTTCGAGAAATAGATCGATCAATTCCGATTCTTTCTTTTTCTATTGATTCTTTTCCGATCGAGATGTATGGATCCATGAGTCTATGTGTCTATATGGATCCTGTTCATGGATTAACGAAAATGTGCAAAAGCTCTATTTGCCTCTGCCATTCTATGAGTCTCTTCTTTTTTGCGTATGGCATCGCCACTCCCTTTGGCAGCATCCACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGTTTTCGGGATGCCCCTAATAACCAACGAATGGCAAGTGCTTTTCCTTGTGTGGATCCTATTTCAATGGGAACTTGATGAGTCGATCCGCCTACACGTCTTGCTTTTACTGCTATATCGGGAGTTACTCCACGTATTGCTTGACGTAAAACAGATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCATGGCTCGATAGATAATTTGATAAGCCAATGATTTTTTTCCGTGTTTCAGAATACGGTTAACCAACATGTTAACTAATCGATTACGATAAATTGGATCGGATTTTGCAGTTTTTTCTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGGGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCATTTATTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTTCACAGAATTCTATATGTATCTATGAGATAGAGTACGGAATTCTGTTTACTCACTTTAAATTGAGTATCCCTTTCCCTCCTTTTCCTTCTAGGATTGGAAATCTTGTATTTTACATATCCATACGATTGAGTCCTTGGGTTTCCGAAATAGTGTAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTAAAAAAGTCGAGGCATTTCGAATTGTTTGTTGACACGGACAAAGTCAAGGAAAACTTCTGAAATTATTTCAATATTGGACCTTGGACATATAATAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCACACACTTTACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAACAATGTGATATCTCACACCGGGTAAATCCTTAACCCTCCCCCCTCTTACTAAGACTACAGAATGTTCTTGTGAATTATGGCCAATACCGGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTAATGGGATCCTTTTCCTCGTTCGAGAATCTCCTCCCTTCTTCCACTCCGTCCCGAAGAGTAATTAGGACCAATTCAGTCACGTTTTCATGTTCCAATTGAACACTTTCCTTTTTTGATTATTCTCAAAGGAGAAGATTATTCTTTTTACCAAACATATGCGGATCCAATCATGATCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCCCCTTGCCCCTCATTCTTCGAGAATCAGAAAGATCCTTTTAAAGTTTGAATTTGGGCTCTTCTACTTCATTTTTATTTCTTTTTTTATTATTTTTCCCTCTCTTTTTTTTATTCCCTTCCATCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGAATCTAACCCACTTTCTCATTGAGCGAAGGGTACGAAAAAAATCAGATGGATTTTTCGAGCAAAAGGACTATGTGAAATCTTCGGTTTTTTCCTCTTTCTCTATCCCTATCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTATATCTGTATGAATCAATATTATTACATTCCAATTCCTTCCCGGTACCTCCCAAGGAAAATCCCAAATTGGATCCCAAATTGACGGGTTAGTGTGAGCGTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATATGATCCGATCGATTGCGTAAAGCACGCGGTAGCAACGGAACCGAGGAAAGTATACAGAAAGTTCTTTTCTATTCTATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTACATTTTTTCTCTGTGGACCGAGGAGAAAGGGGACTCGGCGGGAAGAAGATTGTACCATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACACGGATTCTGGCAATGCAATGTAGTTGGATTCTCATATCGATCCGAATCAATCATCCTTTCCACGGAGGCAAATCTTTGTCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCTCGGTAGGACATACATGTATTTTATTTCTATTACTATGAAATTCATAAATGAAGTAGTTAAAGGCGGGGTTACCATTATTCTTTTTGTAGTGACGAATCTTGTATGTAGAAAAGGAATTTGTCCATTTTTTGGGGTCTCAAAGGGGCGTGGAAACACATAAGAACTCTTGAATGGAAAAAAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCACAAGAAGAAGGGGTTGATCCGTATCATCTTGACTTGGTTCTGATTTCTCTATTTTATTAAGAATACCGAGCCGGGTTCTTCTCCTACCCGTATCGAATAGAACATGCCGAGACAAATCTTCTTCATGTAAAACCTACTTTATTTAGATCGGGAAAATCATACGGTTTTATGAAACCATGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTCTGATAGGAGCAGTTAACAATTGAATCCAAATTTTCCCATTCTTTTCGTATCCGTAATAGTGCGAAAAGAAGGCCCGACTCCAAGTTGTTCAAGAATAGTGGCGTTGAGTTTCTCGACCCTTTGCCTTAGGATTAGTCAGTTCTATTTCTCGATGGGAAGGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAGCCTGATTATCCCTAAACCCAATGTGAGTTTTTCTATTTTGACTTGACTTGCTTCCCCACCGGTCGTGATCGAATGAGAATGGATAAGAGGCTTGTGGGATTGACGTGAGGGGGTAGGGATGGCTATATTTCTTGGAGCGAACTCTAGGCGAATATGAAGCGCATGGATACAAGCCTTGGAATGAAAGACAATTCCGAATCAGCTTTGTCTACGAACAAGGAAGCTATAAGTAATGCAACTATGAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGCAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCCGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAG
scaffold80374	Ensembl_Plants	sense_intronic	14713	14789	.	-	.	ID=gene:ENSRNA049482556	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCTGGATGAGAAGAAACTCTCATGTCCGGTTCTGTAATAGAGATGGAATTAACAAACAACCATCAACTATAAC	scaffold80374	Ensembl_Plants	LTR	14750	14791	256	+	.	ID=2080230	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=ACAGAACCGGACATGAGAGTTTCTTCTCATCCAGCTCCTCG
scaffold17504	Ensembl_Plants	sense_intronic	39389	39472	.	-	.	ID=gene:ENSRNA049482499	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	scaffold17504	Ensembl_Plants	LTR	38080	40357	18433	+	.	ID=2080074	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=AGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCCCTCCTCATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCGTATACGGAACGCCTGGAAATTATACTTGGAGCAGGAGATTCAATTAAGCGAGATTCGGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATTTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTTAAGTAATGAGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATA
scaffold165368	Ensembl_Plants	sense_intronic	1609	1685	.	-	.	ID=gene:ENSRNA049482406	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold165368	Ensembl_Plants	LTR	1018	2066	7200	+	.	ID=2080228	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGT
scaffold106582	Ensembl_Plants	sense_intronic	31187	31265	.	+	.	ID=gene:ENSRNA049482140	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGTCGTGTGAGATGAAAGTCTCATGCACGGTTTTGCATGGGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	scaffold106582	Ensembl_Plants	LTR	29931	32542	19113	-	.	ID=2080227	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTTCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGTGTGGCTAAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAATGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCCCATGCAAAACCGTGCATGAGACTTTCATCTCACACGACTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTGATTACCTTCCTCGCGTATGTATAAGGCCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCAAACTCCTTCGTAGACATCAGGAGTCCATTGATGAAAAGGAGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCATTATGCTTATTACTAAACTTGTTGAAGAGATGAAATATAACCAAGGTCTATCTTTTTGTCCAG
scaffold47324	Ensembl_Plants	sense_intronic	4519	4611	.	-	.	ID=gene:ENSRNA049481914	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGGGGCTCGTGTCCTTCGGTGGCGTGCATGGTACGCACATTAGGCAACCCCAT	scaffold47324	Ensembl_Plants	DNA/En-Spm	4323	4569	1908	-	.	ID=929379	repeat_name=DTC_Jorge_3B_034_E06-2	repeat_type=Type II Transposons	sequence=GGGCTCGTGTCCTTCGGTGGCGTGCATGGTACGCACATTAGGCAACCCCATTACCCCAACTAGTCGAGCCTCAGTGTTTCAAGTCGAAATATCTGGCGGCCAGAATTCCAGCCCTAGGAAATTCCCCTCATGTCCCCGGTCCATAATGACTATCGATGAACAACAGATGGATGCTTTAGTAACTAGACAACGTCACCTACCGTGCCGAGCACGGTTCAATTCCCTCGGTCGCCGCTCGTCAAGGTC
scaffold47324	Ensembl_Plants	sense_intronic	4519	4611	.	-	.	ID=gene:ENSRNA049481914	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGGGGCTCGTGTCCTTCGGTGGCGTGCATGGTACGCACATTAGGCAACCCCAT	scaffold47324	Ensembl_Plants	LTR/Gypsy	4554	4732	1300	+	.	ID=2243550	repeat_name=RLG_Gk_DX403759.1_7620	repeat_type=LTRs	sequence=GAAGGACACGAGCCCCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCACATCCAT
scaffold285665	Ensembl_Plants	sense_intronic	1027	1244	.	-	.	ID=gene:ENSRNA049481782	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=ATACCAACATCTTTTCTGATTTTTTGGTCACCCAGAGGTTAAATTTGTAGGCCTCTTAACGTTGCTGTATGCTGGGACCACTTCGTTACAAAGTTTTAAATACTCCATCGAACACGACATAGTGAAAAAGTTAAAACAAAGAAGTAAATCAGCAGGTAACATTTCATTGTTCAAAGCAATTGCAAGAAATGGAACCTCAGAGACTCTACGCAACGGAG	scaffold285665	Ensembl_Plants	DNA/En-Spm	1211	1319	487	+	.	ID=2221894	repeat_name=DTC_unnamedfam25_3B_058_I14-1	repeat_type=Type II Transposons	sequence=GGGTGACCAAAAAATCAGAAAAGATGTTGGTATAATATTGGATCTCCACCTCCTGCTACTTCGAAGAAAGATGTATTAAAGTTTCTGTCTGTTAATACCATTGTTATT
scaffold46877	Ensembl_Plants	sense_intronic	11708	11781	.	-	.	ID=gene:ENSRNA049481737	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGGGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	scaffold46877	Ensembl_Plants	LTR	11486	12494	8016	+	.	ID=2080261	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=ATGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTTTTTTTTCTGCAATACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGTTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCCCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGA
scaffold66810	Ensembl_Plants	sense_intronic	5989	6052	.	-	.	ID=gene:ENSRNA049481653	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGAC	scaffold66810	Ensembl_Plants	LTR	1	9488	70954	-	.	ID=2080030	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=GTTGATTTTACTCTATTTATCCTGTAGTTTAATTCAGTTTTAATTTTGATGTATTTTGTAATGTAAATACAATGAAATTAATTGTGTAAAATGAAATTTCAATAAAAATAACAAAAGGAGTCTTCATGTCCCGTTATCAAGGACCTCGTTTAAAAAAATACGCCATCTGGGAGCTTTACCAGGACTCACTAGAAAAACACCTAAATCCGGAATTAATCTTAAAAAAAATTCAATTGTGGGAAAAAGGAGCAATATCATATTCGTCTTCAAGAAAAACAAAAATTGCATTTTCATATGGTGTGACAGAATGACAATTACTTAGATATTTACATATCGCTGGAAAAGAAAAAAGGTCAACAGGCCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAATATCCTTTTTCGATTGGGTATGGCTTCAACCATTCCCGGGGCCCGCCAATTAGTCAACCATAGACATATTTTAATTAATGTTCATATAGTCAATATACCATGTTTTCGTTGCAAACCCCGAGATATTATTACTACGAAAGATAACCAAAGATAAAAAGGTCTGGTTCAAAATTATATTGCTTCATCGGACCCGGGGAAATTGCCAAAGCATTTGGCGATTGACACGTTGGAATATAAAGGACTAGTAAATAAAATCCTAGATAGGAAGTGGGTCGGTCTCAAAATAAATGAGTTGTTAGTTGTAGAATATTACTCTCGTCAGACTTGAACTTAACGAAAAAAGGAAAGGTTCATAGAATTTTCTTCCCCTTCCCCTTTCCTAGAACTAAATCGCCCTAAGACCATTACCATTAATTTGTATTTTCCCATCAACTAGCTAAAATTGATTAACCCTAGGATTAGGATCCTTTTTTCTTTTTTCCTCTATGTGTATTTTACATACCACGGTAATTTGCTATAGAGAATTTCTAATTTCTATTAAATCGAAATAATATAATATAAGATATTATATTATTGGTGGAAAATATTGTTATTTGATTTGATACATTGTGATCCTTAACGTTGATGAATTAAGAAAAACGGAAAGAGAGGGATTCGAACCCTCGGTAAACAAAAGTCTACATAGCAGTTCCAATGCTACGCCTTGAACCGCTCGGCCATCTCTCCTACATAACTTATTATGGAAAATAAACTGAGTGAATAGCGAGTTTTCTTATTCCTGCAGTACAGGTACAACCGCAACCACTCGGGGGTTCCATAGTTCTATTGGAAAAATTCCTTTTGATCTAAGTGGAAGGATACAGGATTTTTTACTAGAAATTGCGCTCGCTATAAAATAAAAGTTTTAATTTGGGTTTTCCCGCAACTAAAGAAAAAGAAAATGGAAGAATTCTTCTTATTGCATAATAAAATAAAGAAACCTTAGAATTCCGTTTGCATAAGATACGCTACACCATACTATCGAAATCAAAAATAGGGTATGAGACAATTAATAACTTTGAAAACACGAAATAGTTTAACATAAGTTGTTGTTCAGAAATAGGAAAGCAGAATGAAATCCAGTCTTAGTCAAATATTTCATATCTCTTCTTATCCATTTAAACATATGGATTTATAGTAGAGCATATGGATCAATCTATTTATAATTATAAGAATCGTATGTGTTTGTTTTTATGTTATTTTGTGAAGAAATTAAAACAATTCTATATAGAATGGGTTGGGAATTATGCCTAGATCCTATGTAAATGGAAATTTCATTGATAAGACCTCCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCAGGAGAAAAAAGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTTGCTTTTTTAGCCCTACCTATATCTCAGTCTTACGAAAAAGAGAGGGGGTTGGCATAGAGAGAACCAAATTTGTAAACCAAACAAACCCATGCTTCGGGAAGGTGACGCGAATTAACAATTCCTTCTGTCGTGTATCCTCGATTGATGCGGCTTCAGATACTTCAATTGTAGATTTGAGTATTGAGCGAAAGGTTACACCTACAGGATATGGTATGGTATGGATTACAGGCCAATCCTACTCTATTAGTATTCGTAGGCAGCATAGGGGAGAAAAGCACTACACCTAGAAATAGGAATCAAAAAGAGAAAAACTTTGTTAGAAATTACCCCTTTCCTGATCGGTATCAGGGCTGGGAAGAATGGCTGGGATAACAAACAACCATCAGGTTTGTACTTTGGATACCCCTATAACCATCAAAGATCGTTGAAGTAGCTAATTCCTCTAAATAGGAGGCGTTGAGAACAAAGAAATTATTGGAGCTATCGTTTTCCTCTAGCATTAAAAGAATTCATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTTGGAAAAATACCAGCCCCTTTTGGTTCATAATGAGACGGGACTAATTCTATTTTGATGCTATAGATTATTTCGCTTAGTACTATTATGTACAGAAGGGAGGAGCCGTATGGGATGAAAACCTCATGTACAATTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAACGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACACGACTAGAAATCGATCCCTATGATCAAATTTATGTACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATATAAAGGCTTTGGAATATTATTTCCGGGCAATAGAACGGGACCCCTTCTTACCGCTAGCTATTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAAAAAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAGGGCTTTCTACATAGGGATCGTAAAAACAACGATTTTCCCTATCAGTTGTAGGAAGGAAGGACACTTCACGAGAATCAAAAAACGAAGAAAGTATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATAAAACTAAAAAAACTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTTCCTTTTTCTTTCTTATGGGAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATCAAACCGGGATAGTTACCTTTCAGAAAATTTGAACGAAGCCTCTATATCTATCTATACTTCATTCTTCTGAAGGCGGGAAAAAACAAACTGATTATTGATAAAAAAATTAGGGTTTGAAACTTAGGTAATTTATTTCTTCTGCTTAAACCAAGAAGAAATTGGATCAATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCGGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATTTGAATAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCTAATAAATTAGGTCGTAAGATCGAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTTATATGATATTTCATAAGAGTAAACCATAGGGATAGGGTCTAGAATAGAAGTAATAAAGTGAATAAAAGAGTGGGCAATCTAAATATTGCTAATATATTATGACCATCTTATTAATAATTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGCAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAATACACTAGTTTCTGAAATTAAAAATAAAAAAGATTTTTTTTCTTACATCGAGAAATATTTGTTTTTCAAGATAAACAATGTCTGTTAGGCACCTAATCTTTATGTCATAATGACCCAAACTCTTGCCTCGGATTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAAATAGAAGGATGGTAGATAGTAAAGAAAAGAACTAATCACAATATCTATCTTTCGAAATCTATCTTTCAAAATATATATCTTTCAAAGATTCACTAGAAAGACAGTTGGCGAATCTCTTTCTATGTCTTGTCCGGAAAGAGGAGGACTTAATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTGTTGTGGATAGGGATCCTGTAAAAACATCTTTTGAGGAATGGGCTAGACCTGGCCATTTCTCAAGAACACTAGCTAAGGGCCCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGTCATACTGGTGATTTGGAGGAGATTTCTCGAAAAGTCTTTAGTGCTCATTTCGGGCAACTTTCCATTATCTTTCTTTGGTTGAGTGGCATGTACTTTCATGGCGCCCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTCACATTGGACCTAGTGCTAAGGTAGTTTGGCCTATAGTAGGGCAAGAAATATTGAATGGTGATGTAGGAGGGGGTTTCCGAGGAATCCAAATAACCTTTGGTTTTTCACCTCTGGTTTTTTTCAGCTTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTCTATTGTACTGCAATTGGTGCATTGATTTTTGCAGCGTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCCGCTCCCAAATTGGCCTGGTTCCAAGATGTAGAATCCATGTTGAATCACCACTTAGCGGGATTATTAGGACTTGGGTCTCTTTCTTGGGCGGGGCACCAAATTCATGTATCTTTACCAATTAACCAATTTCTTGACGCTGGGGTGGATCCTAAAGAGATACCACTTCCTCATGAATTTATCTTGAATCGGGACCTTTTGGCTCAACTTTATCCTAGTTTTGCCGAAGGAGCAACCCCTTTTTTCACTTTAAATTGGTCCAAATACGCAGAATCTCTGACTTTTCGCGGAGGACTAGATCCAGTAACCGGTGGTGTCTGGCTGACCGATATTGCGCACCATCATTTAGCTATTACTATTCTTTTCCTAATCGCATGTCATATGTATAGGACCAATTGGGGTATTGGCCATGGACTTAAAGATATTTTGGAGGCTCACAAGGGCCCATTTACAGGACAAGGCCATAAGGGTCTTTATTAAATATTAACAATGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTATTCTATGCCTCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACAGACCAGATGTGGATTGGCGGATTTCTAATAGTCGGTGCTGCTGCACATGCAGCAATTTTTATGGTAAGAGACTATGATCCAACTACTCGAGAAAACGATCTATTAGATCGCGTCCTTAGACACCGCGATGCAATCATATCCCACCTTAACTAGGTATATATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATGATACCATGAGTGCTTTAGGCCATCCACAAGATATGTTTTCGGATACTGCCATACAATTACAACCTATCTTTGCTCAATGGGTACAAAATATCCATGCTACTGCACCTGGCATAATAGCTCATGGTGCAACAACAAGTACTAGCTTAACGTGGGGAGGCGGTGAGTTAGTAGCAGTAGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTAGTCCATCACATTCATGCATTTACCATACATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGGAGTTCCCGTTTGATACCCGATAAAGCAAATCTAGGTTTTCGCTTTCCTTGCGATGGGCCTGGCCGAGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTTTATTCTGGATGTACAATGCAATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAATCAAATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATTATAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTTCGAGATTTCTTGTGGGCACAGGCATCGCAAGTCATTCAGTCTTATGGTTCTTCATTATCTGCATATGGTCTCTTTTTCTTAGGTGCTCATATTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGACTGTGGTTATTGGAAAGAACTCATTGAATCTATCATTTGGGCTCATAACAAACTAAAAGTTGCTCCTACTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGCGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACGACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGTGCTGCTGGTCCAGTGAATATTGCTTATTCTGGAGTTTATCAGTGGTGGTTTACAATAGGATTACGCACCAATGAGGATCTTTATACTGGAGCTCTTTTTCTATTATTTCTTTCTACGTTGTCCTTAATAGCGGGTTGGTTACATCTACAACCCAAATGGAAACCAAGCCTTTCGTGGTTTATAAACACGGAATGTCGTCGCAATCATCATTTGTCAGGACTTTTCGGGGTAAGTTCTTTCGCTTGGACATGACATTTAGTTCATGTTGCTATTCCCGCATCCAGGGGGAGTACGTTCGATGGAATAATTTCTTAGATGTATTACCCTATCCCCAGGGGTTGGGACCCCTTTTGATGGTTCAATGGAATCTTTATGCCCAAAACCCTGATTCGAGTAATCATTTATTTGGTACCGCTTAAGGAGCGGGAACTGCCATTCTAACTCTTCTTGGGGGATTCCATCCACAAACACAAAGTTTGTGGCTGACCGATATGGCTCACCATCATTTAGCTTTTGCATTTCTTTTTCTCATTGCTGGTCACATGTATCGAACTAACTTCGGAATTGGGCACAGTATTAAAGATCTTTTAGAAGGCATACTCCTCCGGGGGGTCGATTAGGGCGTGGGCATAAGGGCCTTTATGACACAATCAACAATTCGATTCATTTTCAGTTAGGTCTTGCTCTAGCTTCTTTAGGGGTTATTACTTCCTTAGTAGCTCAACATATGTACTCTTTACCTCCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCACCAATATATTGCAGGGTTCATCATGACAGGGGCTTTTGCTCATGGAGCTATTTTTTTCATTAGGGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCTAGCCTCTTTCTAGGATTCCATACCTTGGGCCTTTATGTTCATAATGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTAATCGAACCTATATTTGCCCAATGGATGCAATCTGCTCATGGCAAGACGACATATGGGTTTGATATACTCTTATCTTCAACGAATGGGCCCGCTTTCAATGCGGGTCGAAGCCTATGGTTGCCCGGATGGTTGAATGTTGTTAATGAGAATAGTAATTCACTTTTCTTAACAATAGGACCTGGGGATTTCTTGGTTCATCATGCTATTGCTCTAGGTTTGCATACAACTACATTCATTTTAGTAAAGGGTGCTTTAGATGCACGCGGTTCCAAATTAATGCCAGATAAAAAGGATTTTGGAAATAGTTTTCCTTGTGACGGCCAAGGGCACGAGGTACTTGTGATATTTCTGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACTTTTTATTGGCATTGGAAACATATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTATCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTAGCTAATTTAATTCGCTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGCTCACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTCTTGATTGCCTCAACATCAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTTGTACTGTATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTACCTTTTTAAATTTCTTTTTCTATTTATTTTTCCATCTAGGATTAGAACCGTATACTTGGCAATAATAGCAACGACACATTATGGAAAAAAAAAGTTTGATTCAGAGGGAGAAGAAGCGGCAGAAATTAGAACAGAAATATCATTTGATTCATCAATCTTTAAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAAATGAAAATGCGAGAAAAATTGCAATCCCTACTGCGTAATAGTGCACCTACACGCCTTCATTGATGTTGTTTTTTGACCGAAAGACCTAGAGCTAACTATCGACATTTTGGGCTATCCGGACACGTACTTCGAGAAATGGTTTATGAGTGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCTTTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTGTATAAATGGACCATTCTATTTGTATAGATATTGGTAGAGGGGCATATCCAACCCTCTTTTATCCACTAGTTACCCATCTTTAGTTAAAGAGTATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTGGGGTTGCGGGTTCGATTC
scaffold114754	Ensembl_Plants	sense_intronic	27384	27460	.	+	.	ID=gene:ENSRNA049481618	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold114754	Ensembl_Plants	LTR	26906	27639	3636	-	.	ID=2080241	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GAACTGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTCTCATCTTACCTGGAAATGGAAATAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAAT
scaffold95777	Ensembl_Plants	sense_intronic	2401	2463	.	-	.	ID=gene:ENSRNA049481510	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAGAAGTATCGCTGTTTCATTTCGC	scaffold95777	Ensembl_Plants	LTR	2422	2815	1387	+	.	ID=2080251	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=CTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATTCGTTTCCTCGTTCGAGAGTCTCCACCCTGAAGACTAACTAAGACCAACTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCGATGTAATCATAATTGAACACTTGCCATTTATCATCATATGATTAAAGAATAAGATTGTTCTTTTACCAAGCAAATGCAGACTAAATCGTTTCTTATAATAAGAAGAAATCTTGCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCGGAATGATCCTTTTCGAGTTTTCATTGCCTCATTTGGAATCTGGTCTCTTCTATCTCTGACTTAATTATTTTGGCTTGATTCTTTATTTATTT
scaffold62964	Ensembl_Plants	sense_intronic	377	453	.	+	.	ID=gene:ENSRNA049480705	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold62964	Ensembl_Plants	LTR	6	534	3020	-	.	ID=2080283	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGTTGTTTTGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTTGACTTAAATTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCT
scaffold17762	Ensembl_Plants	sense_intronic	1408	1490	.	-	.	ID=gene:ENSRNA049480763	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAATGGTTCATGTTTGGTTCAGGAAGAGATCATAAAAGTTGTAAACTTACAAAATATCTACTTTCAT	scaffold17762	Ensembl_Plants	LTR	247	1614	10834	+	.	ID=2080123	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ACTACAATAGTGTATTCCATGGCCGCCTCCTCATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACTGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCGTATACGGAACGCCTGGAAATTATACTTGGAGCAGGAGATTCAATTAAGCGAGATTCGGAAGCTATAATTTCGCCTTTCCCATCAATTGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCCTCATTCACGGGTATCTAAGCAATTCTTCCTGTTGCTTTTACAAAACTTCATCAACCCATCGCCCATTAATACAATCCCAACATTTTGGATTCCAAATTCAGAGAAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACGTGACATTATTTCACCAAGACCTATAATACGAGAAATCCCATCCCCCACTTGAATTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATATGTTCCCGGAGGATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAAACTAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCATACGGAAATGTAATTTGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTATTGGAAAACCCGATGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTAAGACTTTTCCAATTGTTCCAAACTAATAGAAATACCATTAATCAAATTTGCTTTTTTTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCTGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTATGAATTTCGAATAGTACTCAAGATCCTTTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATATTTTGTAAGTTTACAACTTTTATGATCTCTTCCTGAACCAAACATGAACCATTCGATTCATTTGGCTCTCACGCTCCTTTTTTCTATAGCTATTTCCATATTTTTTAAGTAATGAGCCTACCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAGGACTAGATAAATTGATGAGGAC
C163240052	Ensembl_Plants	sense_intronic	77	131	.	-	.	ID=gene:ENSRNA049480839	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACAGCTTGGAGGGAGATCTTTCCTAT	C163240052	Ensembl_Plants	LTR	66	145	605	+	.	ID=2080281	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=ATCTCGAAACATAGGAAAGATCTCCCTCCAAGCTGTACATACGACTTTCATCGAATACGGCTTTCCACAAAATTCTATA
scaffold66293	Ensembl_Plants	sense_intronic	811	884	.	-	.	ID=gene:ENSRNA049480627	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCAGTATTCGATGAAAGTCGTATGTATGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	scaffold66293	Ensembl_Plants	LTR/Gypsy	640	933	2306	+	.	ID=2243553	repeat_name=RLG_Gk_DX403759.1_7620	repeat_type=LTRs	sequence=TATGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTTTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCTATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCATACATACGACTTTCATCGAATACTGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGTACTTCTGTTTAC
scaffold51505	Ensembl_Plants	sense_intronic	14254	14337	.	+	.	ID=gene:ENSRNA049480455	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	scaffold51505	Ensembl_Plants	LTR	12731	15168	18734	-	.	ID=2080033	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=AGCATTTACAACACGACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATTTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTTAAGTAATGAGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTAAACTAAGGACGGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATGGGGTATTATCTGTCCCGATAAATAGATAATTCCAGGAGTAATAAATAGGAGTAAATTAAATAAAGTATTGATATAATTGGAATTGTGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCGAAAGAATTTTTTTTTTAAGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATA
scaffold57091	Ensembl_Plants	sense_intronic	15479	15555	.	-	.	ID=gene:ENSRNA049480400	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold57091	Ensembl_Plants	LTR	13448	16325	17910	+	.	ID=2080240	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCATTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGT
scaffold57091	Ensembl_Plants	sense_intronic	14708	14781	.	-	.	ID=gene:ENSRNA049480397	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	scaffold57091	Ensembl_Plants	LTR	13448	16325	17910	+	.	ID=2080240	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCATTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGT
scaffold60970	Ensembl_Plants	sense_intronic	7330	7409	.	+	.	ID=gene:ENSRNA049480362	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AAGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGACATAAGCGAGGAATCCTCTTTTTGACTCCGAGT	scaffold60970	Ensembl_Plants	LTR	6444	8024	11720	-	.	ID=2080244	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GGGGGGGTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCATAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAAGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTACATAATCTCGAATGATATCAGTTCCGGTTCGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAACATATAAGTTATAATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATTCGATTTTCCCTATGGATGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGAAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCAAGAATTTGCGTGGCCGAAGCTAAAGCAGCTACTTTCAAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGACTCGGAGTCAAAAAGAGGATTCCTCGCTTATGTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCTTAAGTGGTAAAAGAAAGAAGAACTCGTCTTCTCTCTTTGATTACCTTCTTCGCATATGTATAAGACCGAATCCATTCTTTTTCAAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTACTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATTGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGAAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAACATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAACGCAATTGAAATTCTAGGGGAGTTATACATTTGTGTATTGATAAAAACATTCACAATTTCTTGAAGCTCGATCTCCCCCCAGATGAACCATATAGCCAAGAGAAACCAAGAACTAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCAT
scaffold13638	Ensembl_Plants	sense_intronic	47655	47802	.	+	.	ID=gene:ENSRNA049480233	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATTGATGAGGACATGACTACCTTGGATACGACCAAAAATATTGCATACATGCATATTTGTCAGGTGATTTCTAGTGCAAACTATTCAAT	scaffold13638	Ensembl_Plants	LTR	44629	47683	21118	-	.	ID=2080222	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTTGACATAGAAGAGCGAATCCATTCTTTTTCGAAATCGATTTTGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACAAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGATCCTGACCCTACTTCACCTTAATTGTTATTTGAACAAAAAGATCACAACAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTACATGTCTATGGATTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAGTTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAACTCGATCTCCTCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCAACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCATACAATAGGTAGGAACATAAACTGAAACACTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTAAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATATACTCTATGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCATTGAAATTGTTCATTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACGTGTTGAAGAGATGAAATAGAACCAAGGTCTATGTTTTTGATCAGAGGTTGAATCGATCATCAGAAGGAGAATTAGGCCAAAAATTAGGATACATTCTAGGAAAATGAAACTACCATTGAAGAGAAGCAAATGAAACACTTCCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAGTCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTATTTCTTATTCTAAAGCAAGCCCTCAAGAGGGCTTACTTGATCATGATTTCTGTTTTCTCTTTCTTTTCATTTTTGTTTGTTTCCAGAAATATATCGTCCGACTCTCCTTTTATTGATTCTTTTCCGATCGAGATGTATGGATCCATGTGTCTACATACATAGATTATGTTCATGGATTAATGAAAATGTGCAAGAGCTCTATTTGCCATTGCCATTCTATGAGTCACTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGTAGCATCTACTAATTAGGAACTTAATTTGAAAGCCATATTTCAACCCGGGCGCTGTTGGAATGCTTGTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTGTTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTATGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTATCTTTTGTTGAATCTTTTTCACCGCTGGATAGAGAATTTGATAAGCCAATGATTTTTCCGTCTTTCATAATACGGTTAACCACCAGGTTAACTAATCGATTATGAAAAATTGGATCAGATTTTGTAGTTCTTTTTTCTGTAGTACCTCGACGTGATATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTATTTTTATACGGGCTAAAATCACTTATTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATATGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTATGTTTGCTCACATTAAATTGAGTATCCATTTCCCTCCTTTTCCTGCTAGGATCGCAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGATATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTGGAGGTATTTCGAATTGTTTGTTGACAGGGACAAAGTAAGGGAAAACCTCTGGAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTATGCTCTAGTCCCTTTACGGAACTTCCGTTATTGGGTCCTTCTCCTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAATGCACTAGAACGCCCTTGTTGATGATTCTTTACTGCGACTGCATCCAGCTCGAATAATGCGATATCTCACACCGAGTTCAAAGATACTTAAACCTTCCTCCTCTTACTAATACTACAAAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTGATTTCAAATCCAGAAGTGAATCGTACTAATTTCCTTTACGTAAGGAAGAGTTGGGTTTTTGGGCTTGATAGTGGAAAAGTTGACAGAGAA
scaffold13638	Ensembl_Plants	sense_intronic	47655	47802	.	+	.	ID=gene:ENSRNA049480233	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATTGATGAGGACATGACTACCTTGGATACGACCAAAAATATTGCATACATGCATATTTGTCAGGTGATTTCTAGTGCAAACTATTCAAT	scaffold13638	Ensembl_Plants	LTR/Gypsy	47684	49783	14910	+	.	ID=1987772	repeat_name=trep4230	repeat_type=LTRs	sequence=CGGTTTTGCATGAGAGAAAGAAGCGAGGAATTGATGAGGACATGACTACCTTGGATACGACCAAAAATATTGCATACATGCATATTTGTCAGGTGATTTCTAGTGCAAACTATTCAATAATCTATTTATGTTATCCAGAACAAAAATACTTCACACACTTTTGTGTTTTGTCTAATTGCAGGTGTATGGGACATTTGTACAATCCACATATGAAGATAAGGGAAAATGAGAAGTTTAGGTTCTGTTCAAAAGGTCCTCTCACGTCACTTTTGGGGCAAGAGAAGATAGAGTCCAAGTCTCTCATGTTTTGGATTCAAATTCGGACTGCATAGACATACCTGAATCAAAACGTCAACAACTTTTTCATACGCACTCCGAATTGGGTGATTCTTTTTTTGTTAGAAAGTAGATTTCGTGGTCTTTTCAAGACAATTGGATTCACCTTCAAATTCGTCTGGAGCGTTGAGATATCGACGAAACAATCTGACGTTGCAGCAGAATCCGAGTCAAAGAACAAGTCCAAAGGTGTTGCATCACCTCCACTTGGGCCCATGAGCCTTGTATGACCTAGGGTTAGTTTTAGGCTGCCTTGGGACGTCCTCCCACCTCCTTGGCCGCCACCCCTTGCTCCTATATAAGTAGATCCATCTAGTAGTTTTTTCCCTCGGTTTTGTTTAGATTAAAAGTTTGCCATAGCTGCAACTTCACGTACTTCGTTTGTGTCCAACGACCAGACCAAGATGTCACAGAACCCCACCTTCATCAATAAAGCTTTCCTCTTTAATTTGCAATCTCAATTTCTTGTTTGTTCTTTGTTTGCTCGCAGGAAACGGACCCTCGCGGTCAGGTTGATCGTGCTCCGGCGTGGTCAATAACCCTCGGAAGTTGGTTTAGCGATTGCTAAGGCGCGACGTCTTCGCACGTTCGTAGTCGGATCGTCAAAGTCGACTCCCACAGAAAACGATATCTATCTCATCGAAACATCGGGACACCTTCGCCTCTATCAAGTGGTATCAGTTTTCAGGTTGCTCGGTGAGAATTTCCAGTTTTCCTAGATTAGATTTATTTTCTTACCTATTGTCCAAGAAAAAGCCACAAAAAAGCTAGATTTATTCATCCTTTGTCCAAGCCAGTCTGAGCCTTTGCAATTTTCTTTTCATTGCTTGCATAGTTGAATTATCGGTTGCATCGTCGTGTCGAGTTGCTGTTCTTAGTGTCTAGTTCGTTTAGAGTTTCGAGTTCTGTTCACATTAGTCACGTCGCCGCTGCACCATTATCCCTTCCGCTGTCCACCACCCATCCATCCATTTCCACCACGTGCTACCCATTGTTCATTGTCACAATCATAGTTGAGGTCATTCACATCTTTGCTAGATCCAATCTGCATCTTATCTAGTTTGTTTTGAAATAGCGAGAGAGAGAAAAAAGAGCAAGAAAAAAAACAAAAGAGAAAAAACTAAAAAAAGTCAAGAAAAAAAGAGAGAAAGAAAAAGAAAGAAAAGTGTGAGGAAAAAAAGAGAAGAAAAAAAACAAATTCGGATCTATCTAGACTCAATCTCGTAGTTGAGTTCGGATTAGAATCTGTTTTATGCACTGTTTAGTAAAACAGGCATAACTTCCTCATACGAAGTCCGTTTTGGCTCCGTGAGTACTCGAATGAAAGCTAGCAATGAGCCGCATCCAAATAGTTGCATAAGTTAGTTCAATATTTGGCACCTCAAAATCGGCTTTTAAATAGGTCTTTTTGCCCTCCAAAGTTCATGAACACATCTTATTCCAGTTTTTCAGGCCAGTTTTAGAATTTTTTGACTCCTCATATCAACTCGGAATTGAGTGATTCCTTTTGCGTTTGAAAGCTTGAGTCAATACAATTGTTGAAATATAAATTATCAAAAAATTGACACAAAATTTTCCAGAGGAAAGTTGGAGAGAAAGTTGTTGTATATCCTGCTTGGCAGTTGTTTTTCATCATTATCTTTACTGCCGTTGTGATCTTGACTTATATCTTGCTGTCCAGAGCTACTTAGTATCCTTCATTGATGCTAGTTGTGCTACGCCGTGATCTCATTAGTGTTCTAGGCTCGCATCTCTAGTCCGGT
scaffold13638	Ensembl_Plants	sense_intronic	45325	45398	.	+	.	ID=gene:ENSRNA049480228	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCATATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	scaffold13638	Ensembl_Plants	LTR	44629	47683	21118	-	.	ID=2080222	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTTGACATAGAAGAGCGAATCCATTCTTTTTCGAAATCGATTTTGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACAAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGATCCTGACCCTACTTCACCTTAATTGTTATTTGAACAAAAAGATCACAACAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTACATGTCTATGGATTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAGTTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAACTCGATCTCCTCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCAACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCATACAATAGGTAGGAACATAAACTGAAACACTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTAAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATATACTCTATGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCATTGAAATTGTTCATTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACGTGTTGAAGAGATGAAATAGAACCAAGGTCTATGTTTTTGATCAGAGGTTGAATCGATCATCAGAAGGAGAATTAGGCCAAAAATTAGGATACATTCTAGGAAAATGAAACTACCATTGAAGAGAAGCAAATGAAACACTTCCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAGTCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTATTTCTTATTCTAAAGCAAGCCCTCAAGAGGGCTTACTTGATCATGATTTCTGTTTTCTCTTTCTTTTCATTTTTGTTTGTTTCCAGAAATATATCGTCCGACTCTCCTTTTATTGATTCTTTTCCGATCGAGATGTATGGATCCATGTGTCTACATACATAGATTATGTTCATGGATTAATGAAAATGTGCAAGAGCTCTATTTGCCATTGCCATTCTATGAGTCACTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGTAGCATCTACTAATTAGGAACTTAATTTGAAAGCCATATTTCAACCCGGGCGCTGTTGGAATGCTTGTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTGTTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTATGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTATCTTTTGTTGAATCTTTTTCACCGCTGGATAGAGAATTTGATAAGCCAATGATTTTTCCGTCTTTCATAATACGGTTAACCACCAGGTTAACTAATCGATTATGAAAAATTGGATCAGATTTTGTAGTTCTTTTTTCTGTAGTACCTCGACGTGATATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTATTTTTATACGGGCTAAAATCACTTATTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATATGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTATGTTTGCTCACATTAAATTGAGTATCCATTTCCCTCCTTTTCCTGCTAGGATCGCAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGATATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTGGAGGTATTTCGAATTGTTTGTTGACAGGGACAAAGTAAGGGAAAACCTCTGGAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTATGCTCTAGTCCCTTTACGGAACTTCCGTTATTGGGTCCTTCTCCTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAATGCACTAGAACGCCCTTGTTGATGATTCTTTACTGCGACTGCATCCAGCTCGAATAATGCGATATCTCACACCGAGTTCAAAGATACTTAAACCTTCCTCCTCTTACTAATACTACAAAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTGATTTCAAATCCAGAAGTGAATCGTACTAATTTCCTTTACGTAAGGAAGAGTTGGGTTTTTGGGCTTGATAGTGGAAAAGTTGACAGAGAA
scaffold308820	Ensembl_Plants	sense_intronic	455	525	.	-	.	ID=gene:ENSRNA049480001	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CGGAGCCGTATGAGGCGAGAGTCTCACGTACGGTTCCTTTGAGAAGGGTGTGATACCACCACCTATCAGGC	scaffold308820	Ensembl_Plants	LTR	490	524	239	+	.	ID=2080316	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AACCGTACGTGAGACTCTCGCCTCATACGGCTCC
scaffold308820	Ensembl_Plants	sense_intronic	455	525	.	-	.	ID=gene:ENSRNA049480001	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CGGAGCCGTATGAGGCGAGAGTCTCACGTACGGTTCCTTTGAGAAGGGTGTGATACCACCACCTATCAGGC	scaffold308820	Ensembl_Plants	Retroelement	491	531	227	+	.	ID=2080363	repeat_name=RXX_Gk_DX403548.1_7560	repeat_type=Unknown	sequence=ACCGTACGTGAGACTCTCGCCTCATACGGCTCCGTCCTGG
scaffold60627	Ensembl_Plants	sense_intronic	379	462	.	-	.	ID=gene:ENSRNA049473417	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	scaffold60627	Ensembl_Plants	LTR	1	1961	14426	+	.	ID=2080017	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=GCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCTTAGAGCTCCTTGTACGGGCTAATGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAGAGGGTTTCATTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCTTTCATTCGATACTCATCCGCTTCTAGTTTGACTATCTGTAATCAAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTTTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTAAGTAATTAGCCTATCCTCTAACTTATTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCGGCAAAGTTGTTTCTTTATTTTTATTTGACATCTAGTTAATAATTTCAATTTCATTAAGAAAAAGTAACTAAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTCTTCAAATCCAAAAATTTTCTCTTTTTTATACATAGGTCATCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTGTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAGCAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTAAACTAAGGACGGGAAATAAGAAGGTGATCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATGGGCTGAGTAATAGATAATTCCAGGAGTAATAAATAGGAGTAAATTAAATAAAGTATTGATATAATTGGAATTGCGGAAGCAAATAAAAATTTACTAAAAAAAGAAAAAAGTACCTAATCGAAATCGAAAGTTTTTTTTAAGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCATAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTCACTGTCTCGCAATACCTTCTACAGCTTGTCCTACAGTAGTACCTTGACCAACTCCAGGTCCAATAG
scaffold60627	Ensembl_Plants	sense_intronic	4260	4334	.	-	.	ID=gene:ENSRNA049473409	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAAC	scaffold60627	Ensembl_Plants	LTR	2593	6016	23499	-	.	ID=2080019	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TATTCTTTATTTTTTCCTCTATGTGTATTTTACATACCATAGTAATTTGCTATAGAGAATTTCTAATTGTATTAAATCAAAAAAAGATAATATAAGATATTATATTATTGCTGGAAAAAATTGTTATTTGATTTGATACATTGTGATCCTTAACGTTGATGAATTAAGAAAAACGGAAAGAGAGGGATTCGAACCCTCGGTAAACAAAAGTCTACATAGCAGTTCCAATGCTACGCCTTGAACCGCTCGGCCATCTCTCCTACATAACTTATTATGGAAAATAAACTGAGTGAATAGCGAGTTTTCTTATTACTGCAGTAAAGGTACAACTGCAACCACTCGGGGGTTCCGTAGTTCTATTGGAAAAATTCCTTTTGATCTAAGTGGAAGGATACATGATTTTTTACTAGAAATTGTGCTTGCTATAAAATAAAAGTTTTAATTTGGGTTTTCCCACAACTAAAGAAAAATAAAATGGAAGAATTATTCTTATTGCATAATAAAATAAAGAAACCTTAGAATTCCGTTTGCATAAGATATGCTACACCATACTATCGAAATCAAAAATAGGGTATGAGACAATTAATAACTTTGAAAACACGAAATAGTTGATAACATAAGTTGTTGTTCAGAAATAGGAAAGTGGAATGAAATCCAGTCTTAGTCAAATATTTCATATCTCTTCGTGTCCAAGCAGAAGGAAAAGGATACAATTTGAGCTGAGCGGAAAATCCATATCTCTCTTATCCATTTAAAGCATATGGATTTAGAGTAGAGCATATGGATCAATCTATTTATAATTATAAGAATCGAATGTGTTTGTTTTTATGTTATTTTGTGAAGGAATGAAAACAATTCTATATAGAATGGGTTGGGAATTATGCCTAGATCCCGTGGAAATGGAAATTTCATTGATAAGACCTCCTCAATTGTAGCCAATATTTTATAGCGAATAATTCCGACAACCTCAGGATAAAAAAAGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGCTTTTTTTAGCCCTACCTATACCTCGGTCTTACGAAAAAGAGAGGGGTTGGCATAGAGAGAACCAAATTTGTAAAGCAAACAAACCCACACTTCGGGAAGGCGAGGCGAACTAACAATTCCTTCCATCGTGTATCCTCGATTGATGCGGCTTCAGATACTTCAATTGTAGATTTGAGTATTTGAGCGAAAGGTTACACCTACAGGATATGGCATGGCATGGATTATAGGCCAATCCTACTCTATTAGTATCCGTAGGCAGCATAGGGGAGAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTACCCCTTTCCTGATCAGTATTAGGGCTGAGAAGAATGGTTGGGATAACAAACAACCATCAGGTTTGTACTTTGGATACCCTATAACCACCAAAGATCGTTGAAGTAGCTAATTCCTCTAAATAGGAGGTGTTGAGAACAAAGAAATTATTGGAGCTATCGTTTTCCTCTAGCATTAATAGAATTAATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTCAGAAAAATACAAGCCCCTTTCGGTTCATAATGAGACGGGACTAATTCTATTTTGATTCTATAGATTATTCGCTTAGTACTATTATGTACAGAAGGGGGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAACGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTAAGCGACTAGAAATCGACCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACAAAACCCTTCTTACCGCAAGCTTTTAATAATATGGCCGTGATCTGTCATTATGTGCGACTATCTCCACTATAGAAAAAAAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAAGGGCTTTCTACATAGGGATCATAAAAACAACGATTTTTCCCTATCAGCTGTAGGAAGGAAGGACACTTCACGAGAATAAAAAAACGAAGAAAGTATGGCCTATACTACTACTCTATGGATAAAGCTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATCAGTGAGCGACTGGGTCGATACAACTAAAAAAATTACTTACTTATCCCATGATATGGGGCAAAATTTTGAAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTAAGTTCTTTTTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAACCGGGATAGTTACCTCTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCGGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATTTGAATAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGTAAGATCGAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTTATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAAGTAATAAAGTGAATAAAAAGAGGGGGCAATCTAAATATTGCTAATATATTAGGACCATCTTATTAATAATTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCGAAAAAAATACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAATATTTGTTTTTCAAGATAAACAATGTCCGTTAGGCACCTAATCTTTATGTCATAATAGACCCGAACACTTGCCTCAGATTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAATAGAAGGATGGTAGATAGTAAAGAAATGAACTAATCACAATATCTATCTTTCAA
scaffold67600	Ensembl_Plants	sense_intronic	14767	14843	.	-	.	ID=gene:ENSRNA049473055	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold67600	Ensembl_Plants	LTR	14136	15187	7686	+	.	ID=2080221	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=CGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTGGCTTTATTCTTTATTTATTTCATTTA
scaffold13086	Ensembl_Plants	sense_intronic	6113	6185	.	+	.	ID=gene:ENSRNA049472955	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTAAGTTGCTTTCTACTCAAAT	scaffold13086	Ensembl_Plants	LTR/Copia	6159	11270	33988	+	.	ID=1065197	repeat_name=trep3456	repeat_type=LTRs	sequence=TTTCCTAAGTTGCTTTCTACTCAAATCATCTTTCCACCATAGCCAAATCTGTGTGAGAGAGTTGAGTGTTGGGGAGACTATCATTTGAAGCACAAGAGCAAGGACTTCATCATCAACACACCATCTATTACCTTTTGGAGAGTGGTGTCTCCTAGATTGGTTAGGTGTCACTTGGGAGCCTCCGACAAGATTGTGGAGTTGAACCAAGGAGTTTGTAAGGGCAAGGAGATCGCCTACTTCATGAAGATCTACCTGAGTGAGTCAAGCCCTTCATTGGCGATGACCATGGTGAGATAGACAAGGTTGCTTCTTCGTGGACCCTCTGTGGGTGGATCCCTTCATGGACTCGCGCAACCGTTACCCTTCGTGGGTTGAAGTCTCCACCAACGTGGATGTATGATAGCACCACCTATCGGAACCACGCCAAAAATCTCTGTGTCTACATTGCATTTGCCACTCCAAACCCCTCCATTTACCTTCATATGCAATGATTTACATTCCACTGCTATACTCTTAGAATTGCATGTGTATGTTGATTGCTTGACTTGTGCTAAGTTGCTAAAATCTGCCAAAACTTGAAATTGGGAAAAGGCTAGATTTTTATTTGGTCAAGTAGTCAAATCACCCCCTCTAGACCTACTTTCGATCCTACAAGTGGTATTAGAGCTTTGGTCTCCATTTGCATTGATTTCCATAGCTTCGGTGATCATAGCCTTGGTTTCACAACCTAGGAGAGTATGGCGTCTAGTGAGGGAAATTACCACCGTAGAGGTCCTTACTTTGATGGTACTAATTTTGCTAGTTGGAAGCATAAGATGAAAATGCATATTCCTGGTCATGACCCCGCCGTTTGGGCTATTGTGCGTATTGGCTTGCAAGGTGAATACTTTGAGGATGGAAGAGAACCGGATTGTGAAGCGTCCGCGGAAGAAGCGAAGATGTTGCAATACAATGCTCAAGCTTGCGATATTCTTTTCAACGGTTTGTGCCCCAAAGAGTTCAAAAAAATCAACCGTCTTGAGAATGCAAAGGAAATTTGGGATACTTTGGTTGATATGCACGAAGGTACCGAGTCCGTTAAGGAATCCAAATTGGTTGTGCTTCAAAGTCAACTTGACAAGTTCAAAAATGAAGGATGGTGAAGGAGTCGCTGAAATGTATTCTAGGCTTGCTCTCATCACAAATGAAATTGCCGGCTTAGGAAGCGAAGAGATGACCGACAAATTCATCATCAAGAAGATCCTAAGAGCCTTGGATGGAAAATATGATACCATGTGCACCTTGATCCAAAGGATGCCCAATTACAAAGATCTCAAGCCAACAAAAGTCATTGGTAGAATTGTTGCTCATGAGATGTCACTCAAGGATAAGGAAGAGCTCCACAACAAGTCAAGTGGTGCTTACAAAGCTTCATGCGATGCCCCGACAACATCAAGTGAGAAACAAGTCTTCAATGAAGAATTGAGCCTAATGGTGAAGAACTTCAACAAGTTCTACAAGAGTAGAAGCAAATAGAGAAGTTCCAAGTCAAGGTCCTACAATGACAAAAGATCTTCTAGTCGTGATCGCAATTGCTACAATTGTGGAAGACCCGGACACTACTCCAATGAGTGTACGACTCCCTACAAGAGAAGATAAGAATCACCTAAAAGGAGAAGTAAAAGAGATGAATAACCACCAAGAGAGAGAAGGAGTAGAGATGATCGTTATGAATGAAGACCCTCTCATAGAAGCAAGGATTCGTAAAGGAAGGATAATTCATCAAAGAGCTACACAAGATGAAGACATCAAGCTCACGTTGGTGAATGGGTATCTGGTTCCAACTCCGTTAACTACTCCGAGAGAAGTTATCACTCCGACTTCGAATATACTCAAGATGAAGGTGTTGCCGGTCTTGCACTTGTGTCATACAACTCCTACGACATATTTGACTCACCAAATGAAGGAATTGGAAGATGCTTCATGGCTAAAGGCCCTAAGGTATCACACCCCGAGTATGTTGATTTCAATAGTGATGAAGATGATTTGCTAGGTGATGATGATTTACTTGTTGACAACACTAGTGATGAAAACTATGATGAAATTGCTATTAATCATGCTAATCAAGATGAAACGAATGACAATGATAAGAAGGAGATTGAGTGTCTAAATAAAGAACAAAACACTCTTAATTTAGCTCATGAAACTACCTTAGAGGATCATCGCGAGCTTTTAAAGACTCATGAGAAGCTACGCTTTGAGAAGCTCAATTTAGAGCAAGAGCATGGGTTCTTAAAATCAATCTATGCTGGTCTTCCTAAGAAAAGTTCTTCTTACATTGCCAAGAGTTTACTCTTGTCTACTTACATGCCACAAGTAAAATCTAGCAACAAGAGCAAGACAGATTCTTCATCTAGTAGTAACAATAATCATGCTAAATCCAATATTGTTGCTTCTAGTAGTTATCTTGATTCCACTAATGTTTATCTTAGCCAAGTTACACTTGAGCAAGAAAATATCTTATTGAAGGGAATTATAGAGATAGGTGTTTACAAGAGCCTTGCAGGAAGTAAGCAATTCGAGGAAATTGTATGCAAGCAAGGAAGGCACCGGAAGAATCAAGGTGTTGGTTTTGAACGAAAGTTCGATGCCAATGGAGTTGAGTGGGAAGAAGATCAATACCCCAAGACGAAGTTTGTTCCTCAACAAGAGAAGTATGACCCCACTTCTTTCAAGGGAACACAAGCTCTAGATGATATTCCACCACAAGCTAAAAGGCAAGGACAAGCTTCAAGAAGAGATTGATTCATTTGAAGAAGCTCCTAAGGCCTTGGTCAAGTGGGTTCCCAAGACTACATCAAGTATGAATACAACTCCAAGGATTCCCATCAAGTTGATGTGGGTCCCGAAGAAGAAGAACTAGAGAGTTCTTGAGGGTGACTCCGCCAACATACTTCACTCATATTCATTTTGGCAAGGACAAATGCAATCAACTTTGATATCTTGCACTAGTTCAAGGAGTCACAAACCCTCTTGTTGGTAAGACAAGGGACAAGGTAACCTAATGCTTTCATGGACATCATGATACGTGCATTTCACTCTATGTCTATGGATATCCTTGTATGTTCCTTGTGGGACTAACCCATGTAGCTATTGAAAGGGCAACTCACTCCAATGGATTGCTCCAAATGATCTACATCAACATTGAGCATCCACATCTTCAACACCTACATGAAGTCATCATCGAAAAAACCCAAGGTTAGTTCATCCCTCTAAGGGGGGATATCACATCTAGGGGGAGCTTTACTCTAAGAATTGAGCTAAAGCAACTCTAATGGTGTGAACACAACAATGCTTTATGTAAAAGTGGTAACCCCACTTGTGCTTAAACGATGAGTATGACCTACGATCAAATGTTCTCATTTGACTCCTCGGTCAATATACTCATATATAGATGACCTAGTCATCGCCAATTGCTTGATAGATGCTAAAGTGTTTGTGCATGCTTTGCCACATATTTCATTTGCTATCTTATTGTGTGAGCATGTTGGTTTCATAATTTTCTCCATCCAAGGACATCCATTTGTTGCTTTGATTGTTTGGTTTTTCTCTTTGCCAAATGGATGGCCAAGAATGCCTAAGTACTCCCTCTAGATAGCTATGCTTTTCTCGTCTCAAACTCTATTCATGCTACATCAGAAAGTTTGAACAAGTCGAATTCGGACCCTTCGGGTGAGGAGCACTCGGAGCCATCGATCCATCAAGGTCTTAAACTTCAAAAACCTCTTAATGCATCTCGGTCAGACCAATTCATCCTACTTGGTCTCACCGAATTCATTAAGTTGATCTAGGTTTTCATCTCGGTGCAAACAATTTGAACAATTCGCTCACACCGAGTTGCAGTAACTGCTAGTAGTTTAGCATCTCGGTGCCACCGAGTCGTTCCACTCGGCCACACCAACAGTGACTAGGTATATATACCGCGGGTTGAAAATTTGGAAATTTCTCCAAACCACTCGATCGCGCCTTCCCAGCTCTGCCGCCCACTTGGTCTCTGGATCGTCGCCATCGTCGCTAGTGCCTCCTGCCACTAGTCTCTGTCGCTGCCAACAGAAATCTCACCGCTGTTGTCGTTGTAGCGAGTTCGTCGCCAAGTTAGGGTACGAACTCGACCTCTTTGTGCGTTCTCTTATTATGATTCTTACACAAAGATCATTGCCATTGTTCTTACCACGAATGAGATCAATCTATCCACCTAAAATTCCATTATAATAGATTTGATGCAAAAACTTAGGGTCAGGTTTCCGTCGAACTCATTTCGGATCGACCGATTTGAGGATCTCGGTCTCACCAATTTGGCTCAGGCCATTGCACAAGTACAACTCGGTCTGACCGAAGTGTACTAATCGGTGTGACCGAAATCATTTACTCTATGAAACCCTAGCATCTCGAAGTCACCGAACTGCATTTCTGTCTGACCAAATGCATGTTTAGATTCTGTAAATGCTTCGGTGTCACCGAGTTTGTCAAATCGGTAGCTCCTAAATGCTTTCTGCAGAAAACTAAAGTTAAGTTTTTATCTCAATATTTTTTGCAAAATAACTGTCCTTTGTGATGCTCATCCACTCTATCTACATCCATCTATTCACAGGGTCAATTTGAGACATGTCAGAGGGCAGTGATAGTCAAAACAGGTCTGAAGGCCAAGTGAATCTTAGTGAGGGCACTAGTCCCTTAGTCAGTTATGAAGATGGCAGCAGAAGCACTCCAAGCAGCTTGCCTAAGGCTGCTACTAGGCAAAGGAAGAAGAGAACTTCAGAATCTGAGCATGAGGATTTTGTTGTTGAGGAGGAAGTGACCTCCAAGAAGAAAGTGTTGAAGAAAGAGTATGCTGCTGCTGCAATCAAGCCTGGAATGCAAAAGAAAGCTCCTACCAAGAGGAAGCCTATGTCTAAAGCTAGAGCCTCCACTCAAGAAACTATGGAGTTCACTCTTGAACCAAGAGAAGAAGAGGCTGCTGGAGGAAAGAAGAGGAAGGAGAGAGTGAGGAAGACTATTGCCAGAGTCATTGGTAAACCATCTATGATGAGAGACTCTGATGAGTAAGAGGAGGAGGAAGATCCAGTTGCACC
scaffold262405	Ensembl_Plants	sense_intronic	54795	54882	.	+	.	ID=gene:ENSRNA049470404	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGGGATCATGGAAATTTTGAAATGAATGGAAAGATAATCTACTTTCAT	scaffold262405	Ensembl_Plants	LTR	54004	56875	12994	-	.	ID=2079997	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ATTTATACTTGTTCCTGAAGTCGAAAACGTTCCATCTGTTCCTGAATAGCTTCTTTCAAAAGGGCTTCTGCTTCCTCGGTGAATGTCTTGGTAGAAGATATAATTTCTTGGAATTGAGGTTTATTTGTTTTTAAGTAAGTCCGTAACTCAACGAGAAATTTCCTTACTTGTCCAATTTCTAATGAATCAAGATAACCGTTCGTTCCGGTATAAATAGTCATTATCTGTTCCTCCACCGTTAAGGGGGCGGATTGGGATTGTTTGAGCAATTCACGTAATCGTTGACCTCTTGCCAATTGATTTTGAGTGGCTTTATCGAGATCAGAAGCGAATTGCGCAAAGGCTTCTAATTCTGCGAATTGCGCCAATTCCAATTTTAATTTGCCCGCTACCTGTTTCATGGCTTTAATTTGCGCTGCAGATCCTACTCTGGAAACAGAAATACCCACATTAATCGCGGGTCTAATTCCAGAATTGAATAGATCCGCGGATAAGAATATTTGTCCATCTGTAATGGAAATTACATTAGTAGGAATATACGCCGAAACATCTCCTGATTGGGTCTCAACTATTGGTAAAGCAGTCATACTTCCTTCGCCTAAACGAGAACTTGATTTAGCGGCTCTTTCCAAAAGGCGCGAATGCAAATAAAAAACATCTCCTGGATAAGCTTCGCGACCTGGCGGCCTTCGTAATAGAAGAGACATTTGACGATAAGCCTGTGCTTGTTTGGAAGGATCATCATAAATAATTAAAGTATGTCGTTCACGATACATAAAATATTCAGCCAAAGCCGCTCCTGTATACGGAGCAAGGTATTGTAATGTAGCCGGAGAATCCGCCGTTTCGGCCACCACAATAGTGTATTCCATTGCTCCTCTTTCCTGTAAAGTAGTTACGACTTGAGCCACAGAAGATGCTTTTTGACCAATAGCTACATAAACGCATATTACATTTTGTCCTTGTTGATTAAGAATCGTATCTGTGGCTACGGCTGTTTTACCTGTTTGCCTGTCCCCAATAATTAATTCTCGCTGCCCACGTCCTATAGGAATCATCGAATCAATAGCAATAAGTCCTGTTTGAAGAGGCTCATATACAGAACGTCTCGAAATAATCCCTGGAGCGGGAGATTCAATTAAACGAGATTCAGAAGCCGAAATTTCACCTCGACCATCAATAGGTTTAGCCAGGGCATTTACAATACGACCCAAAAAAGCCTCGCTTACTGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAGAGCTTCCCTCTTGGATCATCAAACCGTCACCCATTAATACAACGCCAACATTATTTGCTTCCAAATTCAGAGCAATGCCTATTGTACCCTCTTCAAATTCTACTAATTCACCTGCCATTACTTCATCAAGACCATAAATACGCGCAATACCATCGCCTACTTGAAGTACGGTACCGGTATTTATAATTTTGACTTCTCTATTATATTGCTCAATACGTTCACGGATAATATTACTAATTTCGTCGGCTTGAATGGTTACCATGAGTATTTATTAATTATTTTTTTGAAGAAAAAAAAAATAATGCCTACACTAGAAGAACTAATCAGTTATTTCTTTCATCACCCCAAATATGCCGATATTGGCACTGATGGTACGTAAATGTACCTCGTTGGTCAAACAACTGTTCAGAGTTCCTAGAGCTTCTTGTAAGGCTTGTTGGAAAACTCGTTGTCGAACTTGATTAATTGCTCTTTGTTGTTCAAAACGAATGGTTTCATTCTTGTAATTTTCTAATTGTTCCAAAGTCTTAGAAGTTGAATTAATCAAATTCAATTTTTCTCGTTCTATCTCAGAGTATCCATTCACTCGAAACTCATCTGCTTCCATTTCCACTTTCCGCAATCGGGCACGGGCTTTTTCCAATTGTTCAATAGCCCCCTCACGCAGCTCATCCGAGTTTCGAATAGTATTCAAGATCCTCTGTTTTCGATTATCTAATAAATCACTTAATGAAAGTAGATTATCTTTCCATTCATTTCAAAATTTCCATGATCCCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCAATTACTGATGGGAAATTAATTCACATATCATTTTTTTTTTAATGTAATGGAGCCTATCCTCTTTTCTCTATTCATATTTAAAAATATTGAAATCGATCACTAATACAAAACCCAAATATTTGGAGGACTCTTCTGACCAAACAAGTAATTGTCAGCAAAGTTGTTTCCTTTTTTTTTTTTCTTCAAATTCAAAGAATTCTTTTTACTTGATACATAGGTCATCGATTTCGCACAGCATTGGATAAAAATGGGTGGAATACTCATTTTCGCAATATAAAGATTCAAATCATTTTATCGACATGAGTGTTTTATATCGAAAAAAATTTCCAACTATTCAGTTTTGAAACTATTTCTCTATTAACATAGTAGTTGAAAGAGTACCAGGCATGCTGCGTCTGTACTTCAAAGGGTTTAGCTTTAACCATGTTAATGGTCCCCGCATTATTGGTTGATAGAGAATCAAAGTATATTTACCAATGAATCACGAAATGCTATGGTTCTTAAAGATAATTTCTGAATTTAGATTTATTCATAAGTAATTCGTGGGATCATGCACTTTCTAGAAAAAAAAGTGCAGCTGGTCAGACCCAGCCTATTCTTGAAATAAACAACTCACACACACTCCCTTTCCAAAAAAAATCAATACACCAAATACTACACTTAGATTTATTGGATTTGTTGCTAAAATATCGGTATTAAATCCGAAACTCCCGGCGGATGGCCAGTGACCCAAGAAAACGAAAGAATCGGTTAGATTTTTCATATAATCTCCTCTTATAGATA
scaffold262405	Ensembl_Plants	sense_intronic	22116	22189	.	+	.	ID=gene:ENSRNA049470395	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGATGCAAATCTCACGTACGGTTCTGGAACGGAGATTCCTTGAATCGAATGACGACCGTAAC	scaffold262405	Ensembl_Plants	LTR	21329	23267	8862	+	.	ID=2079993	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ATGGATTGCTACCTATGCCTAGATCTCGGATAAATGGAAATTTTATTGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGTGATTTGATTATTATTTTTTTTTACCGCCCTAAATCTTAAGAGAAAGGCACATTAGTTGGGATAGCAAGAAAAAGATAGAAAAAAATCTCCGCTTGTTGAAGGTGAAGTTTGTAAATAAAACAATTCCTTCTATCGTGTATCCTCGATTAATGCAGCCTCAGATGCTTCAATTGTCAATTCTAGCATTGAGCGAAAGGTTATCCCTATAGGTTCTATATTGCGGGTCAGCCCTCCTCTACTAGTACCAATAGGGGGCAGAGGGGAAGAAGCACTACGTCTAGGAATCAACAAGACGAAAACTTTGTTAGCAAATTTCCCTTTCTTTATCTGGACAGGGGCTAAAGAAAAGAATGGTTGGGACAACAAACATCCATCTTGTTCGTACTTTGGATACCCATATAACCATCGAAGACTGTTGAAGTGACTAATTCCTAGAAATTAAGTGGCGTTGAGGACAAAGAAATTGTTGGAGTTACCATTTTATCTAGTAACAACATGCTTGATGTTAAGAAAAGGTCTTTTGCAGAAAGGTTGGCTAGAGATTTATTCTAAAAACACTAGCCCTACTTCGTTCATAATGATAAGATTTCCATCTTTTTTGATTCCGTGTTATGTATTTTTCTTTCTCATTATGCACATAAGGGAGGAGCCGTATGAGATGCAAATCTCACGTACGGTTCTGGAACGGAGATTCCTTGAATCGAATGACGACCGTAACGGATGTCGGCTCAATCGGAAGGAAATTATGCGGAAGCTTTACAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATCCACACAAGTAACGGAGAACATACGAAAGCTTTAGAATATTATTTTCGAGCACTCGAACGAAATCCGTTCTTACCACAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAAAGGAAAAGAAAGAGCAAATCTCCTAGTAACTACTAGAAAAACAAAAAAAAGGCTTTCTACATATAATCGTCCAAAACAACGATTTTTATCAGCTGTAGCAAAGAAATAAACTTCATAGAAGTCGAAATATGAAGAAATCGATATGCCTAAATAGTTTGATTCTATGGATAGGATAAAGGGTCTAATTGATAGGGAAGCACCGTAAAGATCAATTAGCGAGATTTTGGACTGATACAATAAGAACTGCTCGCTTATATCATAATATACGAAAAAAAAATCTACTATCTACTTATGTAATAGGGTAGATCCCCCTAAAGCGTTGAGCAGCGGTGTAGCATCAGATCCCAAAGATAGTAAATTTTTTCTTCATAAGAAAGAAAAGACTTTTTCAAAGATTCTATATAAATTTATATATGAAACCGGGATAGTTACCTTTCAGAAATTTATAAAAATAGTGGAATATCTATGCTTTATTTTTCTGAAGGTGGGAAAAAAGAAAAAACGGATTATTAATCAAAATTCAAGTTTGAAACTTATGTAATTAACCTCTTTTGGTTAACTTGAAAAAAAAAAACTGAGATATCATACCAAAAGAATTAACTGCCGAGCCGTATGAGGCAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAAATTACCCGCCTATTCCGACCGTGGAGAACAGGCCATTCGGCAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCGATAGCGCTTACTCCTGAAAATTATATTGAAGCGCAGAATTGGTTGAAGACTACAAGGCGTTTCGAAT
scaffold262405	Ensembl_Plants	sense_intronic	23048	23116	.	+	.	ID=gene:ENSRNA049470380	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CCGAGCCGTATGAGGCAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAAATTACCCGCCTATTCCGAC	scaffold262405	Ensembl_Plants	LTR	21329	23267	8862	+	.	ID=2079993	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ATGGATTGCTACCTATGCCTAGATCTCGGATAAATGGAAATTTTATTGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGTGATTTGATTATTATTTTTTTTTACCGCCCTAAATCTTAAGAGAAAGGCACATTAGTTGGGATAGCAAGAAAAAGATAGAAAAAAATCTCCGCTTGTTGAAGGTGAAGTTTGTAAATAAAACAATTCCTTCTATCGTGTATCCTCGATTAATGCAGCCTCAGATGCTTCAATTGTCAATTCTAGCATTGAGCGAAAGGTTATCCCTATAGGTTCTATATTGCGGGTCAGCCCTCCTCTACTAGTACCAATAGGGGGCAGAGGGGAAGAAGCACTACGTCTAGGAATCAACAAGACGAAAACTTTGTTAGCAAATTTCCCTTTCTTTATCTGGACAGGGGCTAAAGAAAAGAATGGTTGGGACAACAAACATCCATCTTGTTCGTACTTTGGATACCCATATAACCATCGAAGACTGTTGAAGTGACTAATTCCTAGAAATTAAGTGGCGTTGAGGACAAAGAAATTGTTGGAGTTACCATTTTATCTAGTAACAACATGCTTGATGTTAAGAAAAGGTCTTTTGCAGAAAGGTTGGCTAGAGATTTATTCTAAAAACACTAGCCCTACTTCGTTCATAATGATAAGATTTCCATCTTTTTTGATTCCGTGTTATGTATTTTTCTTTCTCATTATGCACATAAGGGAGGAGCCGTATGAGATGCAAATCTCACGTACGGTTCTGGAACGGAGATTCCTTGAATCGAATGACGACCGTAACGGATGTCGGCTCAATCGGAAGGAAATTATGCGGAAGCTTTACAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATCCACACAAGTAACGGAGAACATACGAAAGCTTTAGAATATTATTTTCGAGCACTCGAACGAAATCCGTTCTTACCACAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAAAGGAAAAGAAAGAGCAAATCTCCTAGTAACTACTAGAAAAACAAAAAAAAGGCTTTCTACATATAATCGTCCAAAACAACGATTTTTATCAGCTGTAGCAAAGAAATAAACTTCATAGAAGTCGAAATATGAAGAAATCGATATGCCTAAATAGTTTGATTCTATGGATAGGATAAAGGGTCTAATTGATAGGGAAGCACCGTAAAGATCAATTAGCGAGATTTTGGACTGATACAATAAGAACTGCTCGCTTATATCATAATATACGAAAAAAAAATCTACTATCTACTTATGTAATAGGGTAGATCCCCCTAAAGCGTTGAGCAGCGGTGTAGCATCAGATCCCAAAGATAGTAAATTTTTTCTTCATAAGAAAGAAAAGACTTTTTCAAAGATTCTATATAAATTTATATATGAAACCGGGATAGTTACCTTTCAGAAATTTATAAAAATAGTGGAATATCTATGCTTTATTTTTCTGAAGGTGGGAAAAAAGAAAAAACGGATTATTAATCAAAATTCAAGTTTGAAACTTATGTAATTAACCTCTTTTGGTTAACTTGAAAAAAAAAAACTGAGATATCATACCAAAAGAATTAACTGCCGAGCCGTATGAGGCAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAAATTACCCGCCTATTCCGACCGTGGAGAACAGGCCATTCGGCAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCGATAGCGCTTACTCCTGAAAATTATATTGAAGCGCAGAATTGGTTGAAGACTACAAGGCGTTTCGAAT
scaffold41570	Ensembl_Plants	sense_intronic	26647	26720	.	+	.	ID=gene:ENSRNA049470046	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	scaffold41570	Ensembl_Plants	LTR	25951	30537	33810	-	.	ID=2080204	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AGATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTACGAAACTTTCGTTATTGGGTCCTTCTCCTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGATGATTCTTTACTGCGACTGCATCCATCTCGAATAATGCGATATCTCACACCAAGTTCAAAGATACTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTTATTTCAAATCCAGAAGTGAATCGTACTAATTTCCTTTACGTAAGGCAGAGTTGGGTTTTTGGGGTTGATAGTGGAAAAGTCGACAGAGAA
scaffold41570	Ensembl_Plants	sense_intronic	28983	29061	.	+	.	ID=gene:ENSRNA049470018	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	scaffold41570	Ensembl_Plants	LTR	25951	30537	33810	-	.	ID=2080204	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AGATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTACGAAACTTTCGTTATTGGGTCCTTCTCCTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGATGATTCTTTACTGCGACTGCATCCATCTCGAATAATGCGATATCTCACACCAAGTTCAAAGATACTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTTATTTCAAATCCAGAAGTGAATCGTACTAATTTCCTTTACGTAAGGCAGAGTTGGGTTTTTGGGGTTGATAGTGGAAAAGTCGACAGAGAA
C161444524	Ensembl_Plants	sense_intronic	156	234	.	+	.	ID=gene:ENSRNA049469355	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGTGAGATGATAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	C161444524	Ensembl_Plants	LTR	1	236	1566	-	.	ID=2080289	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTATCATCTCACACGGCTCCTAAGTGAGAAAAGAAAGAAGAACTCGTCTTCTCTATTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCAATTTCGGAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAAT
scaffold60938	Ensembl_Plants	sense_intronic	49931	50014	.	+	.	ID=gene:ENSRNA049468657	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	scaffold60938	Ensembl_Plants	LTR	48409	52942	35522	-	.	ID=2080136	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=AACGACACATTATGGCAAAAAAAAGTTTGATTCAGAGGGAGAAGAAGCGGCAGAAATTAGAACAGAAATATCATTTGATTCGTCAATCTTTAAAAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAACGAAAATGCGAGAAAAATTGCAATCCCTACCGCGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTTGACCGGAAGACCTAGAGCTAACTATCGACATTTTGGGCTATCCGGACACGTACTTCGAGAAATGGTTTATGAATGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCTTTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTGTATAAATGGACTATTCTATTTGTATAGATATTGGTAGAGGGGCGTATCCAACCCTCTTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGTATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTGGGGTTGCGGGTTCGATTCCCACTACCGCCTCCATACTCCTTCTTTATGATATATGCATGATATAATATATACATCATGCATTTGTATCTGGATTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTTCTCGGAAGAAGCAAAAAAATAAAAGAAAGAATAAAATATGAAAGAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATACTAAACTAAAAACAAAGAAAACTTTTTTGCATGATTCAAATGACAAAGCTTTCTCAACGATTCCTATTCTACTAACAAGAGTAGACATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCCAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCGCTTGCTCGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCAGAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGCTATCTGCTCTTCCACTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGCGCTAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCCGCGGATCCTACTCTGGAAACAGAAATACCCACATTAATAGCGGGTCGAATTCCGGCATTGAATAGATCCGCAGATAAGAATATTTGTCCATCTGTAATGGAGATTACATTAGTAGGAATATAGGCGGAAACGTCTCCAGATTGAGTCTCAACTATTGGTAAAGCGGTCATACTTCCTTCGCCTAAAAGAGAATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGTCCGGGAGGTCTTCTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCCCTCCTCATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCGTATACGGAACGCCTGGAAATTATACTTGGAGCAGGAGATTCAATTAAGCGAGATTCGGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATTTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTTAAGTAATGAGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTAAACTAAGGACGGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATGGGGTATTATCTGTCCCGATAAATAGATAATTCCAGGAGTAATAAATAGGAGTAAATTAAATAAGTATTGATATAATTGGAATTGTGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCGAAAGAATTTTTTTTTTAAGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATA
scaffold299005	Ensembl_Plants	sense_intronic	896	972	.	-	.	ID=gene:ENSRNA049467623	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	scaffold299005	Ensembl_Plants	LTR	788	1318	3399	+	.	ID=2080285	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTAGCTTTATTCTTTATTTATTTCATTTC
C159299885	Ensembl_Plants	sense_intronic	78	148	.	+	.	ID=gene:ENSRNA049467002	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=TGGAGCCGTATGAGGCGAGAGTCTCACGTATGGTTCCTTTGAGAAGGGTGTGATACCACCACCCATCAGGC	C159299885	Ensembl_Plants	LTR	79	113	228	-	.	ID=2080293	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GAACCATACGTGAGACTCTCGCCTCATACGGCTC
scaffold29891	Ensembl_Plants	sense_intronic	63596	63690	.	+	.	ID=gene:ENSRNA049465147	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCGTGTGATGGGTGACTATCTAGCACGGTTCAGAGAGCACGTGTATGTAGTCTGCGCTGGTGAATGGAAGCCGTTCCATTTGGACTCCAT	scaffold29891	Ensembl_Plants	LTR/Gypsy	63672	63838	1203	-	.	ID=2005972	repeat_name=RLG_Sabrina_3B_033_P03-1	repeat_type=LTRs	sequence=TTCCATGCTATTATATTATCCATATTGGATGTTTTATATGCATTATTGTGCTATTTTATATCATTTTTTGGGACTAACCTATTAACCTAGTGCCAAGTGTCAGTTGCTGTTTTTCCTTGTTTTTGCCATTACAGAAAATCAATACCAAATGGAGTCCAAATGGAAC
scaffold104576	Ensembl_Plants	sense_intronic	59817	59895	.	-	.	ID=gene:ENSRNA049461005	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	scaffold104576	Ensembl_Plants	LTR	58329	61966	26753	+	.	ID=2080217	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTCGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGAAAGAGAATTTGATAAGGCAATG
C164268436	Ensembl_Plants	sense_intronic	30	136	.	-	.	ID=gene:ENSRNA049461255	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CGGAGCCGTATGAGGCAAGAGTCTCACGTACGGTTCCTTTGAGAAGGGTGTTATACTGAAGGAAATATGCCCGAGAGGAAATAATAAAGTTGTTATTTATATTTCCT	C164268436	Ensembl_Plants	LTR/Copia	1	82	625	-	.	ID=1768467	repeat_name=RLC_Angela_3B_061_J17-1	repeat_type=LTRs	sequence=ACTGAAGGAAATATGCCCGAGAGGAAATAATAAAGTTGTTATTTATATTTCCTTATATCATGATAAATGTTTATTATTCAT
scaffold55668	Ensembl_Plants	sense_intronic	58322	58385	.	+	.	ID=gene:ENSRNA049479756	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGAC	scaffold55668	Ensembl_Plants	LTR	57640	59113	10557	+	.	ID=2080024	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=GCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAAAAAGAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAAAGGGCTTTCTACATAGGGATCGTAAAAACAACGATTTTTCCCTATCAGCTGTAGGAAGGAAGGACACTTCACGAGAATCAAAAAACGAAGAAAGTATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATACAACTAAAAAAAACTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTAAGTTCTTTTTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAACCGGGATAGTTACCTCTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCGGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATTTGAATAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGTAAGATCGAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTTATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAAGTAATAAAGTGAATAAAAAGAGGGGGCAATCTAAATATTGCTAATATATTAGGACCATCTTATTAATAATTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAAAAATACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAATATTTGTTTTTCAAGATAAACAATGTCCGTTAGGCACCTAATCTTTATGTCATAATAGACCCGAACACTTGCCTCGGATTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAAAAAATAGAAGGATGGTAGATAGTAAAGAAAAGAACTAATCACAATATCTATCTTTCAAA