Scaffold29859	Ensembl_Plants	snRNA	14697	14799	.	-	.	ID=gene:ENSRNA049477896	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTT	Scaffold29859	Ensembl_Plants	DNA/CMC-EnSpm	14799	14869	235	+	.	ID=178283	repeat_name=EnSpm-4_HV	repeat_type=Type II Transposons	sequence=GAGTATAGCAGTCGCGCTCGAGCTTATAAACCGGTCGAATCGTTCTTGTGTAGCCGAGGTGGGACTAAAC
Scaffold87297	Ensembl_Plants	snRNA	11773	11875	.	-	.	ID=gene:ENSRNA049476643	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTGCCTTTGGGGACATCCGATAAAATCGGAATGATAGAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACATGCACAAATCGAGAAATGGTCCAATTTTTT	Scaffold87297	Ensembl_Plants	LTR	11752	11871	582	-	.	ID=2202269	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CTTTGGGGACATCCGATAAAATCGGAATGATAGAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACATGCACAAATCGAGAAATGGTCCAATTTTTTTTGAGATTTTCCGAGCAAGT
Scaffold87297	Ensembl_Plants	snRNA	10611	10713	.	-	.	ID=gene:ENSRNA049476635	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTTGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCAGAAGGATGACACGCACAAATCGAGAAATGGTCCAATTTTTT	Scaffold87297	Ensembl_Plants	LTR	10587	10715	636	-	.	ID=2202268	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TCGTCCCTTTGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCAGAAGGATGACACGCACAAATCGAGAAATGGTCCAATTTTTTTTGAGATTTTCCGCGCAAGTCCC
Scaffold120442	Ensembl_Plants	snRNA	1697	1799	.	-	.	ID=gene:ENSRNA049476565	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACTTCTGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCCAGGATGACCCGCACAAATCGAGAAATGGTCCAATTTTTT	Scaffold120442	Ensembl_Plants	LTR	1674	1833	596	-	.	ID=2202255	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CTGGTTTATAAGGCAGAGCGTGTCAGCTAGCATCGTCCCTTCGGGGACTTCTGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCCAGGATGACCCGCACAAATCGAGAAATGGTCCAATTTTTTTGAGACTTTCTGCACAAGTCCC
Scaffold120442	Ensembl_Plants	snRNA	2856	2958	.	-	.	ID=gene:ENSRNA049476556	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCTGATAAAATTGGAATGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTTCAATTTTTT	Scaffold120442	Ensembl_Plants	LTR	2834	2960	635	-	.	ID=2202256	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TCGTCCCTTCGGGGACATCTGATAAAATTGGAATGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTTCAATTTTTTTGAGATTTCCGCGCAAGTCCT
Scaffold137589	Ensembl_Plants	snRNA	5070	5171	.	+	.	ID=gene:ENSRNA049476436	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GGCCCACCCTGCGCCCGCTGCGCATTGGAATGATACAGAGAATATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGATATGGTCCAATTTGTT	Scaffold137589	Ensembl_Plants	LTR	5093	5192	536	+	.	ID=2202262	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TTGGAATGATACAGAGAATATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGATATGGTCCAATTTGTTTTGAGATTTTCCACGCAAGTC
Scaffold137589	Ensembl_Plants	snRNA	4055	4149	.	+	.	ID=gene:ENSRNA049476432	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GGGCCCATCCGATAAAAGTGGAACGATACAGAGAAGATTAGCCTGGCCCTTGCACAAGGATGACACGCACAAATTGAGAAATGGTCCAATTTTTT	Scaffold137589	Ensembl_Plants	LTR	4069	4173	572	+	.	ID=2202261	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=AAGTGGAACGATACAGAGAAGATTAGCCTGGCCCTTGCACAAGGATGACACGCACAAATTGAGAAATGGTCCAATTTTTTTTGAGATTTTCCGCGCAAGTCCCT
Scaffold137589	Ensembl_Plants	snRNA	1670	1773	.	+	.	ID=gene:ENSRNA049476426	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GCTCCCTTCGGGGACATCCGATAAAATTGGAATGATACAGAGAATATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGATATGGTCCAATTTGTT	Scaffold137589	Ensembl_Plants	LTR	1672	1794	599	+	.	ID=2202259	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CCCTTCGGGGACATCCGATAAAATTGGAATGATACAGAGAATATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGATATGGTCCAATTTGTTTTGAGATTTTCCACGCAAGTC
Scaffold137589	Ensembl_Plants	snRNA	8554	8656	.	+	.	ID=gene:ENSRNA049476415	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTGCCGTTGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTT	Scaffold137589	Ensembl_Plants	LTR	8560	8680	617	+	.	ID=2202265	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTTTTGAGATTTTCCGCGCAAGTCCCT
Scaffold137589	Ensembl_Plants	snRNA	2833	2935	.	+	.	ID=gene:ENSRNA049476400	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTTGGGGACATCCGATAAAATTGGAACGATATAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGGACAAATCGAGATACGGTCCAATTTTTT	Scaffold137589	Ensembl_Plants	LTR	2831	2959	594	+	.	ID=2202260	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CGTCCCTTTGGGGACATCCGATAAAATTGGAACGATATAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGGACAAATCGAGATACGGTCCAATTTTTTTTGAGATTTTCCGCGCAAGTCCCT
Scaffold32441	Ensembl_Plants	snRNA	9058	9177	.	-	.	ID=gene:ENSRNA049475687	Name=U5	biotype=snRNA	description=U5 spliceosomal RNA	sequence=AGCTGCGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACGCTACACTAAGCAGCATACCCTAATTTTTGAAGGGTGTCTTCTCCTTGTGAGAAGGC	Scaffold32441	Ensembl_Plants	LTR	9080	9180	554	-	.	ID=2243675	repeat_name=LTR_Gm_14_4511	repeat_type=LTRs	sequence=CGCAGCTGCGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACGCTACACTAAGCAGCATACCCTAATTTTTGAAGG
Scaffold32441	Ensembl_Plants	snRNA	20119	20229	.	-	.	ID=gene:ENSRNA049475681	Name=U5	biotype=snRNA	description=U5 spliceosomal RNA	sequence=AGCTGCGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACGCCACACTAAGCAGCATACCCTAATTTTTGAAGGGTGTCTTCTCCCTG	Scaffold32441	Ensembl_Plants	LTR	20132	20232	565	-	.	ID=2243676	repeat_name=LTR_Gm_14_4511	repeat_type=LTRs	sequence=CGCAGCTGCGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACGCCACACTAAGCAGCATACCCTAATTTTTGAAGG
Scaffold8738	Ensembl_Plants	snRNA	13313	13473	.	+	.	ID=gene:ENSRNA049466199	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=ATACTTACCTGGACAGGGTTGACGGCTGATCAAGAAGGGCCGTGGCCTAGATCAATGGCTCACAATGCACTTGGTGAGTGCGTTGATCTACCATCTTCCCAAGTGGAAGAATGGACGTCATAATTTATGGTAGAGGGGGTACGCGTTCGCGCGGCCCCTGC	Scaffold8738	Ensembl_Plants	LTR	13300	13504	768	+	.	ID=2240829	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=CGACGTTGCAACATACTTACCTGGACAGGGTTGACGGCTGATCAAGAAGGGCCGTGGCCTAGATCAATGGCTCACAATGCACTTGGTGAGTGCGTTGATCTACCATCTTCCCAAGTGGAAGAATGGACGTCATAATTTATGGTAGAGGGGGTACGCGTTCGCGCGGCCCCTGCCAATTCAAAAATTTAAAATTTAGTGATTTTG
Scaffold8738	Ensembl_Plants	snRNA	27637	27797	.	+	.	ID=gene:ENSRNA049466185	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=TTACTTACCTGGACGGGGTTGACGGCTGATCAAGAACTATCGTGGCCTAGATCAATGGCTCATATTGCATCTGGTGAGTGCGTTGATCTACCGTCTCTCCAAATGGGAGGGTGGACGTTTTAATTTGTGGTACCTGGGATACGCCTTAGCGTGGCCCTTGC	Scaffold8738	Ensembl_Plants	LTR	27624	27793	483	+	.	ID=2240830	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=CGACGTTGCAACTTACTTACCTGGACGGGGTTGACGGCTGATCAAGAACTATCGTGGCCTAGATCAATGGCTCATATTGCATCTGGTGAGTGCGTTGATCTACCGTCTCTCCAAATGGGAGGGTGGACGTTTTAATTTGTGGTACCTGGGATACGCCTTAGCGTGGCCC
Scaffold40729	Ensembl_Plants	snRNA	12763	12865	.	-	.	ID=gene:ENSRNA049463652	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTT	Scaffold40729	Ensembl_Plants	DNA/En-Spm	12860	12882	271	+	.	ID=355047	repeat_name=DTC_Clifford_3B_080_N22-1	repeat_type=Type II Transposons	sequence=GGGACGAGTTTGCTGCCGCGCT
Scaffold93572	Ensembl_Plants	snRNA	41253	41355	.	+	.	ID=gene:ENSRNA049463417	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACACACAAATCAAGAAATGGTCCAAATTTTT	Scaffold93572	Ensembl_Plants	LTR	41253	41378	665	+	.	ID=2202252	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACACACAAATCAAGAAATGGTCCAAATTTTTTAAGATTTTGCGCGCTGGTCCCT
Scaffold34564	Ensembl_Plants	snRNA	34814	34923	.	-	.	ID=gene:ENSRNA049455456	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=ATATAAAGCCGGACGCTTCTAGCGTCTTTCTTCTAAAAAAAATCTCCCCTTATTGAGAGAGTGGACGTCATAATTTGTGATAGAGGGGTACGCGTTCGCGCGGCCCCTGC	Scaffold34564	Ensembl_Plants	LINE	34884	38617	8376	-	.	ID=1931460	repeat_name=trep804	repeat_type=Type I Transposons/LINE	sequence=TCCCCTAGAGCGCTTTGTTTGGCACCATAGTCCGGCAAATGGCCATTCGGGTGGCATGCTGCTCGGCTTCTGCAGCGCCATGTTCGAGGTGCTGACCTGGGAGGTCGGCACTTTCTTCATTGCTGCCAACATCCGCATGCGAATGTCGCTTCGCGAGCTTGTGATCGTGCAAGTCTATGGACCAGCAGATCACTCACGCTCGGCCGAGTTCTTGGGAGAACTTGAAGCCAAGGTGAGGGTGGTATCTGCAGCTCAAATCCCTTTAATGGTGGGTGGTGACTTTAACCTGATTCGTTCGGGTGCAGATAAAAACAACGACAATATCAATTGGCCAAGGGTGGCCATGTTCAACAACGCTATTGCGTCTATGGCACTTAGGGAAGTGGCCAGAACTGGGGCAAGGTATACTTGGACTAACAAGCAACTAGCCCCCGTGCGATCTGTCTTGGATCGTGCTTTCATGTCTCCGGACTGGGAAGTGGTGTTTCCTTTCTGTTCGCTCCTTGCTGAAACAAGGATTGGATCGGACCATGTTCCCCTCATCTTATCTTCAGGGGAAGATAGGATTCGCCGCAGCCCGCGTTTCTTCTTTGAAACCGCGTGGTTTGAGGTTCCTGATTTCGACACCATCTTTAGGGAGAGATGGTTGCGATGTGTCCAACTCGCAGGCCAGCAACGCGGCCCAATGGAGTTTTGGATCGCTGTCGGGGGTCGCCTCCGCGCAAGCCTAACAGATGGGGTGCGAACCAGGGGCGTGACGACAAGGTCCTCAGGGCGAGGCTACTCGGTGAAATAGCACTTCTCGACAATCAAGCGGACACACAACCTTTCTCAGAGCAAGAATGGGCGCATCGATATGCCTTGGAAGGGCAAGTCGAAGCTCTGGTGCGGTCCGAGGAGGAATATTGGAGGCGTAGGGGAGGCCTCAAGTGGACACTCAAAGGCGATGCGAACACTAAGTATTTCCACGCGTACGCGAACGGCCGGCGCAGGAAATGCTCAATTCTTAGGTTGCAGACGGAGCAGGGGCTTCTTCTACAGCAATCGGAGATTACCCAACATATCTACGACTTTTATATTAGTCTGATGGGGACCGACGAGGCTCAACGCGCGCGTCTGCGAGCGGACGGGTGGCTCCCGTCTCAAAAGGTCCTCGATAGCGAGAACGAAGAGTTGGGGCTCGCGTTTCTCCCTAAGGAGATAGACGATGCACTCCTAAGCATCAAATCAGACACGGCTCCGGGGCCGGACGGGTGGCCGGTGGCGATGGCCATTGCTGCGCGATCCCATATACAATGTGTGTAATGGCTTCATGCGTGGTTTCGTGGACATTGCTAGGTTAAACTACGGCGTGCTCTCGCTAATCCCGAAAGTGTCTGGGGCGGACAACATTCATCAGTACAGACCCATCGCGCTCATTAACGTACCATTTAAAATATGTGCCAAAGGTTGCGCCACTCGGCTCACACCGATCGCTCATCGCACCATAAGTCGTTCTCAATCTGCGTTCATACATGGTAGAAACATTTTGGAGGGGCCGTTAGCTTTGCAAGAGACCCTTCACGAGCTTAAGCGCATGCACGAACCTGCGATTCTCCTCAAATTAGATTTCGAGAAGGCTTACGACCGCGTCAATTGGGATTTCCTCAGTCAGATCCTCACCAGTCGAGGCTTCTCGCCGATGTGGGTGCACCGAGTCATGCAATTGGTCTCGGCAACCGGCGGTATTGGGAAATGGAGAAGTAGGGCACTTCTCCAGGAACAAGCGTGGCTTACGCCAAGGCGATCCCATGTCGCCGCTCTTGTTCAACTTTGTCGCCGATGCGTTGGCGGCTATGCTGCGGAAAGCAACGGAGGCAGGACACATAAAAGGGGTGTTGGGACACCTCATCCCAGGGGGGATTTCGCACTTGCAATACGTGGATGATACGCTATTGTTGTTCCAACCCGACCTCCATAGTGTGGCTATGGTCAAAGCCTTGCTGATTAGCTTCGAGCTCATGTCGGGGCTTAAAATTAATTTCCACAAGTGTGAAGTGATGCCTATGGGCATGGAGGCGTCTGAAGGTAGGCGTATTGCGGACCTGCTCAATTGCAAACTAGGCAAACTCCCGTTTACCTACCTGGATCTCCCGTTGGATGCCAAACGCTTCACGATCGACGGGTGCGCTCCGCTCTGGACCAAGGTGGGAGGGCGGGTATGTCCGTGGAGGGGGAAGTTCCTATCCTCTGCAGCTAGGCTGGTGCTCACGAACGCGAGCCTCTCCTCGCTGCCGCAATTTGCTATGGGTCTGTTCCTCCTGGCAGAAGGGGTTCATGCCAAGATGGACACACCTCGGTCCCGTTTCTTTTGGGAAGGATCGGGACCAAAACGCAAGCACCAGATGGTTAAATGGGCTGCGGTGTGCCGTCCCAAAGACCTGGGAGGTCTAGGGATCACAAATACCAGAACATTGCACTTATATGCAAATGGATATGGAAGCTCTCGCAGGGGGCAACGGGTATGTGGGTTGACCTGTTGCGTGCCAAGTACTTCCCGAACGGGAATTTTTTCGAGGGTGTGGCGAGGGGATCTCCTTTCTGGAACGATCTTCAAGCGGTCCGACCGGCCTTCGCACTGGGAGCCAAGTTCTCCATTGGTAACGGCCATTCGGTCCGTTTCTGGCTAGACCACTGGGTGGGATCCCAACCCCTTTGGTCAGAATTCCAGGACCTTTACGCTCTGGCTGTCAACCCAGAGCAAACTGTTGCCACGGCACTTGCCTCATCCCCTCCGGCGATCCATTTCCGAAGAGAGTTAACGGGAGCAGAACAAGCTCACTTAACGGAATTGCTTGATTGCATTGAGCCGGTATCGCTGTCTACGACCGCGGACACTGTCACCTGGGCCCTCACCCCGTCCGGCAAGTTTTCGGTCAAGTCTCTTTACCGTAAGCTGTGTCAGGGCCCGTCCTTCCAGGTGCCGAATGGCTTGTGGAACGCGCGCCCTCCGCTTAAGATTAAGGTGCTTTTTGGCAACTGTTCCGCAATAGACTGCCCACTTCGGCTAACGTCGCCAAACGCAATGGCCCGTCGACCGGCCTGTGTGCGATAAGTAATGTCACGGAGGATGCGAACCACGTATTCTTCCGCTGTCCGTTGGCACATTTTGCTTGGAGTGCCGTTCGTGCAGCGGCCAACACCTCCTGGGACCCTCGGTCGGCTTCCGACCTCGCGGCCATAGTAGACTCGGTTCAAGGAGGCAACAAACGTGTGCTTTGGAGTTGCATCGGCGCCTTGGCCTGGGCTATCTGGCTCACTAGGAACAAACTAGCGATCGAGGGAATCTTCCCATCACACCCTGCTAACATAATTTACAAATGCAACCTTCTACTGCAGCAGTGGAGTCCGTTGGCGAGGCGCAAGGATGCTGAGAAACTGAAGCAAGCTCAAGATCGTCTTCGCCAGGTCTACGTTTTGGCTAGGGAGCCATCCGCCACTTCTACGCCGTTAAGTGGCCCTTTCGTCACGCGAGCGAGCCTGCGTGCTCTATGCTCTGGCTTCGGGCCTTGTATTTGCATCGCTGCGTGCTTCTTTTGGCCCGTTTTAAAACTCTCGTGTCTCCGCGTCGGCGTGGCCTGAGCCTCCGTGCTCGTGTTCGATGTCCTAAGACTATGTTTGTTACGCTGCCTAAGTTGTGGGCTTTATTAATTTAATATAAAGCCGGACGCTTCTAGCGTCTTTCTTCTAAAAA
Scaffold79377	Ensembl_Plants	snRNA	15530	15626	.	-	.	ID=gene:ENSRNA049454218	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTTTGGGGACATCCTATAAAATTGGAACAATAAAGAGAAGATTAGGATGCCCTGCGCAAAGATATACTCCCTCTGTTCCTAAATATTTGTCTTTTTA	Scaffold79377	Ensembl_Plants	DNA/TcMar-Stowaway	15423	15562	656	+	.	ID=154130	repeat_name=THALOS_AT	repeat_type=Type II Transposons	sequence=TTTTTTAGAGATTTCAAATGAACTACCACATACGGATGTATATAGACATATTTTAGAGTGTAGATTCACTCATTTTGATCCGTATGTAGTCACTTGTTAAAATCTCTAAAAAGACAAATATTTAGGAACAGAGGGAGTA
Scaffold26473	Ensembl_Plants	snRNA	52033	52154	.	-	.	ID=gene:ENSRNA049453807	Name=U5	biotype=snRNA	description=U5 spliceosomal RNA	sequence=AGCTGCGTGGTGGGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACGCCACACATGTGCAGCATACTCTAATTTTTAAAGGGTGGCCTCCTCTCTTTTGAGGGAA	Scaffold26473	Ensembl_Plants	LTR	52035	52154	465	-	.	ID=2243673	repeat_name=LTR_Gm_14_4511	repeat_type=LTRs	sequence=AGCTGCGTGGTGGGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACGCCACACATGTGCAGCATACTCTAATTTTTAAAGGGTGGCCTCCTCTCTTTTGAGG
Scaffold17977	Ensembl_Plants	snRNA	11622	11802	.	-	.	ID=gene:ENSRNA049452149	Name=U4	biotype=snRNA	description=U4 spliceosomal RNA	sequence=ATCCTTGCGCTTGGGGCAATGACGCAGCTAATGAGGTTATACCGAGGCGCGTCAATTGCTGGTTGAAAACTACTCCCTCCGTTCCGAATTACTCCTAGTGTAAACTAATATAAGAGTGTTTAGATTACTAAAGTAGTGATCTAAACACTCTTATATTAGTTTACGGAGGGGGTACTTGTTT	Scaffold17977	Ensembl_Plants	LTR	11620	11743	577	-	.	ID=295458	repeat_name=LTR_AC207940.1_144	repeat_type=LTRs	sequence=TGGTTGAAAACTACTCCCTCCGTTCCGAATTACTCCTAGTGTAAACTAATATAAGAGTGTTTAGATTACTAAAGTAGTGATCTAAACACTCTTATATTAGTTTACGGAGGGGGTACTTGTTTT
Scaffold160512	Ensembl_Plants	snRNA	36766	36882	.	+	.	ID=gene:ENSRNA049451785	Name=U5	biotype=snRNA	description=U5 spliceosomal RNA	sequence=AGCTGTGTGGTGAGCACAAAGCGAGCTATTCTTTCGCCTTTTACTAAAGAATACCGTGTAGACGTCACAATGAGCAGCATACCATAATTTTTAATGGGTCCTTACTCTTTTGAGGAG	Scaffold160512	Ensembl_Plants	LTR	36763	36847	488	+	.	ID=2243674	repeat_name=LTR_Gm_14_4511	repeat_type=LTRs	sequence=GCAGCTGTGTGGTGAGCACAAAGCGAGCTATTCTTTCGCCTTTTACTAAAGAATACCGTGTAGACGTCACAATGAGCAGCATAC
Scaffold20532	Ensembl_Plants	snRNA	56034	56161	.	+	.	ID=gene:ENSRNA049449742	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=ATATTTCCAACATGGCCTAGATCAATGGTTCACATTGCATGTAGTGAGTGCGTTGATCTACCATCTCCTTTGGGAGAGTGGGCGTCATAATTTGTAATAGAGGAGGTATGTGTCCGCGCGGCCCCTGC	Scaffold20532	Ensembl_Plants	LTR/Copia	55227	56045	5200	+	.	ID=1087832	repeat_name=RLC_TAR2_3B_028_J09-1	repeat_type=LTRs	sequence=ACGCCACGCCTCGACGCGCCGCGGGTTGCGGGAATGAGCTGAGCCGATGTCTAAGTTTTTGCCACGCACGACGGGTATACGAAAGGTCATGCGGGAGCTGAAACGTTTTCTGTAGTGGACACTGAATTCGAACGGCGCGCCTCTTCGGCCGCTGCCTGTTCGTTTCGTCTCCCTCCGTTGCTTCACCTCCCGCCGCAGCCTGTTCGCGTCCTTCTCCTGTGCCTATATAAGAGAGGTTGCTCCTTTCCAGAGAGACACACCAGAAGCTCCTCTTCCTCTCGCCACAAAGTTCCGAGCACTGTGCTGCTGCTACGTTCTTCCCCATCCCGGCTTGCGGCGTGCACCACAGGTCGGGACAGTAGGCCTCCGGAACCGCACCTGTTGAGTCCTGCATGGGAGAAGGGTGATAAGGTTTTTGGGGAGCGCTCTGCGCGACTACTGGCTTCTTCACCACGGACTCCGGCGACTACTTCCCCGACGTCGACTACCTCAGCAACGACATGGCTGGAGAGGATGTCGACCCCAAGTCCAGTGCTTCTGCTGCTGCTGTCCCGTACGTGTTCTTGCTCTTTCTGTTAGATGTCATGACACAGTTCTTTGCTCTAGTTTCTGCCCTACATATGATAGGTTCTACTTCATATATGCAATGTTATCTAGTGTCTGTTCTAGATGTGTTTAGTTCAAGTTCATATATGCAAATGCTATTTACTTTCTCTCCGTCAGATTGCATGACTTGCTTTATCGCGGCTATATTAGTCATGCTTTATCTAGTATTTCTGTTAATAAAATCATTTGGTAAATTGCTCATATTTCCAACA
C141461244	Ensembl_Plants	snRNA	1042	1203	.	-	.	ID=gene:ENSRNA049449263	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=TTACTTACCTGGACGGGGTCTATGGGTGATCAATAAGGCTCATGGCCTAGATCAATGGCTCACATTGCACTCGGTGAGAGTATTGATCTACCATCTCCCCTTTGTGGGAGAGTGGACGTTGTAATTTGTGATTGAGGGTGTACGCGTTCGCGCGGCCCCTGC	C141461244	Ensembl_Plants	LTR	1036	1214	672	-	.	ID=2240833	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=CAACGTTAAAATTACTTACCTGGACGGGGTCTATGGGTGATCAATAAGGCTCATGGCCTAGATCAATGGCTCACATTGCACTCGGTGAGAGTATTGATCTACCATCTCCCCTTTGTGGGAGAGTGGACGTTGTAATTTGTGATTGAGGGTGTACGCGTTCGCGCGGCCCCTGCCAAGT
Scaffold221745	Ensembl_Plants	snRNA	1336	1438	.	+	.	ID=gene:ENSRNA049448316	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=ATCCCTTCTGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCACAAGGATGACAAGCACAAATCGAGAAATGGTCCAATTTTTT	Scaffold221745	Ensembl_Plants	LTR	1337	1452	607	+	.	ID=2202281	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CCCTTCTGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCACAAGGATGACAAGCACAAATCGAGAAATGGTCCAATTTTTTTTTGAGATTTTCCA
Scaffold221745	Ensembl_Plants	snRNA	174	276	.	+	.	ID=gene:ENSRNA049448324	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCTGGGACATCCGATAAAATTGGAACGATACAGAGAATATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAATTTTTT	Scaffold221745	Ensembl_Plants	LTR	172	289	657	+	.	ID=2202280	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CGTCCCTTCTGGGACATCCGATAAAATTGGAACGATACAGAGAATATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAATTTTTTTTTAGATTTTCCA
C141424736	Ensembl_Plants	snRNA	524	684	.	-	.	ID=gene:ENSRNA049477668	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=TTACTTACCTGGACGGGGTCGACGGCCGATCAAGAAGGGTCGTGGCCTAGGTCAATGACTTGTATTGCACTTGGTGAGCACGTTGACCTATCATCTCCCCTCGTGGGAGAGTGAACGTCATAATTTGTGATAGAGGAGGTACGCGTTCGCGCGGCCTCTGC	C141424736	Ensembl_Plants	LTR	519	697	673	-	.	ID=2240834	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=GCAGCAGTAAAACTTACTTACCTGGACGGGGTCGACGGCCGATCAAGAAGGGTCGTGGCCTAGGTCAATGACTTGTATTGCACTTGGTGAGCACGTTGACCTATCATCTCCCCTCGTGGGAGAGTGAACGTCATAATTTGTGATAGAGGAGGTACGCGTTCGCGCGGCCTCTGCCAAT
C140946502	Ensembl_Plants	snRNA	347	450	.	-	.	ID=gene:ENSRNA049477377	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GCTCCCTTCGGGGACATCCGATAAAATTGGAATGATACAGAGAATATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGATATGGTCCAATTTGTT	C140946502	Ensembl_Plants	LTR	326	448	619	-	.	ID=2202278	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TCCCTTCGGGGACATCCGATAAAATTGGAATGATACAGAGAATATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGATATGGTCCAATTTGTTTTGAGATTTTCCACGCAAGT
Scaffold87297	Ensembl_Plants	snRNA	14022	14124	.	-	.	ID=gene:ENSRNA049476648	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTGCCTTTGGGGACATCCGATAAAATTGGAACAATGCGGAGAAGATTAGCATGGCCCCTGCGCAAGGCTGACACGCACACATCGAGAAATCGTCCAAATTTTT	Scaffold87297	Ensembl_Plants	LTR	14012	14120	520	-	.	ID=2202270	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CTTTGGGGACATCCGATAAAATTGGAACAATGCGGAGAAGATTAGCATGGCCCCTGCGCAAGGCTGACACGCACACATCGAGAAATCGTCCAAATTTTTGTGAGATTT
Scaffold87297	Ensembl_Plants	snRNA	9493	9595	.	-	.	ID=gene:ENSRNA049476638	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCTGATAAAATTGGAACGATACATAGAAGATTAGCATGGCCCCTGCGCAAGGATGACATGCACAAATCAAGAAATGGTCCAATTTTTT	Scaffold87297	Ensembl_Plants	LTR	9471	9597	635	-	.	ID=2202267	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TCGTCCCTTCGGGGACATCTGATAAAATTGGAACGATACATAGAAGATTAGCATGGCCCCTGCGCAAGGATGACATGCACAAATCAAGAAATGGTCCAATTTTTTAAGATTTTCCACGCAAGTCCC
Scaffold120442	Ensembl_Plants	snRNA	4017	4119	.	-	.	ID=gene:ENSRNA049476561	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCAAGAAATGGTGCAATTTTTT	Scaffold120442	Ensembl_Plants	LTR	3994	4121	626	-	.	ID=2202257	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TCGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCAAGAAATGGTGCAATTTTTTTTAGATTTTCCGCGCAAGTCCC
Scaffold137589	Ensembl_Plants	snRNA	7392	7494	.	+	.	ID=gene:ENSRNA049476429	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTGCCTTTCGGGACATCCGATAAAATTGGAACGATGCGGAGCAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTGTT	Scaffold137589	Ensembl_Plants	LTR	7399	7518	526	+	.	ID=2202264	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CGGGACATCCGATAAAATTGGAACGATGCGGAGCAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTGTTTTGAGATTTTCCGCGCAAGTCCCT
Scaffold137589	Ensembl_Plants	snRNA	202	304	.	+	.	ID=gene:ENSRNA049476422	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTTGGGGGCATCCGATAAAATTGGAACGATACAGAGAAGATTAGCCTGGCCCTTGCACAAGGATGACACGCACAAATTGAGAAATGGTCCAATTTTTT	Scaffold137589	Ensembl_Plants	LTR	202	328	623	+	.	ID=2202258	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=TCCCTTTGGGGGCATCCGATAAAATTGGAACGATACAGAGAAGATTAGCCTGGCCCTTGCACAAGGATGACACGCACAAATTGAGAAATGGTCCAATTTTTTTTGAGATTTTCCGCGCAAGTCCCT
Scaffold137589	Ensembl_Plants	snRNA	6231	6333	.	+	.	ID=gene:ENSRNA049476407	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTTGGGGACATCGGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGAGACGCACAAATCGAGAAATGGTCCAAATTATT	Scaffold137589	Ensembl_Plants	LTR	6229	6357	590	+	.	ID=2202263	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CGTCCCTTTGGGGACATCGGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGAGACGCACAAATCGAGAAATGGTCCAAATTATTTTGAGATTTTCCGTGCAAGTCCCT
Scaffold137589	Ensembl_Plants	snRNA	9716	9818	.	+	.	ID=gene:ENSRNA049476395	Name=U6	biotype=snRNA	description=U6 spliceosomal RNA	sequence=GTCCCTTTGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATATTT	Scaffold137589	Ensembl_Plants	LTR	9714	9828	626	+	.	ID=2202266	repeat_name=LTR_Sb_chr_02_53	repeat_type=LTRs	sequence=CGTCCCTTTGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATATTTTTGAGATTTT
Scaffold4302	Ensembl_Plants	snRNA	10384	10507	.	-	.	ID=gene:ENSRNA049447403	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=GTACTTACCTGGACGGGGTTGACGGCCGATCAAGAGGGGGCCGTGGCCTAGATCAATGGCTCACATTGCACTTGATGAGTGCGTTGGTCTACCATCTCGGGGTACGCGTTCGCGCGGTCCCTGT	Scaffold4302	Ensembl_Plants	DNA/Mite	10507	10763	1632	-	.	ID=2184387	repeat_name=MITE_barke_1_48094_EnSpm2_HV	repeat_type=Type II Transposons	sequence=CTCCCTCCGTTCCATAATGTAGTGCCTATAAATTTTTGAAAAAATCAAACCTTGTAAACTTTGACCAAGTTTGCAGAGAAAAATATTTACATTTAGAATGCCAAACATATATTATTAGATTCATCGTAAGATGTATTTTCATATTTTATATATTTGACATTGTATACATAAATAGTTTTCTCTATAAACTTGGTCAAAGTTTGTAAAGTTTGAATTTATAAAAAATCTGTAGGCACTACATTATGGAACGGAGGGA
Scaffold37354	Ensembl_Plants	snRNA	56994	57154	.	+	.	ID=gene:ENSRNA049447310	Name=U1	biotype=snRNA	description=U1 spliceosomal RNA	sequence=TAACTTACCTGGACGGGGTCGACGACTGATCATGAAGAGTCGTGGCCTAGGCTAGTGGTCCACATTGCATTTGGTGGATGCGCTGGCTTACCATCTCCTCAAATGGGAGAGTGGATGTCATAATTTATGATAGAGGGGGTACGCGTTTGCGCGGCCCCTAT	Scaffold37354	Ensembl_Plants	LTR/Gypsy	56753	56999	1712	-	.	ID=1644110	repeat_name=trep2224	repeat_type=LTRs	sequence=AAGTTATCAAATTCATCCAGGCATTGACTAGCAGATTTATTATAAAGAGTATCACTTTCATCGAATATATAAAGAGAATTTATCTTTACTACCTGTGTCGGGGTGTCGAGCCATGTATTTCTTCAATAGGTGATAAATTCTTAACATCTTCAGATTTAATATCATTTTCTTTCATAGATTTCTTTGCCTGTTGCACATATTCAGGACTGAGGAATAGAATACCTCTCTTCTTCGGAGTTGCCTTAG
Scaffold2102	Ensembl_Plants	rRNA	176499	176663	.	+	.	ID=gene:ENSRNA049479711	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TTGTGAAATGACTAGTTGTAGGATAAGTGGGAGCCCTCACGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGGGTCGGAAGCGGGGCATGTCCCCTCCTTTTGGCTCCAAGGCCCGGTCTTACCGGGCCGATCCGGGCGGAAGACNN	Scaffold2102	Ensembl_Plants	LTR/Gypsy	176042	176661	4798	+	.	ID=2210347	repeat_name=LTR_Al_scaffold_0003_560	repeat_type=LTRs	sequence=GAACCCGTCGGCTGTCGGCGGATTGCTCGAGCTGCTCACGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACCGGGAATCGCCCCTTCGGGGGCTTTCCCCGAGCATGAAACAGTCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCAGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGATTTGTGAAATGACTAGTTGTAGGATAAGTGGGAGCCCTCACGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGGGTCGGAAGCGGGGCATGTCCCCTCCTTTTGGCTCCAAGGCCCGGTCTTACCGGGCCGATCCGGGCGGAAGAC
Scaffold2102	Ensembl_Plants	rRNA	143112	143267	.	+	.	ID=gene:ENSRNA049479690	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=GACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATACGATACCTGGTGTCAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGGCCGAAGGCACGCCTGCCTGGGCATCA	Scaffold2102	Ensembl_Plants	LTR/Gypsy	143085	143269	1184	+	.	ID=2210345	repeat_name=LTR_Al_scaffold_0003_560	repeat_type=LTRs	sequence=GTGTTGCAAAGCTATTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATACGATACCTGGTGTCAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGGCCGAAGGCACGCCTGCCTGGGCATCACA
Scaffold2102	Ensembl_Plants	rRNA	175057	175535	.	+	.	ID=gene:ENSRNA049479655	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=CTCTTAATTACTGATTAACATGGGATTTTTTAGGGAGTCTGTAATTAGTATAGGTATAGATAGATTGGGGACGCGACGTCCTCGACCTATTCTCAAACTTTAAATAGGTAGGATGGCGCGGCTGCTTCGGTGAGCCATGCCACGGAATCGGGTGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCCAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGATTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCCGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGCTGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCCNNNNNNN	Scaffold2102	Ensembl_Plants	LTR/Gypsy	175113	175528	3241	+	.	ID=2210346	repeat_name=LTR_Al_scaffold_0003_560	repeat_type=LTRs	sequence=AGATAGATTGGGGACGCGACGTCCTCGACCTATTCTCAAACTTTAAATAGGTAGGATGGCGCGGCTGCTTCGGTGAGCCATGCCACGGAATCGGGTGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCCAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGATTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCCGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGCTGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCC
Scaffold2102	Ensembl_Plants	rRNA	110501	112109	.	-	.	ID=gene:ENSRNA049479645	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CTGGTTGATCCTGCCAGTAGTCATGTGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACCAATTTGAACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTACGTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTTTGGGAGGGGCGCATTTATTAGATAAAAGGCTGGCGCGGGCTCTGCTCGCTGATCAGATGATTCATGATAACTTGACGGATCACATGGCCTTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTTGATTGTAGGATAGGAGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGATCCCGAGAAACGGCTACCACATCCAAGGAATGCAGCAGACACGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATACATAACAATACCGGGCGCATTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTGAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCACAGTAATTCCAGCTCCAATAGCGTATATTTGAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCATGGCGAGCACCGACCAACTCGACCCTTCGGCCGGCATCGCGCTCCTAGCCTTAATTGGCCGGGTCGTGTTTCCGGCATCATTACTTTGAAGAAACTAGAGTGCTCAAAGCAGGTAGTCGCTCTGGATACAGTAGCATGGGATAAAATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGAGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTATCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCTGGGGGGAGTATGGTTGCAGGGCTGAAACTTAAAGGAATTGACGGAAGGGCGCCACCTGGCGTGGAGTCTACGGCTTAATTTGACTCAACACGGGGATACTTACCGGGTCCAGTCATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTTTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTAGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGGCAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGTGAGGGAGTCCTGGATTAGGGGGTATCCGGATAGCTGGACTATATACCTTGGCCGGACTGAT	Scaffold2102	Ensembl_Plants	LTR/Gypsy	101751	110560	61031	-	.	ID=1779466	repeat_name=RLG_Fatima_3B_046_D24-4	repeat_type=LTRs	sequence=AGGGAGTCCTGGATTAGGGGGTATCCGGATAGCTGGACTATATACCTTGGCCGGACTGATGAACCATGAAGATACAAGACTCAAGACTTCGTCCCGTGTCCGGGTGGGACTCTCCTTTGCGTGGAAGACAAGTTTGGCGATCCGGATAGTAGATCTCCTTCTTTGTAACCGACTCCGTGTAAACCCTAGCCCCCTCTGGTGTCTATATAAACCGGAGGGTTTGGTGTGTGTAGGGACATTCATAATCATCATAGGCTAGCTCTTAGGGTTTAGCCTCTACGATCTCGTGGTAGATCAACTCTTGTAATACTCATATCATCAAGATCAATCAAGCAGGAAGTAGGGTTTTCCCTGCATCGAGAGGGCCCGAACCTGGGTAAAACATCGTGTCCCTTGCCTCCTGTTACCATTAGCCTTAGACGCACAGATCGGGACCCCCTACCCGAGATCCGCCGGTTTTGACACAGACATTGGTGCTTTCATTGAGAGTTCCTTTGTGTCATCGCTGTAAGGCTCGATGGCTCCTTCCATAATCAACAACAACGCGGTCCAGGGTGAAACCTTTCTCCCCGGATAGATCTTCGTGTTCGGCGGCTTCGCACTGCGGGCCAATTCGCTTGGCCATCTGGAGCAGATCAATAGCTACGCCCCTGGCCATCAGGTCAAGTCTGGAAACTTGAAATACACGGCCGATATCCGCGAAGACTTGATCTCCAACGGATTCGGGCCTGGACCAGGATCGCCGAACAGTCACGACGAGCATGGTTCCGACCAGCTATCGGACAACACTCAGGGTATCGCACCTGCAGAAGCCCCGGACCTAAATCCGGGGCAGATTGCGTCGTCCGAGGACGGGTGGATGGACCCCGCCCCGGAGGTCGCACGCTCATCGGCGGGAGAGCCAAACACAGACTTCACCCCCACGGAAGCCTGTGACTCCGGACCCCTGGACCTGTGTCCGGCTGTAGATCCCAGACCGCGCGCCACCGAGCCCGCCAATTCCAGCTGGGCTCCGGTAATGGAGTTTACCGCTGCGGATATTTTCCAGCACTCACCCTTTGGCGACATGCTGAACTCATTAAAGTCTCTCTCTTTGTCAGGAGACTCTCGGCCGAACTATGTCCGGCTCGAGTGGGAAGCAGGCGACGAGGGAATTTGTTGCCCACCCACCACCCACTTCATAGCCACTGTCGACGACGTAACAGACATGCTTGACTTCGACTCTGATGACACCGTTGGTATGGACGTCGGCACAGAAGACGATTCGGAAGCACCATCGATGGGGCACTGGACTGCCACCTCGTCATATGATATATACATGGTGGATACTCCTAAGGAGGAGGACGACGACAAAACGGAGGATAAAACCCCGGACAAAAGCCAAAACGACGACGCAGACGCCGCACTAAGTCCAGCCACAGTAAGCATAGCAATAACAGCGCTAGAAAGATCGACACCCCAGTCAACTCTGAAGGCAACAACGACCATATGGACCCAGCGATGGAGCAGGATGAGCCAGGTCACGCCGAACAAAGCCCGGAGCAGACACGCGATCACAGTGATCCCGAGGGACGAACTCATCAAACCACCCCGGGACAGGAGCATAGTCCGGATGACGACGACGACGCATTCATCATCCCGGAAGCACGTGGGGAACCAGATAACATCCACAGAAGGCTCATGGCCACTACGAGAAGTCTAAAGAAGCATAAGAAAAGGCTTAAAGCCGCACAGGAAACACTCAATTGCAGATGGAATAAAGTGCTAGACACTGAAGAAAAATACGGCGATGATCGCCACACAAAGATCTACCCAAAGGGCAAGCTGCTGCCAGAATTCGACGACAAAGCCGTTCCACCGAAGAAGAATACATGCAGACGGCCGGACCAACCTCCCCATAACCATAATAGAGCAGCTACTGACGCCACGCACGATCTACGTGGGCTCCTGGACAAAAAGGCCGGCGCGACTAGGTCCATCTACGGATCTAGAGGATACGCCCCAGCGCAGGACTATGGTTATAAAAATGATCGGACTGATCGAGTACCAGTTCGGAATCAGCACTGGACACAACAATAGCCGGCGACACGCCACAACACGTCCAGATACAGAGGGGCTGCTCACCCCCTGTGCTTCACCGAAGAGGTACTGGACCACGAATTCCACAAGGCTTTAAACCTGTGAACATAGAGGCATATGACGGAACGACAGACCCCGGGGTCTGGATTGAGGATTTTATCCTGCATATCCACATGGCTCGTGGGGATGACCTCCATGCCATCAAATACCTTCCCCTCAAGTTGAAGGGACCAGCTAGGCAGTGGTTAAAAAGCCTCCCCGAAAAATCAATCGGAAGTTGGGAGGAACTAGAGGATGCCTTCAGGGCCAATTTTGAAGGGACTTACGTCCGACCTCCGGACGATTTAAGTCACATAATCCAACAACCCGGAGAGTCCGCCCGCAAAGTTTGGAACAGATTCCTCACTAAGAAGAATCAAATTGTCGATTGTCGGATGCCGAAGCCTTAGCGGCTTTCAAGCACAGTATCCGGGATGAGTGGCTCGCCAGACACCTCGGCCAAGAAAAGCCGAGGACAATGGCAGCCTTAACAAGCCCTATGACCCGCTTTTGCGCGGGTGAAGACAACTGGTTGGCCCGTAGAGGCACCAGCGACCCAAGTAGATCCGAAATTAGGGATGGCAACGGGAAGCCACGGCGCAATAAAAATAAACGTCGAAACAAGGAAGCAAGTCCGGACAGCATAGCGGTCAACGTCGGATTTAGGGGCTCTCGGCCCGGTCAACAAAAGAAGCCATTTAAAGGCAGCAAAGAGGGACTGTCCGGCCTGAACAAAGTCTTGGAGAGACTATGCCAAATTCATGGCACCCCCGAAAAACCTGAGAACCACACTCACAGAGATTGCTGGGTCTTCAAGCAGGCCGGCAAATTAAATGTCGAACACAAGGGAAGGGACACACCAAGTGAAGACGAGGATGAGCCTCGCCAGCCGAACATTGGGGGACAGAAAGAATTCCCACCAGAGGTAAAAACAGTAAACATGATCCACGCAACTCACATAACCACGAGAAGGCGTGAACGCGCGCTCAGAGACGCATACGCTATAAAGCACGTTGCCACTAATAACCACTGGTCGTCCTGCCCGATCACCTTCGATCACAGGGACTACCCGACTAGTATGCGGCACGGAGGATCAGCTGCCTTGGTGCTCGACCCAATAATCGACGGATACCATCTTACTCGCGTCCTCATGGACGGCGGCAGTATTCTTAATCTAATATACCAGGACACTGTCCGCAGGATGGGGATAGACCCATCCAGAATCAGCGAAAGTGCCACCACCTTTGAAGGGGTGATACCAGGCGTTGAAGCTCACTGTAGGGGCTCCCTCGTACTAGAGGTGACATTCGGTTCCCCAGGTAACTTCAGAAGCGAAGAACTACTCTTCACCATCGCCCCCCACCAAAGTGGTTATTACACATTGCTCGGGAGGACGGCCTTCGCCCGCTTCAACGCAGTACCTCACTACGCCTATCTTAAACTCAAGATGCCCGTTCCACGTGGCGTCATCACTGTCAACGGAAAGACGGAGCGTTCCCTACGCACGGAAGAGTATGCGGCGGCTCCAGCAGCCGGACTCTAAGCGCCCTCTAATACTAGAACGCAGTACTGGTCGTTAAGACCACGGACACGGTTAGACGAGTCCGGCAACCTAGATAAACCTGATCTGGGCGCCACACATGTAATCCCATAGAGGACACCAGGGGCTATAAACATTTAATACCGCCCAGCCCTTGGCTTGACCTTAGTAACAGGCCATTTCCACTCTTTCTATCCATCGGTGATAGCCAAATCTTCGCACGCTTACATCATACTCTTTTACATGAGTTTTTCTTTTTTACAGACACCATTCGTGCGACACCCTTCCGGGACACGGCACAACGGAGACAAAGGCGCAGACGTGCAGTAGGGCCCCGCTCAAAGGTTTCTCTTTAGATTAAGCCCCTGTGTAAACCTTCTTTACTGTCTCTTGTTGCTTACACATCCCATGGGTACTACACCCACAGAGGATACTGCCTTTATTGGCATTTCGCCACGACAGACTAATGCACGTACCTGGAAATACTGGGTTCATAATAAAGGGCGTTACTCAGCCCGATATATGTTATAAAGTCCGAATACCTTCGGGAGTGTTCGGCGTCGCGAGTATGGCCTTATATGCATCATCTCCGAATCATGTCTTTGGTCAAATGTTGGGTTTGCCCGGCTCCTGGGTTTGCTGCCTTATGTTCCGTTCTTATCGGCTAAGGCGGCCAAAGGAGAACTACTGCGATTGTGCCCTGGTTATTCCGGATGAGCACCTCAGTAGAGAAAGCCGAAAATTGACTATCATGATACAGCGAGATACTGTTCAACCACTCGAAGACTTATCGGAATCTTTAGGATTCCTCCGCATTAACGAAGGACCGTTTCCCGTTCATGTACATATGCGCCCGTATTCGGATGCACGCAAAGGTACAAGGGGCTACATAGTAGCCCCACCGTCAAACTCCTATGGCTAAGTGAAAGTGTTACAGCTATATAGTCCGGTTGCCTAGTTCGCCGTGCAATCACCTCCTTAATGGACCAAGATGTTGGATAAAGTGTGATTACGCACATTTTCGCGAACACCCCCGCATTGTACGCGTGGGGGCTGAAGCCAACGACTGCTATCTTTCAGATTACATATATGCATAAAACGGCCGCACAGGAGGCACAATAGCACTTTTGGGCAACAAGTATAAACATAGCCTCATAATTAAAGTTGTTTTTACAATAAAATGAGTTGTCACTCGAACATGACATTCTTCGAGCACTGAGCCTCTATTAAACGAGCACCTTCTGCTACCTGCTCCAAGACATGCTCGGCAGGTTCCTGGCTTCCCGCCGGACTCTGGGTTGCAATAACGGTGGCATCCATATCCGTCCAATATGCCTTAGCGCGGGCAAGAGCCATCGATGCACCCTCTATGCACGCCGACCTTTTCATGGCATCGATTCACGACACGGCACCAAGGAATTGTTGCACTTAACCAAAATAATTGTCCGGCTTCGGCCCATTCGCCCATCGATGGTCTATTACAGACCTCATTGCAAGACCAGACAACCTATGGAGCTCGGCCATAGCAGCCATCTTCTCGCTCAATGGCAACGGGCGCGTTGGAGCATTGAATTGCGACCAGAACAACTTTTCCACTTCATTATCCTTCTGATCCTCGAAAAACTTGGCCGCGTCAGCCGCACTCTTCGCCAGATCCGCATACGCGTCTGAAGGGCTCCAGCGTTGATCCAGAGGAACATACTTCGGATCTAAGAACTTCATCCGCAACAAATAGGGGTTTCCAGCCGCGATTTCTCTGGCCTGTCGAAGCTCCTCCCGCGCATCCCTCATTTCGGAACGCGTCTCCTTGGCCACATCAAGGGCCTTCTTCAGGTCAGCCGAATTAGCCTTCTTCTCCTTTTCAAGGAGCTCATACCGGTCGACGGCATTTTTTAACTCCACAGCCATCTCGGCTATTTTGTCTTCGCTTCGGCGACGAGCAGCCTCTTCGGCTCTCAACTCTTCGGCCGCCTTTAGGGCAGCCGCATCGCTGGCCCGGGCTTGTTCCTTGGCCAGGGCAAGTTCTGCCCTCAGGGCTTCCACGGCAGCAGCTCCGTCTACAGTCCAAGTATATAACATTAATATAATACTCCTCTCAGTTTTTCCCATAAGGAAAGTAGAGCACATACCTTGTGACTCGTTAAGCCGCTGGTTCACAAGTGTGATATCGGCATCAACAACTCCAATCTGTCGCCTTAGTTCGGCGACTTCAACGGACTGGTCGGCTACCGGACCCTTCGTCACCTATGCATACACACAGTATGATCATTACCCAACGGTGTGATCCTCCGTTTGCCGCCTTGGGCTGGCAACCAGAGTCTCAGGGTCTACTATACATATGGAGCACACCTAGCGCGTGCGCCACAATCAAAGAAATTATATATTTCGTTACATACCTCAAAGCCTCTAAGCAGGCTTGTGAAAGCCTCATTCAACCCGCTTGTGGCGGATGAAATCTTCTCAAGCACCGTGCTCATCAATGAACGATGATCCTCCGAGAGAGCAGCTCGCTCCAGAAGACCCGTCAGCGTATCCGACCGATCGCCGAACTGTGCCGAACCTTTCTTATCGCCCCCCGTAGGAGCCAAATGCTTCGGGCTCAGGGCGGCCGAAGCGCTAGCTTCTGGCCTCGGCGAATCCGGACCTCTCCGTGACAACACCTCCAGGTCACCCGCCTCATGAGGCGGAGAGGTTGGCGGGGTTTCACTCTCCATCATCTCCGGAAGAAGATGCCCCGAAGATGAACTCTGTCGAGAAGAACCGCTTGCCGGACTGCAAAGAATGAATCCTGGTTACTATTCTCGGAGGAGGAAGCACTAGCTTTGTATTTATGATTAAGTTACGGCTCGGTTGAGCGCTGGCCCATTTGCGGGCATGGCGCGGCGAGGACGCCCTTCGGGGCAGGGCCCTCATCAGGTGAGGTTTTGTTCCCTTCTTTGGGCACCTCCGTCTCGGAGTCCTCGGAGGCGGCCCTCTTCTTCCCGCGAGGGGAGGAGGCCTTAGATTCCCCTTCCCAACTATCCTCCTTTGGGGAGGTAGCAATTCCCCCGGTTTGGATGTGCAATGTGTGAAGTTCTGCTTCTCTGTTCTTCCCTTCGCCTTTCCCTGAGGGCACTTTACTTAGTACACGACCAAGCATCTTGGCTATGGCGGGACTAGGCGAGCCCTTGGGAAGTGGCGCCGGACACCTGATTCTTTCCGCCTTGCTGAGCCATTCCTGGCCACGAAGAATTTTTCAGAATCGTGTTATGATAAATATAAATAAGGTGTTCGGTTTCTTACTTACTTGGGTGTCTGGGTGGTTGCAGCTCAAGCCCGCATCCTCGGTGGTGTCCAGACATTTTACTTGTGGTCCAAAGAATAACTTACACATCCGTTCGAGCGTCAAGCCGAAGAAGTGCAGAATAGTCCGCGGACCTTCCGGATTGAACTCCCACATCCGAAGAGGCCGACGTTTGCATGGCAACATCCGCCGGACTAGCATCACCTTAATTGTGCTGACAAGGCTAATGTCCCTCTCAAGAAGCTCCCGGATGCGGCCCCGCAATGTTGGTACATCATTATCAGGCCCCCAATCCCGTCCTACATTGGCCCATGACGCCAGTTGAGGCGGAGGGCCCGAACGGAAGTCGGGGGCGGCCACCCACTTTGTGCCCCTGGGAGCCGTGATGTAAAACCACCTCCGCTGCCATAGATCGGATACCTCTGGGAAGGAGCCCACTGGCCAGGGGGCGTCGGCGTTCCTGCTTATTACAGCACCTCCGCGTGTCGCCCTTCAATCATCTTCGGCTTTACATTGAAGGTCTTGAGCCATAAGTCAAAGTGTGGGGTGACATGGAGAAAAGCTTTGCACACAACGATGAATGACGAGATGTGAAGGATGGTGTCCGGAGCAAGATCATGAAAATCTAGCCCGTAATAGAACATGAGCCCTCCCACAAAGGGACCAAGGGGGAAGCCTAAACCGCGGAGGAAGTGAGAAACAAATACAACGCTCTCGTTGGGCTCGGGAGTAGGGATGACCTGCCCTGGAGCAGGAAGCCTGTGCTGGATGTCGACGGTCAGATATTTGACCTCCCTCAGCTTCGCGATGTTCTCCTCTGTGACCGTGGAGGCCACCCACCGACCGTGAAGGTTGGATCCGAACATGATTGAAGATCCGCAGTACCTAAGCTTGGGCTCGGGTGTTGGAACTCGAGATGCAAGACGGCGCAAGCGTGGTAGAAAAGAGGGATAGGCCTCGGCCCCTTTATAAAGAGGGTGAATATCAAGCGTCCTCGGCGTGACCACGCGGGACTTACCTAAAAACACGGAGTCATACCAACAGGCGTCGTGGGGTTGCACGCCCCCGTATTGATGGCAGATCCCGTGATAAGAGGAACACGATCTCTGTTCTGATGAGGCGTGCCAATGAAACCGCCTCGTAACACATATCGAGGTAGGCTGAGAAAGACCGGTCCGTGTCGGGCCAGGCCACAGGGTGCGCCGTTGGAAAAAATTTATTGTCAGCGGATCAGATTTGTGAAGTGTTTGGCTCTCTACGGCGGAGTGCGGGGATTATCTCGCAGAGCCGGACATGATCCTTAATCTACTTTGGATTATTCGGAGATGGAACCCGCCTTGCAATGCCAAAGACAAACTGCGTGCCGGACTCGTCGTCATTGAAGCTTGGTTCAGGGGCTACTGAGGGAGTCCTGGATTAGGGGGTATCCGGATAGCCGGACTATATACTTTGGCCGGACTGATGAACCATGAAGATACAAGACTCAAGACTTCGTCCCGAGTCCGGGTGGGACTCTCCTTTACGTGGAAGACAAGTTTGGCGATCCGGATAGTAGATCTCCTTTGTAACCGACTCCGTGTAAACCCTAGCCCCCTCCGGTGTCTATATAAACCGGATGGTTTGGTCTGTGTAGGGACATTCATAATCATCATAGGCTAGCTCTTAGGGTTTAGCCTCTATGATCTTGTGGTAGATCAACTCTTGTAATACTCATATCATCAAGATCAATCAAGCAGGAAGTAGGGTTTTACCTCCATCGAGAGGGCCCGAACCTGGGTAAAACATCGTGTCCCTTGCCTCCTGTTACCATTAGCCTTAGACGCACAGACCGGGACCCCTACCCGAGATCCGCCGGTTTTGACACCGAC
Scaffold79880	Ensembl_Plants	rRNA	3404	3522	.	+	.	ID=gene:ENSRNA049479148	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AGATGCGATCATACCAGCACTAAAGGACCGGATCCCATTAGAATTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGATGACCTCCTGGGAAGTCCTCGTGTTGCATTCC	Scaffold79880	Ensembl_Plants	LTR	3433	3506	306	+	.	ID=2115894	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=GATCCCATTAGAATTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGATGACCTCCTGGGAAGT
Scaffold79880	Ensembl_Plants	rRNA	6424	6542	.	+	.	ID=gene:ENSRNA049479129	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCAGATCCCATCAGAACTCCGAAGTTAAGCTTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTGCTGGGAAGTCCTCGGGTTGCATTCC	Scaffold79880	Ensembl_Plants	LTR	6454	6539	306	+	.	ID=2115897	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=ATCCCATCAGAACTCCGAAGTTAAGCTTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTGCTGGGAAGTCCTCGGGTTGCAT
Scaffold79880	Ensembl_Plants	rRNA	6842	6960	.	+	.	ID=gene:ENSRNA049479126	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCTGAAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGAATTCC	Scaffold79880	Ensembl_Plants	LTR	6871	6944	288	+	.	ID=2115898	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=GATCCCATCAGAACTCTGAAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
Scaffold79880	Ensembl_Plants	rRNA	7735	7853	.	+	.	ID=gene:ENSRNA049479106	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCAATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGATGACCTCCTGGTAAGTTCTCGTGTTGCATTCC	Scaffold79880	Ensembl_Plants	LTR	7764	7838	292	+	.	ID=2115899	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=GATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGATGACCTCCTGGTAAGTT
Scaffold79880	Ensembl_Plants	rRNA	5570	5688	.	+	.	ID=gene:ENSRNA049479094	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGTCGAGAGTAGTACTAGGATGGATGACCTCCTGGGAAGTCCTCGTGTTGCATTCC	Scaffold79880	Ensembl_Plants	LTR	5599	5672	316	+	.	ID=2115896	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=GATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGTCGAGAGTAGTACTAGGATGGATGACCTCCTGGGAAGT
C135648261	Ensembl_Plants	rRNA	27	118	.	+	.	ID=gene:ENSRNA049478454	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAACGAGAGTAGTACTAGGATGGGTGACCTCCTCGGAAGTCCTCGGGAAAGGGTTTC	C135648261	Ensembl_Plants	LTR/Copia	1	209	1736	+	.	ID=2084476	repeat_name=trep3125	repeat_type=LTRs	sequence=GTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAACGAGAGTAGTACTAGGATGGGTGACCTCCTCGGAAGTCCTCGGGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCAAGCCAACGTAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAG
Scaffold24079	Ensembl_Plants	rRNA	13281	13371	.	-	.	ID=gene:ENSRNA049478340	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCAAGAGTAGTACTAGGATGGATGACCTCCTGTGAAGTCCTCATGCAAGGGTTT	Scaffold24079	Ensembl_Plants	LTR/Copia	13230	13458	1442	-	.	ID=2084463	repeat_name=trep3125	repeat_type=LTRs	sequence=GACAACTTCGTCTATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTATGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCAAGAGTAGTACTAGGATGGATGACCTCCTGTGAAGTCCTCATGCAAGGGTTTCATATCTACCCTACCCCAACTTGTTTGGGACAAAAGGCTTAGTAAGTAAG
Scaffold73144	Ensembl_Plants	rRNA	11173	12191	.	-	.	ID=gene:ENSRNA049478298	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGGCGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAACAGGATGGTACTGACTTTCATACAGGTGTTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGTGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCCTAAGGAGAAATTGCCACCGAGTGACGTGCCAGCGCTACTACTTGATTGAATGCCAGCACGTAGCTGTGCTTTTAGCAAGAATTTCACCATTGGGAGCCAGTGCCTTTTGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGTCCAAGACCCACGGAGACCTACCTATAGTGACGTCAAAGTACTAGTGAGCATGGAGGTTTGGTTGAAATTGGTTACGACGACGTCGAGTTGGCGGCAGAGGAAGACTCGGCATGAAGGCCAGAAAATGGTGTGGAACGTAGTGGTAATAGTACGCGCCCCGCTTCGAAACAAAGAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCTGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGTGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTACAACTCGGGAACATGAAGTTAAAATCGCTAGTAATCGCGGATCAACATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCACAAAGGCCTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTCGACTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCTC	Scaffold73144	Ensembl_Plants	LTR	12079	12201	518	-	.	ID=2131804	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=CACTCTGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGGCGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA
Scaffold77162	Ensembl_Plants	rRNA	11358	11449	.	-	.	ID=gene:ENSRNA049478117	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold77162	Ensembl_Plants	LTR/Copia	11308	11644	2735	-	.	ID=2084462	repeat_name=trep3125	repeat_type=LTRs	sequence=AGGCATAGCCGGTACCAAGCCTGGGTAAAGGAGGAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGGCAAAAGGCTTAGTAAGTAAG
Scaffold21511	Ensembl_Plants	rRNA	19408	19649	.	-	.	ID=gene:ENSRNA049477856	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CGGGTCATACCGCGGGGTATATCCCTGACAAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTCGTTGGTGGAGTGATTTTTCTAGTTAATTCCGTGAACGAACGAGACCTTAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGATTCCTAGAGGGACTATCGCCGTTTAGGCGACGGATGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG	Scaffold21511	Ensembl_Plants	LTR	19620	20385	4848	+	.	ID=1996950	repeat_name=LTR_AC216582.1_214	repeat_type=LTRs	sequence=GTCAGGGATATACCCCGCGGTATGACCCGGCCGGAAGTATGACCCGGCTGGACCTGGCGCTTCATCGTGACCCGCCGGAGGATTGGCGACTCATAGGTCTCGCAGTTCACTCGTGTGACGACTCACGAACCTGGCGACTTAATGATGGCCCCGACGGCGGGTCAGACAGAAGACTAGGCCCAAAGCCCAGAAGGCCGGCTCATGTTATGGTGGGCCGGTTTATGAAGAAAGGCATAAAGAATATTCTCCTACCAAGGAAGCGAGACCCGGACTTGTATTCAACTTGTAAGAAAAGATAGACTAGTCCTAGTCCTACTAGGACTCCACATGTAACCCGCCCCTCTAACTTATATAAGGAGGGGCAGGGCACCCCAAAGAGAAACAAGCGACAGGGAACAATCTCTAGGGCTAAACACCGAGAGCCGGAGCGGGTGACTCTCCTGTGATCATAAAGAGACCTAGCCTCAAACAGCACGTAGGGTTGTTATCGGATGATATTTCCCGGGGCCCGAAGCTGTCTAAACCCTTGTCTTCTCCGTTGATCCGCCCTGCATCTCTCATCCCAATCAACCCCTCTCAAGCTACTACATAGATGCGCTGTCCTCACTACTAAGTCCTCATGCTAAGGACATCTGCCGTGACAATTCCACGACAGTTGGCGCCCACCGTGGGGCCTGTATACAGTGGTGTTGAGTTCTTGAAGGGATTTTTCATAGGTCGAGAAGCTTGTGATGAGATCAGAGAACAGGAACAGAATGATCGTGG
Scaffold2984	Ensembl_Plants	rRNA	47878	48454	.	-	.	ID=gene:ENSRNA049477725	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AAAATGCCTTTGTTGGCTGTCATTATTCGAGTGCGCCTTCTCTCAAAATGGTCACGAAAAATACCACAGCATGTCGGGTGCCATTCCATGATAGCATGCCAAGTTTCATGAATTTCAGACGAGTTTTAGATTTACTAGAATTTAAAAACAAAGTATCTCATCGTTTTGCCGAGAATCAACGGTGCCCTGGTGTTTGAAATTCATTCCCATTTCTTGAATGGGACCTAAGCATGCACCCAAGGACACAGATTTGATTTTTCAACCAATTTATATGCACTGGAGCATGTGCATGTAGTTCGAATTTGAATTCTGCACATAAATGCATTGAAAACTCAGTTAATGCATAAAGATGTCCAAACGGACCCCGAAAAATCACAAAAATTGACACAACACTCCTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGTTGTGCGACTCGACCCGTGCAGTATTGTTGTT	Scaffold2984	Ensembl_Plants	DNA/En-Spm	48057	48652	4258	+	.	ID=642805	repeat_name=DTC_Pavel_3B_034_E06-1	repeat_type=Type II Transposons	sequence=AGGAGTGTTGTGTCAATTTTTGTGATTTTTCGGGGTCCGTTTGGACATCTTTATGCATTAACTGAGTTTTCAATGCATTTATGTGCAGAATTCAAATTCGAACTACATGCACATGCTCCAGTGCATATAAATTGGTTGAAAAATCAAATCTGTGTCCTTGGGTGCATGCTTAGGTCCCATTCAAGAAATGGGAATGAATTTCAAACACCAGGGCACCGTTGATTCTCGGCAAAACGATGAGATACTTTGTTTTTAAATTCTAGTAAATCTAAAACTCGTCTGAAATTCATGAAACTTGGCATGCTATCATGGAATGGCACCCGACATGCTGTGGTATTTTTCGTGACCATTTTGAGAGAAGGCGCACTCGAATAATGACAGCCAACAAAGGCATTTTGAAAAAATAGCTGCCACTTTAATATATCAAATGTTTGTATAATTCAAACCATGTGTGTTCTGTTAACCATTCACGTGACGTCACATGTCTTGGTTTTAATGGCTATAGGAGGTGCCGTGTGGATAGCTGCTTGACTGAACGAGAGGCGTGCGAGTGCAGTCCGGTGCACAGGCTCACCGGGAAGCGTACAAGCTGTTC
Scaffold2984	Ensembl_Plants	rRNA	47878	48454	.	-	.	ID=gene:ENSRNA049477725	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AAAATGCCTTTGTTGGCTGTCATTATTCGAGTGCGCCTTCTCTCAAAATGGTCACGAAAAATACCACAGCATGTCGGGTGCCATTCCATGATAGCATGCCAAGTTTCATGAATTTCAGACGAGTTTTAGATTTACTAGAATTTAAAAACAAAGTATCTCATCGTTTTGCCGAGAATCAACGGTGCCCTGGTGTTTGAAATTCATTCCCATTTCTTGAATGGGACCTAAGCATGCACCCAAGGACACAGATTTGATTTTTCAACCAATTTATATGCACTGGAGCATGTGCATGTAGTTCGAATTTGAATTCTGCACATAAATGCATTGAAAACTCAGTTAATGCATAAAGATGTCCAAACGGACCCCGAAAAATCACAAAAATTGACACAACACTCCTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGTTGTGCGACTCGACCCGTGCAGTATTGTTGTT	Scaffold2984	Ensembl_Plants	DNA/En-Spm	47706	47884	1134	+	.	ID=1184374	repeat_name=DTC_Pavel_3B_063_D03-2	repeat_type=Type II Transposons	sequence=GTAAAGTTTAAGTTCCACTTTGGGTCGAGTTGGGTTAGTATAGCTTCTCACAAACTAGAGCTTCTCACAACAAGCATGATGGTTTTCGATAGGGAACGTGCCGCCTTTGGGGACGAAACGATATCCATTGCCTCTTATTGCTTTCAATTTTTTTTTCTCGTCTCAACATAGAACAACA
Scaffold19016	Ensembl_Plants	rRNA	6594	6668	.	-	.	ID=gene:ENSRNA049476667	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CCTATCATCTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCG	Scaffold19016	Ensembl_Plants	LTR/Gypsy	5161	9431	18422	-	.	ID=1372572	repeat_name=RLG_Fatima_3B_068_B08-3	repeat_type=LTRs	sequence=TATCGACCTTAGACGCACAGTTCAGGACCCCTACCCGAGATTCGCCGGTTTCGACACCGACATTGGTGCTTTCATTGAGAGAGATCCGCAGGGTCGTCGCCAGAAGGTTCGATGGCTCCATCCATTATCTACAACAATACTGCCCCGAGGGAGGTCTTCCTGCCCGGCCAGATCTTTGTGTTCGGCGGCTTCGCACTGTGGGCCAACTCACTTGGCCGTCTAGAGCAGATCGACAGCTACGCCCCATATCACCAGATTAGTTTTGGAATCCTCGATCATGTCGCTGATATCCAAGGAGACTTGATCTTCCAAGGGTTCGCGACCCCAACCCCTGCTCTGGCGTTCGATCCAGAGCACATCACCGGGTCCGAAGACGGGATTCTCGACCCCGCCGGACTCTCTGCGGCCATTAAGCCTAGCATGGGAGAGCCAGAGGAAGTAGTGTCAACGGCAATCATCATGAAGCCGGACTCTTCTTCGAACACTGGACCCGAACCCTCGGAGTCCGCATTACACGAGCCCGACCAAGGGATTTCTTCCCGCCGTACTCCACGGACTCTCTTTTCCCTGGCCGAACCTCGCCTTTAAGCGAGGCTCTGGACCTAATGCGATCACTCGTCATTACAAAGGAGCAACGTCCGAATTACGCCCATCCCGGACTAGAGGCTGATGGCGGGGAATTTTACGTCCCACCCACCACCCACTTCATAGCCACTGTCGGGGACCTTACCAACATGCTTGACCGTAACTCCGAAGACATCTACGGTATGGACATTGATGCCGGAGACGAACAAAGCTAAAATCCACCGCATACCACACGCTGGGCGGCCACCTCCACATTCGACGTATGCATAGTAGATACGGCAAGAGAGGATGGCGATGAGGGCAGTAAGGATCCAATCAAGGACAACAACACTGATAAACCACCAAAGAAGCGGCATCAGCGACGCCGTTCAAAATCATGCTGCGGCAAGGAAAGCAATACCGGCAATGGAGACAATAACACTCCGGAGAATGCCGAAGACACAGATGCCCCGTCGAACCAACACCCGAACATGATGATAGGTTGGAGGGGCTGGGTAACCCTGATGAGCTAGTCGGAAGCAAGGACTCGGAGGACAGCAATTATATACCACCCTCCGAAGACAACATAAGCCCCGGTGACGAGGATTTCATCGTGCCAGAGGATCCCCTCGAGCAAGAACGCTTTAGGCAACATCTCATCGCAACCGCGAGGAGCCTGAAAAAGGAAGCAGCAACGGCTTCAAGCCGAACGGGATACGCTCAACGACAAATGGACCAATGTCCTGGCAGTCGAGGAATACGGCCTTGCACGACCAACCAAAAGCTACCCGAGGCGTAAGCTGCTACTTCAATTCAATGACGAGGCACTGGAGCCCGTACCATCAACGCGTTACGCGGCTGACCGACCACCACGTGGCCGGGACAAAACGGCAACTCAAGCCGAACACCAGCCCATACTACCTCGTCGTAAAGATAGAGATACAGTAACTCGGGGATATACATATGACCTGCGGCAGGACCTGGAAAATAGAGCAGGTCAGACCATACCAATCTACGGATCACGGGGGCATGCACCGACGCACGATGACGGCTATCTAGCCGGACGTGACAAGCATAACCACTTCCGGGCCGAAAACCGCAGACGAACTCCATCCGAGCTACGTCGCGACTTGGCCCGATATAGAGGCGCCGCACAACCCCTCTGCTTCACTATTGATGTAATGGAGCACGAATTCCCAGGAGGGTTTAAACCCATGAATATTGAATCATATGATGGAATAACTGACCCTGCAGTATGGATTGAGGATTTTCTTCTCCATATCCACATGGCCCGCGGTGATGATCTCCATGCCATTAAATACCTTCCACTAAAATTAAAGGGACCAACCCAGCACTGGCTAAACAGCCTCCCAGAGAAGTCCATTGGCAGCTGGGAAGACTTGGAAGACGCCTTTCGCGACAATTTCCAAGGTACATATGTCCGGCCTCCGGACGCCGATGACCTCAGTCACATCATCCAGCAGCCCGGAGAGTCAGCCAGGAAACTCTGGACTAGGTTCCTAATTAAAAAGAACCAAATTGTCGCCTGTCCGGATGCCGTAGCACTCGCGGCCTTTAAACATAGCGTCCGCGACGAGTGGCTCGCCCGCCACCTCGGCCAAGAAAAGCTAAATTCCATGGCAGCTATGACCGCACTAATGACCCGCTTTTGCACGGGAGAATGGCTCGCTCGTAGAAGAAATAGCGCGAGCGATCCTGGCACCTCCGAAGTCAGGACGGCAATGGCAAGCCATGACGCAATGAAGACAAGCGTCGCAACAATAATGTAGGAACCCAAGACACAATTGTCAACGCCGGATTTAGTGGCTCCAAAACCTGTCAATGGAAGAAGCCATTGAAGGCAAACATAGATGGTCCATCCAGTCTAGACAAGATACTGGATCGGCCCTGTCAGATCCATGGCAGCCCCGACAAACCCACCAACCATACCAACGGAAATTGTTGGGTTTTCAAACAAGCCGGCAAGCTCAATGTCGAACACAAAGGGAAGGGGCCGCCTAGTGACAGTGAAGAAGAGGAGGCTCGCCTACCGAGCACCGGGGGACAGAAGCAATTTCCCCCCGAAGTAAAAAACAATAAACGTGATATACGTGACGCATACCTCTGAAAGGGAGCGCAAGCACGAACTATGAGACGACCACGCCCTTCGTGCCGGGAACGCATAATCAACATTTCTGCCCTATCATCTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGATCTCACGCGAGTCCTCATGGACGGCGGCAGTAGCCTCAATTTACTCTATCAAGACACTGTCCGCCAAATGGGCATTGGCCCTTCAAGGATCAAGCCCACCACAACTTCCTTCAAGGGAGTAATACCCGGCGTAGAAGCTCACGGCACAGGCTCAATCTCACTGGAAGTCGTCTTCGGTTCACCGGAAAACTTCCAACGCGAAGACTTGATCTTCGATATTGTCCCATTCCGCATTGGCTACCACGCACTGCTCGGGTGGACCGCTTTTGCTCGTTTCAATGTGGTCCCAAACTACGCCTATCTAAAGCTTAAGATGCCCGGTCCACGCGGCACCATAACGGTCATCGGAAACACGGAACGCTCCCTCCGCACTGAGAGGCACACTGTGGCAATCACAGCCGAAGTACAAAGCGGCCTCCTCAAGCCACATATCTCATCGGTCATTAAACCGCCGGCCTCTACTACACATGACCGGTCAATTTTAGAGCTGGATTAGCTGCTCCGCCTCCGTCGTTCGCCTCTTATACCCATGGAGTTTGCACCGCGCATACATAATTATGCACTCAAAAGACCTTGGTCATCGGCGGAGGCACAATACGAACAGGCCTACAAAGTGGTTCGTCCGGACTTTAGCCTTTTCTCTTTTTTCTAACTATTTTCTTATCTTTTTTCCATAGGTGAATCAATACCTGTCCATCCTATGGACCTGAAAGTACTCTTAATGAGCCTGGCTTTCCTACAAATAACCGGGGATTGCTCCCTTTAAGGAAGCCTTTTCGCGGAAGCATAGGCAGCGCAGACGTGCGACATAGGTCCAAAAGATTTTTTGTAGACCAAAAATCCTATTTGAAACCTGTACAAAGCCTTTTTCCTCAGCCCTCGACCCCTGGCACGTAAAATGGCCTGGGTGGTGGTGTCATAATCTGTTAGATTACGTTCAACGTATCGATCAGATTTTAGTGAACATAATCCATCTTCAGTATTTGCTTTTCCACATACAAACGTACCTTGCTTCTTCGGTTGTTTCACGCAGACACCTCGGCACAAATCGCCAGGGGCATGATACGGCAACATATGGGTTGCCAAAAAAGTCTGAACTGCTCCATAGCATACTTCGGCGTCACGAGTTTGGCATTATATGCATCAGCTCCGAATCATGTCTTTGGTCAATAGTTGGGTTGCCCGGCTCCAGTGCTTGCTACCCTACGTTCCGTCTTATCGGCTAGGGTAGTGAAGGGAGAACTACTGCGATTGTGTTTGCTGTTCACCTGGTCAAACACCTCAGTAAAGAAAGCCGAAAACTGACTGTCATGATGCGGCGAGAGCTGGTCAACCACTCGGTGACTTATCAGAATCTTTTGCGATTTCTTTCGTATTACACGAAGGACCGTTTTTCTGGTCACCTATGTAACGCAACCGTATTCAGAT
Scaffold45924	Ensembl_Plants	rRNA	12474	14084	.	+	.	ID=gene:ENSRNA049476660	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TACCTGGTTGATCCTGCCAGCAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAATGTGGCACCCCGGCTCAGAGAAACCGGAACGCCCCGTATTCCAGCCCAGAGATCGAGGAGAAGTCTTCTGGAATACGGCATTGCTTAGCATAGAACAAATCAGCTCTTTATTAAAATCTATATGGGTACAATTGGATTACTTCGGCACGGCGACAATACACCTGCCACAGTTGCTCCAAGCAAGCAGCAGAACAACACGATGTAGCGGAATGACTACTGGTAGCGGAAAAGCGACGACGGCGGTGAACTCCAGTCCGCAGGGACTCTGGCTGGAACGCTTATCCAAGAGCGCAAACAAGGGGTCCACGGCAAACAAGCAATCATATCTGGCATGACCTACAAACTGGCATGACACGCCAGGTCAGTACATTGAATGTACTTGCAAGCTCACAGCAACCAAAGCAATCAAGACAAGCAATAGCATGGCAATTATAGATTATTAAGCAATGATTAACATGATTCTATCAGATCAACCATAGCATGGGCAAGATGATACATCTAGAACAATACGAGCATGGCATAAACATATGAACATGATGAGACTAGCATGCCACATGATGAACTATCATGCACCAACTTACTCTGTTCGGGTTACATCGTAACCACCACATGTATCACTTACCATCACGGACATCACACGATCATCTCAGGATCCAATCAAGCTTGGTATTAACAATACCGTAGTAATCATACATGACCACAAGGAGCTTGATCTTTACCCTTGACTCTCGCATAACACCCCAAATATCCAACGAGTCGGTATCCACGATACCACAGTGATCCTCTCACGATCACATAAGTATCAACCAACTTCTTTCATCATCAAACCGGGGTTGTTATTAATCAAATTATTATTACTATTACTGTTGACCCATAGTGTGACCGACATGAACTGGGCACATATCCGCGGGCGCGGCTATCGATAGATTAAACGCACACTCTGCAGAGGTTAGCACACTGTACCCACACCACGGAACCCATGGTCTCGCACTCCCATACGTGCGGACACGACGTTCTGACAAAACCGACCTACTGCCATGACACTCTCCCGGCCACTCCGACAAGCTCCCCTTTGGGCTAAGTCCTGGGTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGGTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTATTACCGATCGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCTCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGGCGTAACAAGGTTTCCGTAGGTGAACCTGCGAAAGGATCATTG	Scaffold45924	Ensembl_Plants	LTR	12536	12666	235	+	.	ID=1790807	repeat_name=LTR_HVVMRX83khA0140C02_v78_c1_967	repeat_type=LTRs	sequence=GTGGCACCCCGGCTCAGAGAAACCGGAACGCCCCGTATTCCAGCCCAGAGATCGAGGAGAAGTCTTCTGGAATACGGCATTGCTTAGCATAGAACAAATCAGCTCTTTATTAAAATCTATATGGGTACAA
Scaffold45924	Ensembl_Plants	rRNA	12474	14084	.	+	.	ID=gene:ENSRNA049476660	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TACCTGGTTGATCCTGCCAGCAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAATGTGGCACCCCGGCTCAGAGAAACCGGAACGCCCCGTATTCCAGCCCAGAGATCGAGGAGAAGTCTTCTGGAATACGGCATTGCTTAGCATAGAACAAATCAGCTCTTTATTAAAATCTATATGGGTACAATTGGATTACTTCGGCACGGCGACAATACACCTGCCACAGTTGCTCCAAGCAAGCAGCAGAACAACACGATGTAGCGGAATGACTACTGGTAGCGGAAAAGCGACGACGGCGGTGAACTCCAGTCCGCAGGGACTCTGGCTGGAACGCTTATCCAAGAGCGCAAACAAGGGGTCCACGGCAAACAAGCAATCATATCTGGCATGACCTACAAACTGGCATGACACGCCAGGTCAGTACATTGAATGTACTTGCAAGCTCACAGCAACCAAAGCAATCAAGACAAGCAATAGCATGGCAATTATAGATTATTAAGCAATGATTAACATGATTCTATCAGATCAACCATAGCATGGGCAAGATGATACATCTAGAACAATACGAGCATGGCATAAACATATGAACATGATGAGACTAGCATGCCACATGATGAACTATCATGCACCAACTTACTCTGTTCGGGTTACATCGTAACCACCACATGTATCACTTACCATCACGGACATCACACGATCATCTCAGGATCCAATCAAGCTTGGTATTAACAATACCGTAGTAATCATACATGACCACAAGGAGCTTGATCTTTACCCTTGACTCTCGCATAACACCCCAAATATCCAACGAGTCGGTATCCACGATACCACAGTGATCCTCTCACGATCACATAAGTATCAACCAACTTCTTTCATCATCAAACCGGGGTTGTTATTAATCAAATTATTATTACTATTACTGTTGACCCATAGTGTGACCGACATGAACTGGGCACATATCCGCGGGCGCGGCTATCGATAGATTAAACGCACACTCTGCAGAGGTTAGCACACTGTACCCACACCACGGAACCCATGGTCTCGCACTCCCATACGTGCGGACACGACGTTCTGACAAAACCGACCTACTGCCATGACACTCTCCCGGCCACTCCGACAAGCTCCCCTTTGGGCTAAGTCCTGGGTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGGTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTATTACCGATCGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCTCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGGCGTAACAAGGTTTCCGTAGGTGAACCTGCGAAAGGATCATTG	Scaffold45924	Ensembl_Plants	LTR	12871	12958	367	+	.	ID=1790808	repeat_name=LTR_HVVMRX83khA0140C02_v78_c1_967	repeat_type=LTRs	sequence=CTACAAACTGGCATGACACGCCAGGTCAGTACATTGAATGTACTTGCAAGCTCACAGCAACCAAAGCAATCAAGACAAGCAATAGCA
Scaffold45924	Ensembl_Plants	rRNA	12474	14084	.	+	.	ID=gene:ENSRNA049476660	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TACCTGGTTGATCCTGCCAGCAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAATGTGGCACCCCGGCTCAGAGAAACCGGAACGCCCCGTATTCCAGCCCAGAGATCGAGGAGAAGTCTTCTGGAATACGGCATTGCTTAGCATAGAACAAATCAGCTCTTTATTAAAATCTATATGGGTACAATTGGATTACTTCGGCACGGCGACAATACACCTGCCACAGTTGCTCCAAGCAAGCAGCAGAACAACACGATGTAGCGGAATGACTACTGGTAGCGGAAAAGCGACGACGGCGGTGAACTCCAGTCCGCAGGGACTCTGGCTGGAACGCTTATCCAAGAGCGCAAACAAGGGGTCCACGGCAAACAAGCAATCATATCTGGCATGACCTACAAACTGGCATGACACGCCAGGTCAGTACATTGAATGTACTTGCAAGCTCACAGCAACCAAAGCAATCAAGACAAGCAATAGCATGGCAATTATAGATTATTAAGCAATGATTAACATGATTCTATCAGATCAACCATAGCATGGGCAAGATGATACATCTAGAACAATACGAGCATGGCATAAACATATGAACATGATGAGACTAGCATGCCACATGATGAACTATCATGCACCAACTTACTCTGTTCGGGTTACATCGTAACCACCACATGTATCACTTACCATCACGGACATCACACGATCATCTCAGGATCCAATCAAGCTTGGTATTAACAATACCGTAGTAATCATACATGACCACAAGGAGCTTGATCTTTACCCTTGACTCTCGCATAACACCCCAAATATCCAACGAGTCGGTATCCACGATACCACAGTGATCCTCTCACGATCACATAAGTATCAACCAACTTCTTTCATCATCAAACCGGGGTTGTTATTAATCAAATTATTATTACTATTACTGTTGACCCATAGTGTGACCGACATGAACTGGGCACATATCCGCGGGCGCGGCTATCGATAGATTAAACGCACACTCTGCAGAGGTTAGCACACTGTACCCACACCACGGAACCCATGGTCTCGCACTCCCATACGTGCGGACACGACGTTCTGACAAAACCGACCTACTGCCATGACACTCTCCCGGCCACTCCGACAAGCTCCCCTTTGGGCTAAGTCCTGGGTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGGTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTATTACCGATCGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCTCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGGCGTAACAAGGTTTCCGTAGGTGAACCTGCGAAAGGATCATTG	Scaffold45924	Ensembl_Plants	LTR	13440	13634	263	+	.	ID=1790809	repeat_name=LTR_HVVMRX83khA0140C02_v78_c1_967	repeat_type=LTRs	sequence=CGCGGGCGCGGCTATCGATAGATTAAACGCACACTCTGCAGAGGTTAGCACACTGTACCCACACCACGGAACCCATGGTCTCGCACTCCCATACGTGCGGACACGACGTTCTGACAAAACCGACCTACTGCCATGACACTCTCCCGGCCACTCCGACAAGCTCCCCTTTGGGCTAAGTCCTGGGTAGCTATGCG
Scaffold45924	Ensembl_Plants	rRNA	8043	9269	.	+	.	ID=gene:ENSRNA049476657	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=AACAATGTAGGCAAGGGATGTCAGCAAAACGGATCCATAACTTCAGAAAAAGGATTGGCTCTGAGGACTGGGCTCGGGGGTCCTGGCCCTGAACCTGTCGGCTGTCGGCGGATTCCTCGAGCTGCTCACGCGGCGAGAGCGGGTCGCCGCGTGCCGGCTGGGGGACGGACCGAGAATCGCACCTTCGGGGGCTTTCCCCGAGCATGAAATAGTCGACTCAAAACTGGTACGAACAAGGGAAATCCGACTATTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATAAGATTTCTGCCCGGTGCTCTAAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGTGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTTAGCTTGACTCTAGTCCGACTTAATGAAATGACTTGAGAGGTGTAGGACAAGTGGGAGCCCTCATGGGCACAGGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCTGTGGGTCGCAAGCGGGGCATGTCCCCTCCTTTTCGCTCCAAGGCCCGGTCTTACCGGCCGATCCACAGAATAACGCAAGTGTCCTAAGATGCGCTCAACGAGAATAGAAATCTCATGTGGAACAAAAGGGTAAAATCTCGTTTGATTCTGATTTCCAGTACGAATACAAACGTGAAAGCGTGGCCTATCGATCCTTTAGATCTTCGAAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCGTAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTATTCCTATCATTGTGAAGTAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCATCGTGAGACAGGTTAGTTCTACCCTACTGATAGCAGTGTTGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGACTTAAATACGCGACGGGGGATTGCAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCATGTCG	Scaffold45924	Ensembl_Plants	LTR/Copia	7808	8043	1750	-	.	ID=108561	repeat_name=Angela1_AT_LTR	repeat_type=LTRs	sequence=TGTTGGAAATATGCCCTACAGGCAATAATAAATGGTTATTATTATATTTCTTTGTTCATGGTAATTGTCTATTGTTCATGCTATAATTGTGTTATGCGGAAATCGTAATGCATGTGTGAATACATAGACCACAACGTGTCCCTAGTAACCCTCTAGTTGACTAGCTCGTTGATCAACAGATAGTCATGGTTTTCTGACTATGGACATTGGATGTCATTGATAACGGCATCATATC
Scaffold26404	Ensembl_Plants	rRNA	2411	2534	.	+	.	ID=gene:ENSRNA049475874	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=GACGAAACCCGCCGCCCGAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGACACTCGGCCGAGGGCACGCCTGCCTGGGCGTCA	Scaffold26404	Ensembl_Plants	LTR/Gypsy	1791	2538	3798	+	.	ID=893954	repeat_name=trep2261	repeat_type=LTRs	sequence=GTAACACCCCGGATGTAACTTTCCATATTTGTAACTCCAACTCTTGCCATTTTCGGCTATGTATGATGATATTCCCTTCGTGGTCGGGTTTTGTCTTTCGTTTTGCATTTTGTTCATGTCATGCATTTCATATCATATCATCATGTGCATCTCATTTGCATACGTGTTCGTCTCATGCATCCAAGCATTTTCCCCGTTGTCCGTTTTGCAATCCGACACTCCCACATGCACTGGCGCATCCCTCTTATCTCTTTTCGTGAGCGGGTGTTAAACGTTCTCGGAACGGACCGAGTCTTGCCAAGTGGCCTTGCTACACCACCGGTAGACCACCTATCAAGTTTCGTTCCATTTGGAGGTCGTTTGATGCTCCAACGGTTAACCGGGTAACCGCAAAGTCCTTTTGTGTGTTGCAGCAAAACCCCCCTCCAAACAGCCCAATAACCCACCTAAGGCCCTTCCATGCTCTCGGTCGTTCGATCATGATCGTGTGGGCGAAAAGCTCACTCTATTTGGAGTCTCCTAGCTCCCTCTACCTATAAATATGTCCTCCCCGTTCAAAATCCGGGTAAAAACCCTAGCCCCGCTCCCTCCGCGCGCCGGACACGTCCGCCTGGCACCGGACGAAACCCGCCGCCCGAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGACACTCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCC
Scaffold95140	Ensembl_Plants	rRNA	17519	17813	.	+	.	ID=gene:ENSRNA049474937	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGACGGGAGGGCGTGGGAACACGACGAGCTA	Scaffold95140	Ensembl_Plants	LTR	17785	18364	1801	-	.	ID=1870658	repeat_name=RLX_Ginger_3B_102_N04-1	repeat_type=LTRs	sequence=CCCCCCCATAGTTACCAGGATGAAAGTCCTTCTTTACCTCAACCTCGCAGACAACTCCATTGGATCCAAAACCCTTGCTGTTCACTAGTGCTCACCCAAGTTTACTGCAGTAAACTTCAGAGGGTTCTTACCGTTTAACCAGATCACTTTTAACCGAGCTACCACCGGAGTTGAAACCTACACTAGATGAACTTACCACTAGACAACATGTTCAAGCCTCTCTCCCCCGCTACATGCCAGTGCACGCGGTGACCGCGTTAATGGCATCACTGTGCACGCGCTCTGTGTGCAGTGGCCGCGCCCAGTGGCTGTTTGTTCTTCGGCCCCTCCTCCTCTCATCGTCTTCGCGCGTGTGAGCGTGTCCAACAGCTAGCCTGCATCGTCGCCGTCCCCCTGGACCCCTCTCCCCCTCCGGCAGCTTCCTCACCGACGCCCACCGACGCTCGCCGCCGAACGCCCATGGGAGCACAGTGCCCTGACATGTTTTAATGGTGCTCGGCCTCTTCCTGTGCTCTCCAGTGTCGCCCACCCCTCTGTGAGCTCTGAATCAATAGCTCGTCGTGTTCCCACGCCCTCCCG
Scaffold40406	Ensembl_Plants	rRNA	10871	11026	.	+	.	ID=gene:ENSRNA049474390	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=GACTCTTGGCAACGAATATCTCGGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATAGCTGGTGTGAATTGTAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGGCCGAGGGAACGCCTGCCTGGGCGTCA	Scaffold40406	Ensembl_Plants	LTR/Gypsy	10869	11027	1143	+	.	ID=2210349	repeat_name=LTR_Al_scaffold_0003_560	repeat_type=LTRs	sequence=CGACTCTTGGCAACGAATATCTCGGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATAGCTGGTGTGAATTGTAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGGCCGAGGGAACGCCTGCCTGGGCGTCAC
Scaffold40406	Ensembl_Plants	rRNA	9121	10644	.	+	.	ID=gene:ENSRNA049474376	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACCAATTTGAACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTACGTGTTACTCGGATAACCATAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGCGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTGCTCGCTAATCCGATGATTCATGATAACTCGACGGATCGCACGACCTTCGTGCCGGCGATGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCGTGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATACTGACAAGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCATTAGTGTCTGGTAATTGGAATGAGTACAATCTCAATCCCTTAACGAGGATCCATTGGAGGGCAAGTTTAGTGCCCGCAGCCGTAGTAATTCCAGCTCCAATAGTGTATATTTAAGTTGTTGAAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACCGCGAGCACCGACCTACTCGACCCTTCGGCCGGCATCGCGCTCCTAGCTTTAATTGGCCGGGTCGTGTTTCCGGAATCGTTACTTTGAAGAAATTAGAGTTCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCAAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGTTCGAAGACGATCAGATACCATCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACTCTGCCGACACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCACAAGGCTAAAACTTAAAGGAATTGACGGAAGGGCCTTAGATGTTCTGGGTGGCACGCGCGCTACACTAATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAATGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCTCTGCCCTTTGTACACACTGCCCGTCGCTCCTACCGATTTACTGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGTGGTTCGCCGCCCCCGACATCGTGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG	Scaffold40406	Ensembl_Plants	LTR	9118	10280	9214	+	.	ID=2210352	repeat_name=LTR_Al_scaffold_0183_279	repeat_type=LTRs	sequence=GCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACCAATTTGAACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTACGTGTTACTCGGATAACCATAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGCGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTGCTCGCTAATCCGATGATTCATGATAACTCGACGGATCGCACGACCTTCGTGCCGGCGATGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCGTGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATACTGACAAGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCATTAGTGTCTGGTAATTGGAATGAGTACAATCTCAATCCCTTAACGAGGATCCATTGGAGGGCAAGTTTAGTGCCCGCAGCCGTAGTAATTCCAGCTCCAATAGTGTATATTTAAGTTGTTGAAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACCGCGAGCACCGACCTACTCGACCCTTCGGCCGGCATCGCGCTCCTAGCTTTAATTGGCCGGGTCGTGTTTCCGGAATCGTTACTTTGAAGAAATTAGAGTTCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCAAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGTTCGAAGACGATCAGATACCATCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACTCTGCCGACACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCACAAGGCTAAAACTTAAAGGAATTGACGGAAGGGC
Scaffold42632	Ensembl_Plants	rRNA	5403	5558	.	+	.	ID=gene:ENSRNA049473268	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=GACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGGCAGAGGGCACGCCTGCCTGGGCGTCA	Scaffold42632	Ensembl_Plants	MobileElement	5405	6198	3652	+	.	ID=2246148	repeat_name=TXX_Gr_DX403825.1_7641	repeat_type=Unknown	sequence=TCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACATGCTCCCAACCACCCTCATCGGGAATCGGGATGCGGCATTTGGTCCCCCGTCTCAAAAGGGGCGGTGGACCGAAGATCGGGCTGCCGGTGTACCGCGTCGGACACAGCGCATGGTGGGCGTCCTCGCTTTATGAACGCAGTGCATCCGACGCGCAGCCGACATTATGGCCTCAGAACGACCCAGCAAACGAAGCGCACGTTGCTTCGACCGCGACCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGCAGCCCAGCTTGAGAATCGGGCGGCTGTGCCGTCCGAATTGTCGAATTGTAGTCTGGAGAGACGTCCTCAACGATGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCTAGGAGGGTGAAAGCCCCGTCCGGCCGGGACCCTGTCGCCCCATGAGGCGCCGTCAACGAGTCGGCTTGTTTGGGAATGCAGCCCAAATCAGGCGGTAGACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACATGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCG
Scaffold19648	Ensembl_Plants	rRNA	178983	179074	.	-	.	ID=gene:ENSRNA049472518	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold19648	Ensembl_Plants	LTR	179043	179120	547	+	.	ID=2000062	repeat_name=LTR_HVVMRX83KhA0124C05_v56_c1_404	repeat_type=LTRs	sequence=GGGTTTCATACCCATGGGACTGGCTAGTTTTTACGTTGGCTCGCCAAGCCTATCACAACCCTCCTCCTTTACCCGGG
Scaffold24104	Ensembl_Plants	rRNA	40019	40110	.	-	.	ID=gene:ENSRNA049472344	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGACGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold24104	Ensembl_Plants	LTR/Copia	39969	40260	2505	-	.	ID=2084439	repeat_name=trep3125	repeat_type=LTRs	sequence=AGGCTTGGCGAGCCAACATAAAAACTAGCCAGTCCCATAGGTATGAAACCCATTTGAGCGAGAGCAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGAAAGGGTTTCATATTTAAGGGTTGTGATATGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGACGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCAAAATTGTTTGGGATAAAAGGCTTCGTAAGTACG
Scaffold11600	Ensembl_Plants	rRNA	49741	50124	.	-	.	ID=gene:ENSRNA049471052	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACGGCGAGCACCGACCTACTCGACCCTTCGGCCGGCATCGCGCTCCTAGCCTTAATTGGCCGGGTCGTGTTTCCGGCATCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCATGACACCCGCCACCACCACCACTTGTTAGTAGTCTG	Scaffold11600	Ensembl_Plants	LTR/Gypsy	50118	52082	12654	-	.	ID=1132886	repeat_name=RLG_Cereba_3B_100_L17-6	repeat_type=LTRs	sequence=TGATGAGGACATCAATACCATTGTTACACCCACAGCCCCTACTATTACATATACTGGACCAATTACTAGAGCTCGGCACGCCAATTAAATTCCCAAGTACTTTCGTTTCTTGGTAATGATTCTAATGTTCATGAGAATATGATGCTGCCTAAATTGGATACATTTGTTTTGCTTACAAATGAAGGGCCTAGCTTGGAGAAGGATGAACATTGGAGCAAGAACAAGCATGGAGTTGATGGCATGCGCAAGGGGATCAATACCGGATTTACAAGTGACGATTTCAGGACTTTGAAGCCACCATAAGGAGTGCATGAAGCCTTGGACGAAATATACAAGATGCCACTTCATAAATTTCATCCAGAGGCTATTCTAGGTGCCGCATCACCTTATTATTGGGCCAGGCCCATGTATTTTCGAAATACTTAAGTATAGGCTGTTTTTAGAGTCCGTATGTGTGGGGAAACAAGAGTTAGGGTTGGTTTCGGACCCCTCCTCCAAGGGCCACGAAATTCCCCCCTCTTCCTCCATATATCCAGCCCTTAGGGCGTCGTTTAGACTTTGGATTTTGTTTAGACTAAAAGTTCGCCATAGCTGCAACTTCGCGTACTTCGTTTGTGTTCAACGACCAGACAAAGGCGTCACAGAACCCCACCTTCATTAATAAAGCTTTCCTCTTATATTCGCAATATCCAGATTGCAATCTCAGTTTCTTGCTTGTTCTTCATTTGCTCGCAGGAAACAGACCCTCGTGGTCAGGTTGATCGTGCTCCAGCGTGGTCAATAACCCCTCGGAAGTTTGTTTAGCGATTGCTAAGGCGCGACGTCTTCGCACATTCGTAGTCGGATCGTCAAGGTCGACTCCCACAGAAAACGATAGTCATCATCTCATCGAAACATTGGGACACCTTCGCCTCTATCAAGTGGTATCAGATTCCTAGGTTGCTCGGTGAGATTTTACAGTTTTTCGTAGTTTAGATCGAGTCTGTTCTTCATACCTATAGTCCACGAAAAAGCCACAAAAAAATTAGGGTTAGTTCATCATATCCGAACCAGTCTGAGCCTTTGCATAGTCTTTTCAGTATTTTGCTTTGTTGAATTTGCGGTTGCATCGTCGTGTCAAGTTGCTGGTCTTAGCGTCTAGTTTCCCTTAGAGTTTCGAGTTCTGTTCACAAGTTGTCATGCCGCCGCCGCACCATCGTCATCGCTCCTGCCATCTACCACCACCGCTTATCCGCCACCAATCCATATCCATATACCACCACCAATCCGTATCAATATACCACCACCAATCCGTATCCATATACCACCACCAATCTGTATCCATATACTACCACCACCGCTGCCATATACCACCATCGGTGTCATATACCACTACCGCTGTCATATCTTACCATCATATATCCACCACCAATCCGAGTTCTTCTCATATTAGGTTTGTTTTCGAGATCCATCTAATTTCCGATTCGTGTTTCCTTGCCTGAGTAGGTTTCGGAAGAAAAATTCTGACGGCCGAAAATATTTTTTCCCTATCCTATTTTTATGCTTTTCTGAGTCTTATGAGACACTCGTCATCATAGTGTTTTTTTTTCGCACTTTCTCGTCGTCGCTGCCCTGATTTTCAAAAAAAAGTCCAAAAAATTCATGCCCATCCTGTCAGTTTGACATGGGAAGAGTTTTGAGACACTCGCCATTATAGTGATTTTTCGCAAAAAAAAGAGGAGCGCAAAAAAACAGCGGCAAAAAAACAGAGCGATTTTTTTAGAGTGTGCTTTTCCTTTGTTTATGTGCAGCGCCGTGATTTTGTTAGTGTTCTAAGCTCGCGTCTCTAGCACGGTCTAGCCTAGGACCAGCACAGTACCGTCGTTGAGCGTTTATTCAGCTTTGCATATCTGAATTGATTATTGCCGACCCTTTTTGCTACCATATTATAAGCCTTCCAGCTCCAATAGCGTATATTTAAGTTG
Scaffold11600	Ensembl_Plants	rRNA	49741	50124	.	-	.	ID=gene:ENSRNA049471052	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACGGCGAGCACCGACCTACTCGACCCTTCGGCCGGCATCGCGCTCCTAGCCTTAATTGGCCGGGTCGTGTTTCCGGCATCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCATGACACCCGCCACCACCACCACTTGTTAGTAGTCTG	Scaffold11600	Ensembl_Plants	LTR/Gypsy	49692	49784	293	+	.	ID=1937636	repeat_name=HRSiTERTOOT00001	repeat_type=LTRs	sequence=ATCCTGGCATGGTTAGCAGCAATAGAAACACACAAGAATATGATCCTACAGACTACTAACAAGTGGTGGTGGTGGCGGGTGTCATGGCAAAT
Scaffold11600	Ensembl_Plants	rRNA	49741	50124	.	-	.	ID=gene:ENSRNA049471052	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACGGCGAGCACCGACCTACTCGACCCTTCGGCCGGCATCGCGCTCCTAGCCTTAATTGGCCGGGTCGTGTTTCCGGCATCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCATGACACCCGCCACCACCACCACTTGTTAGTAGTCTG	Scaffold11600	Ensembl_Plants	LTR/Gypsy	48690	49767	7501	-	.	ID=1187611	repeat_name=LTR_AC200767.1_4	repeat_type=LTRs	sequence=CCACCACCACCACTTGTTAGTAGTCTGTAGGATCATATTCTTGTGTGTTTCTATTGCTGCTAACCATGCCAGGATCACAAGCCGATGAGACTGACTGGGAGAACTTGACGAGCAAGGAGCTTCATGATAAGTTTCAGCAAATGATGAGTGGACAGGTGCAAGATGTGCTAAACAGATTTGAAGAGGCCATGGAGAAGATAGATGGCATGGAGAAGACGTTTGAAACAAAGCTCGATAACAAGTTTGCTGAATTGGTTTCGCGTTTTCCACCACCACCGCCGGCTGCACCTATCACACCTCTACAACGACAACAACAACGCCCCCTCCCGAATCAGTTCGGACGAGCGAAGCATGTTCCTCTTGAGGATGGTCAAACTTCTGGAGCTGCTGTACCTGGTGTTGATGCTTCTGTAGCTCCTGCTGCTACTGCAGAGGTGGAGGACCATTATGAGGATGAGGTTGATCAATATCAGAACTACGTGCAACCACCACCAGCACCACCACCAGGTCGTCCTCATGCATATCACCGCAACGGTAGGGATGCACCACCACATGAGGTACGAGATCATGACCATCTTCCTAAACTGAAATTGAATATTCCACCATTTGAGGGTAGATATGTTCCTGATATATATCTTACTTGGGAGTTAGAAACTAAACAACGTTTTACATGTTTACAATATCCCGAGGAGAGACGTAGACGTGTTCCTGCTGCTGTTTGTGCTTTCACTAGCTTTGCATGTGTTTGGTGGTCTGAACATTGTAGATTATATCCTATTCCAGCTACTTGGGCTGCTTTGAAAACTGCTATGCGTACTCGTTGGGTTCCACCATATTATCAACGTGAATTACTTCAAAAATTGCAACGCTTAAGACAAGGAAAAAATCCTGTAGAAGAATATTATCAGGAATTACAAACTGGCATGATTAGATGTGGTATTGTTGAGGAGAATGAAGCTATGCTTGCACGTTTTATGGGTGGATTAAATAAAGAGATTCAGACCATTCTAGAGTATAAGGATTATAATAATATCACTCGTTTATTCCATCTTGCTTGTAAAGCTGAACGTGAAGTGC
Scaffold4613	Ensembl_Plants	rRNA	142576	142665	.	+	.	ID=gene:ENSRNA049470738	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=ACGGTTCAGTCAGACTAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCTAGTACGAATACGAACCATGAAAGTGT	Scaffold4613	Ensembl_Plants	DNA/En-Spm	141162	142602	9608	-	.	ID=838490	repeat_name=DTC_unnamedfam48_3B_053_M11-1	repeat_type=Type II Transposons	sequence=CACACGAGATTAGTCTGACTGAACCGTGTCTGTTGCATACCCAATCGCAGATGGTTTCTACATCCAACTCGTGTTCTGCTTATAAATTTGGCAAAAATAATAACGCGGGAGAGGGTCAGAACACGAACACACTTGCATGTGGACCAAATATATGTATGAAAAGGGTGGTTTGATGTTCGAATACCCAATGCACAACTTTGGTGGCACCTGTCGCACAAAAGCACAATATTGCTAGTCATCCACCCCCTATGAACCCCACTTCGTGTCGGCGGTAAGGGAATCCTAGCTATGAATGCATGCCCCCAAATAGCTAGGTCTAAAATCTCACCCTACCGTACCACAAAACCTATAGGAGTCCATCATATATGGTCAAACTTCCCCTTTCGCTTCCCGACAAAGGTGGACCGTGTGCCGACCAACAAATGTGTGCTTGTGGCGCGAGATGGGTGAGACCACATACGAACCACATGCGGGTGGCCCTACTATATGTATGAAAAGGGTGTGGTGTGATATTTAACTACCATTCACAACTTTGATGTGGCACGTGTGCCTCGCAAATTAACCTTCCTCGACCCCCACGGAGGTTGCAGGTAGTGCGAAGTACCCCCCCCCACACACACGTCGGGGGGGGGGGGCATCTCACCAAGACGTACTATAACACGGACCAAGCAGAATCCAACTTGGTCGTACAACCTCTCCCGCTCGTTGTTGGTCAAAGTGATGGACGTCCACATGGCCCCGCAAAATGGACTAGCTTGTCACCGATAACCTCACGAGGGAGTACTGTATGAAGACAAACCCACCCTGTGCATGTGGCCCAAGTATGTATATGGAAGTGGTGTGCGTGGTGTTTGAATACCCAATGCGAAATTTGATGTGGCACCATGCTTTGGAATCGTAAAATCCCCACACTGAGCGAGGGTTCATGACGCGTAGCATGCGCTCAAACTTAATTAGGCTTGGAATGGTCGACCTAGTATACGGTAACTCGAAGCAAAGAAGAACAATCTACCCTATGAACCTTTTTTATCGTTGGTCGAAATGACGGACGCCCACGCGAGCCCACGAATATATATAGGCTTGTCGCCCGTAACTAAGCGAGTGAGAGTGTGTCCAAAGACAAACATTGCATGCGTGTGTCCAGGACATATTTATGGAGGTGTGTGATGCATGCATATGTGTTGAATATCCCTGACAACATTGATGTGGTGCATGCGGTAGAAATCGCAGAGGTCCCCACACAGAGCAAGAGGTCGTTCATAATGTGTCGTGTGCTCGCCCCCCTTCGATCTAGCGGGATGGATTCATGTGTACACATGCACTATTATATATATGTAATCTCACATCATGATCTATATCATGAGACAAACAAAAAATTAATCCCCTCCTAAGTCAAATTAGTTAACCTCTCTCGCGCTGTCGGTGAAGTGATGGACCAAG
Scaffold55775	Ensembl_Plants	rRNA	106484	106574	.	+	.	ID=gene:ENSRNA049469935	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGACGAGAGTAGTATTAGGATGGATGACCTCCTGGAAAGTCCTCGTGAAAGTATTT	Scaffold55775	Ensembl_Plants	LTR/Copia	106219	106614	2921	+	.	ID=2084442	repeat_name=trep3125	repeat_type=LTRs	sequence=TCCAATTTTCATCAATTGTTTTATTTAAATAGACTTTGATGTTACCAACTCCGCCTATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGTGATAGCTAGGCTTGGCGAGCCAACGTAAAAACTAGCCAATCACATGGGTATGAAACCCATTTGAGCGAGAGTAGCACTAGGATGGGTGACCTCGTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGACGAGAGTAGTATTAGGATGGATGACCTCCTGGAAAGTCCTCGTGAAAGTATTTTATACCTAGCCTACCCCAACTTGTTTGGGACAAAAGGCTT
Scaffold1206	Ensembl_Plants	rRNA	158316	158781	.	+	.	ID=gene:ENSRNA049469606	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGCCCTCAGCCTGCTAACTAGCTATGCGGAGCCATGCCCGGTGCCGGCGCCCATCTGCACTGCTCGACCCTCTCCTGGGTCGGGCGCTCGCATCGCCCAGTGCTCGCATCCCCCGTGCCCGTAACCGCTATGGCTTTTGGCCCGTTGACAGCCGGGGTCCAGCCCGCAGAACATATAAAAAAAGGAATAAAAAATGTGTTAAAATAAATAAATCAGTAATTAATTAATTAATGAATTAATTAAGTTAATTAATCCTATTTAATTAATCTAATTAACCAGTTGGTTTAATTAAACAGTAATTAGATTAGCTAAATCCTAATTAACCTAAACAGAGTATGACAGGTGGGTCCCGCACGT	Scaffold1206	Ensembl_Plants	LTR/Gypsy	158445	159354	3865	+	.	ID=1064961	repeat_name=RLG_Latidu_3B_068_J02-2	repeat_type=LTRs	sequence=CTATGCGGAGCCATGCCCGGTGCCGGCGCCCATCTGCACTGCTCGACCCTCTCCTGGGTCGGGCGCTCGCATCGCCCAGTGCTCGCATCCCCCGTGCCCGTAACCGCTATGGCTTTTGGCCCGTTGACAGCCGGGGTCCAGCCCGCAGAACATATAAAAAAAGGAATAAAAAATGTGTTAAAATAAATAAATCAGTAATTAATTAATTAATGAATTAATTAAGTTAATTAATCCTATTTAATTAATCTAATTAACCAGTTGGTTTAATTAAACAGTAATTAGATTAGCTAAATCCTAATTAACCTAAACAGAGTATGACAGGTGGGTCCCGCACGTCAGGTTGACCAGTCAACACCTCTGTTGACTGCTGACGTCATGCTGATGCAATAATACTAGTTTCAAATTAATTTAATAATAATAATTTAGAAAATGATTTAAAAACTTTAAAAATTAATATAACATAAACCGTAGCTCAGATGGAAAAACTTTGTACATGAAAGTTGCTCAAAACGATGAGACGAATCCGAATACGCAGCCCGTTCATCCGCCACGCGCCCCCAGCATAGCAAACACACAACTTTCCCCCTCCAGACCATCTGTCCAAAAACGCGAAACACCGGGAATACTTTCCCGGTTGTTATCCCCCTTCGTCGGTATCACCTCGTACCGCGTTAGGGCACACCTAGCACTGCGTATTGCCCTGTTATGCTTTGTGATTCTTTGATTGCTCTGTTATTTATTGTTTTCCCCATCCGTTACTTCTTTCCGGTAGACCCCGAGACTGCTGCCGATACCCCCGAGATCGACTACATCGACGACCCCCCCCCCTTCTTGCCGGAGCAACCAGGCAAGCCCCCCCTTGATCACCAGATATCGCCTATTCCTTCTCTCTACTGCTTGCATTAGAGT
Scaffold17397	Ensembl_Plants	rRNA	12819	13013	.	+	.	ID=gene:ENSRNA049468631	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CCACAATGCGGTTATGCCTCTAAGTCATGCATCGACACGTGGGAGATATAGCCGCATCGTGGGCGTTACAGCAAGGCTGTAAGGCGGAGCTAATCTGGAAAGATTACCTTAGTTCGGATTGTTCTTTGCAACTCGGGAACATGAAGTTGAAATCACTAGTAATCGCGGATCAGCAAGCCGCGGTGAATATGTACC	Scaffold17397	Ensembl_Plants	LTR/Gypsy	12349	12888	3752	+	.	ID=1221506	repeat_name=RLG_Erika_3B_035_C19-1	repeat_type=LTRs	sequence=CTTTTCTCGCTCTCATTTGCGTATGTTAGCCACCATATATGCTTATTGCCGCCGCAGCTCCACCTCATTACACTACCCGTTCCTATAAGCTTAAATAGTCTTGATCTCGCGGGTGTGAGATTGCTGAGTCCTCGTGACTCATAGATTCTACCAAAACAGTTGCAGGTGCCGACGATACCAGTGCAGATGACGCAACCGACCTCAAGTGGGAGTTTGAAAAGGAACATGGTCATTACTATGTTTCTTTTCTGGATGATCAGTAGTGGAGCCCAGTTGGGACGATGGATCTAGCATTTGGGGTTATCTTATTTTCTTTTGGATTTGACCGTAGTTGGTCTATGTGTGGATTTTGGATGATGTATGAATTAATTTATGTTTTGTGTGAAGTGGCGATTGTAAGCCAACTCTCGTTATCCCATTCTTGTTCATTACATGGGATTGTGTGAAGATAACCCTTCTTGCGACAATACCACAATGCGGTTATGCCTCTAAGTCATGCATCGACACGTGGGAGATATAGCCGCATCGTGGGCGTTACA
Pt	Ensembl_Plants	rRNA	98391	98507	.	+	.	ID=gene:ENSRNA049467964	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=TCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAA	Pt	Ensembl_Plants	LTR/Gypsy	98363	98589	1967	-	.	ID=2017371	repeat_name=sabrina_115G1-1	repeat_type=LTRs	sequence=GACCTTTGCATTTTAGATTTGGATCTTTTTCTTATTTCAAAATAGTGAAAAAGTCAAATAAGAGGTGTTAAGCTTTTTATCATTCTGGCATCGAGCTATTTTGCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAGGAAAGGCA
Scaffold879	Ensembl_Plants	rRNA	19177	19644	.	+	.	ID=gene:ENSRNA049467551	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=TTCAAGAGACGGAGTTCGACACAAGACAGCATGGCTTGGAGGAGTGGAGTCAAACTTGAATCTTTCAGTGAAGCCATCGTCTTGAAGATCTGCTTCAACACTCAGCAATGTCAAACTCTTCCAGGACCTCCGACAGGTTTCATGTGTAACAAAGGCATTCTTGGTGGCAAGATTGCGAATGTGATTGACGTCCACCAAGAGGCTTTGCATCTGCCGCTTCAACCAGAAGTGATGCTTAGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAAGCGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCGTTATGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGTT	Scaffold879	Ensembl_Plants	LTR/Copia	17120	19414	17214	-	.	ID=1189357	repeat_name=trep4210	repeat_type=LTRs	sequence=TAAGCATCACTTCTGGTTGAAGCGGCAGATGCAAAGCCTCTTGGTGGACGTCAATCACATTCGCAATCTTGCCACCAAGAATGCCTTTGTTACACATGAAACCTGTCGGAGGTCCTGGAAGAGTTTGACATTGCTGAGTGTTGAAGCAGATCTTCAAGACGATGGCTTCACTGAAAGATTCAAGTTTGACTCCACTCCTCCAAGCCATGCTGTCTTGTGTCGAACTCCGTCTCTTGAAGACTCTGATTATTCCTCCTCCGCTGCAACGGTGAATGCCAGAGTGATCGATGATCAAGATGATGCTACTTCACCACCTCCAACTTCAGCACGTATCGACACTGCACCAAGTTCTTCTGTACCGCCAAACTCCGACGCCGACCCTGCATCTTCTCCTACTCCTTCTGGGAACGAGTAGAGGCTCTCTGTCTTCAAAGCTTTTTGGTCCTTATTGACAAAAGGGGGAGAAGCATATGAGTTGATAGTCTTCAAGCGGGTCCAAATGGGCGGTTGCTTTATATTTGCTTTATATTTTTCCTAGTGTTTACAACTCTCACTTTTGATACATTTGGTTCTTTGAGTTGTAACACTTAAACTTGATGGTCGTTTGCTACTTGTTTGCTATTCTGTGATGCGATGATAAATTCCGCATGTGCGATGATAAATCCCGCACGAAATCATATTGCAGACGTCCATTTTTCATTATGCATGTCATTATCTTCGTTTTATCAAATCATGCACGATGAATTGTCTTCATAAGTTGAAGAGGATCTCCACAAGCACAACCTGCCATGTGCATTTGCATTCCAAAAGCAAATTACTTATATGCACATCTTCAGGGGGAGCCTTTTGCTACTTATGAAGACAATACCTTTATCCTTTACAATTTCACATACTTTTATCCCCGTTGAAAACTTCAACCAGTTTGTCATTAATCACCAAAAAGGGGGAGATTGTAAGTGCATCTAGTGCCAGCCCTAGTTGGTTTTGGAGTATTGACGACAAACCTGGTTGAGGGACTAATGTGTTTGTGAGAATTGCAGGATAACACAGGTAGTAGTCCCTCATTGATTCGGTTTACCTACCGGAGATGACCCCTAAAAATGTATGAAGACATTGAAGACAATGGTGATATGTGAAGATATTCACATTGAAGACTATGACAAGAGAAGGCATTGCGTGAAGACTATGGAGCGCGAAGACTTAGTTGTTTCGTTGTTTCCTTTTCTTCTTTGTTGAGTCGTAGGAACCACCGTACTGTTAAGTGGGGTCCCAGTGAACAAAGTCAGAGTGACTGAAGTGATGCTCAACCAAAATCCTATGTCTTCGAGCGAAGACAATGAGAGCAAACCTTATCCACAGCTGGATGAGTCAGCTTTACATGTAGCCCAAGTAAAGTTGCCGCGTGTGTTTGAAATCTGACCATTGGAACAGGTGTCAGTTCCTTAGTGACCCAGGGTCATTTCGGACAAATCAGGTCGGGTTGCCTAGTGGCTATAAATAGCCCACCCCCTACACCATAAATTGGTGGCTGATCGGAGTTATTGCACGGCTAGCACGGCTTTTGTCGTTTGAGAGCAACCCACCTCCGAAGCATTTGAGAGAGAGATCCTTGCGAGGTCAAAGCCCAAACCACCCAGAGCCCAAAGAGTGTTTGGCATCACAGAAGTCTTTCTGTCCGCGTGATCTGAAGACTTGTTACACTTGAGGACTGTGAATCCTCCAGCCGGTTAGGCGTCGCGTTCTGAGCATCCAAGAGTCATTGTGGATCGCCGGTGAACGAAGTCTGTGAAGGTTTGGAAGTCTACCTTGAAGACTTACCGGAGTGACTGGGCGAGGACTGGGTGTCCTTAGCTCAAGGGGAATAAGGTGAAGACGCGGTCTTCTGAGTTGAATCTCAGCCTCCCTAACCAGTACCGTTGTCACAGCAACTGGAACTGATCCAACAAATCCTTTGTCTTCACCAAGTGACTGGTTCTATCTTCTCCCTCTCTTTACTTACAGTTTGTCTTCGTGAAGTCATTGCCTGCTTGCATTACCTGTTTGACTTCACTATGTGACTTCCATCGTTGATTGGCTTCATACTATCTTCCGTCCTGATCTTTACTACCTAGCTGCTATTAGTCTTCGTACTTTCACTTCATTGAATACTTGACTATGGCTTGCCTAGTGTAGTCTACCTTCCGCTGCATATCAATAGGTTCATTTCAGGTGTTTGTCTTTGAAACTCTCATGTTTTGAAGACATTCATAAAAATTGCCTATTCACCGCCCCTCTAGTCGATAACTAGCACTTTC
Scaffold10084	Ensembl_Plants	rRNA	6507	7236	.	-	.	ID=gene:ENSRNA049467121	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GGAGCATGTGGTTTAATTTGATACAACGCGCAAAACCTTACCAGCCCATGACGTATGAACAACAAAACCTGTCCTTAACAGGATGGTACTGACTTTCATATAGGTGATGCGTGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGTGAAACCCTCGTGTGTGTTGCTGAGACATGCGCCTAAGGAGAAATTGCCACCGAGTGACGTGCCAGCGCTACTACTTGATTGAGTGCCAGCACGTAGCTGTGCTTTCAGCAAGAATTTCACCATTGGGAGCAGTGCCTTTCGAAGCACTTTCACGTGTGAACCAAAGTCGTCTTGCCCAAGACCCACGGAGACCTACCTATAGTGACGTCAAAGTACTAGTGAGCATGGAGGTTTGGTTGAAATTGGTTACGATGACGTCGAGTAGGCGGCGGAGGAAGACTCGGCATGAAGGCCAGAAAATGGTGTGGAACGTAGTGGTAATAGTACGTGCCCCACTCCGAAACAAAGAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGTGTAACACCCCGGATGTAACTTTCCATATGTAACTCCAACTCTTGCCATTTTCGGCTATGTGTTATGGTATTCCCTTCGTGGTCG	Scaffold10084	Ensembl_Plants	LTR/Gypsy	6012	6591	3774	-	.	ID=1223065	repeat_name=RLG_Erika_3B_035_C19-1	repeat_type=LTRs	sequence=TGTAACACCCCGGATGTAACTTTCCATATGTAACTCCAACTCTTGCCATTTTCGGCTATGTGTTATGGTATTCCCTTCGTGGTCGGGTTTTGTCTCTCATTTTGCATTTTGTTCATGTCATGCATCTCATATCATGTCATCATGTGCATCTCATTTGCATACGTGTTCGTCTCATGCATCCGAGTGTTTTCCCCGTTGTCCGTTTCGCAATCCGACACTCCCACATGCACCGGCGCAACCCCTCTTGTCTTTTTATGTGAGCGGGTGTTAAACGTTCTCGGAATGGACCGAGGTTTGCCAAGTGGCCTTGGTACACCACTGGTAGACCACCTGTCAAGTTTCGTTCCATTCGGAGGTCGTTTGATGCTCCAACGGTTAACCGGGTAACCGCAAAGGCCTTTTGGAGTGTTGCAGCCAAACACCCCTCCAAACAGCCCAATAACCCATCTAAGCCCCCTCCACGCTCTCGGTCGTTCGATCACGATCGTGTGGGCGAAAACCACACTCCATTTGGAGTCTCCTAGCTCCCACTATCTATAAATATGTGATCCCCTTCGAAATCCCCGGTCCCGAAACCCT
Scaffold10084	Ensembl_Plants	rRNA	61088	61753	.	-	.	ID=gene:ENSRNA049467103	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GGATTACTGTAGCATCATTACACCGGTGTGTTACAAAAACCTGTCCTTAACAGGATGGTACTGACTTTTATACAGGTGATGCATGGCTGTCGTCAGTTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAGCGAGACCCTCGTTTTGTGTTGCTGAGACATGCACCTAAGGAGAAATTCCCACCGAGTGACGTGCCAGCGCTACTACTTGGTTTCAGCAAGAATTTCACCATTGGGAGCCGGTGCCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCCAAGACCCACAGAGACCTACCTATAGTGCTGTCAAAGTACCAGTGAGCATGGAGGTTTGGTTGAAGTTGGTTACGATGACGTCAAGTTGGCGACGGAGGAAGACTCGGCATGAAGGCCAGAAAATGGTGTGGAACGTAGTGGTAATAGTACGCGCCCTGGTCCGAAACAAAGAAAAAGGTGCATGCCGCAGTCATGAGGGACTGCCAGCGAGATACTGGAGGAACGTGGGGATGACTTCAAGTCTGCATGGCCCTTATGGGTTGGGCCACAGACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCAGGAACATGAAG	Scaffold10084	Ensembl_Plants	LTR/Gypsy	61718	62643	2428	+	.	ID=680461	repeat_name=LTR_AC200826.1_72	repeat_type=LTRs	sequence=TGTAACACACCGGTGTAATGATGCTACAGTAATCCCTGAGATCAAGCTAATCATTTTGCTATAACAGTGCTTGGTCAGTTTGATCAATATCCCATTTCAAATTCCAGTTGAATTCAATTTGAATTTATGTGTGAAATTCAAATATGCTCAGACATGAAAACTAAAATGTTCATCATGTGGAAAATATTCTTCTGGTAATATTGGTGGTGAACCAACATTTTTGCAAAATGTCTAAGTGGCCTAAAATAGCTAAAACAGAAAAGCTTAAAAAAAGCAAAAGTTACAAAAAAGGGAAAAGGGCCAGAGCCCCTGGCCTCCCCTTGGGCTTCGGCCCACCCGAGCTAACAGCCCAGCTGGTCCGGCCTAGCCCCTCCCCGGGTCGCCTTCTCACCCTGTTCCCCCGACCGGGGTCGCAACAGGGGCGAGCCCCGCCGGACCGCCTCGACGGCGACTCCCCAGAGAGGATAAGGTCGACCCCTCCCCTCGACGCCTCGACCTCCTCCCCACCTACCTCCACTCCCCTGACTCGCCTCCCAGGTCCACCCCGCTCTCCGCCCCTCTCTGTCTCGGCCGCTCACCTCACCCGAGCGCCGTCGACGCCATGGCCGCGCCATAGCGATGACCACCCTCTTCCCCACACCGCGCCTCCCTGTCCATACGCTCTGTCGGCGTCGTCTACGCCGCCTACGCCAAGCGCCTGGAGCCGGGGAGCAACGGAGCGCCCGCATCACCGTCTTCTTCCTCATTGGCCCGGCGTACTCCGTCGGCGATTTTCTCCGGCGAGCTCTCCCCCAAGCCCGCTTTGCTCAACTGCAGGTCACGGTGAGCCCCTGCCTTCTTCCCCCCGCCCTTCTCATCGACGATCGTACCTTGTAGCCGCCATCCCTGCTGTGGCCGAGCCCTCCGCCACGGACGCTCGCCGCCG
Scaffold56794	Ensembl_Plants	rRNA	98212	98317	.	+	.	ID=gene:ENSRNA049466720	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCGTCCAGCAGAATGGTCTC	Scaffold56794	Ensembl_Plants	LTR/Copia	98300	99075	4282	-	.	ID=1604408	repeat_name=RLC_Barbara_3B_090_L01-2	repeat_type=LTRs	sequence=ATGATGATGGCAGCAGGAGCACTCCCAGCAATTTTCCCAAGGCAGCCACAAGATCAAGGAAAAAGAGAATCTCAGATTCTGAGGATGAGGACTATGTTGCTACAGAGGAGGAAGTGAGCTCCAAAAAGAAAGTTCTGAAGAAGGAGTATGGCACTGCTGCTGCAACCAAGCCTGGACTGAAAAAGAAGGCACCTGCCAAGTGAGTGCCAATGTCAAAGCCAAGGAAAGTTCCAACAGGAGAAACCATGAAATTCACAATAGAATCTGATGATGGTGAGGATGGGAAGAAGAGGAAGAAGGCCAGAACAACTTCTGCCAAAGTTCTTGGACATCCTTCTATGAGAAGAAGTGATGATGAAGCTGAAGAAGAGGATACTGCACCAGCACCCAAGTCCCAAAAGCTTATGGGGGATGCAATCAAGTCAGGGGTTGCTCCATCAAAGCCCAAAACTGCTCCCAAAGCTACTGCTCAAACTCAGAAGCCTTCTAAGCCCAAGAGAAGCACCAGGAACATACTGGCTGAAGACAAGAACAAGGCCCCAGTGCCAGAGATGCAAGAAGAAGATGATGAAGCCCAAGTGCTGAGAAAACTCAAACCAAATATTCCAGACCACAATGACACTCATTCAGTGGCAGAGGACGTGCACATCAGGAAGGATGCAGGTCTGAGACTTTGGAGGCAGAATGATCCTTATGCTGTGAGAAGGAGAACTGCAGTGGACTACAGGTTCCACACCAAAGAACAATAAGACTTCTATGAGACCATTCTGCTGGA
Scaffold26562	Ensembl_Plants	rRNA	147738	147841	.	-	.	ID=gene:ENSRNA049466068	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=ACTGCACCCGGCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAA	Scaffold26562	Ensembl_Plants	LTR/Gypsy	147831	148369	3075	-	.	ID=565488	repeat_name=RLG_Romani_3B_024_E11-1	repeat_type=LTRs	sequence=TAACATCCCCAATTTTCCATTTGGAATGTTATACATTAGATCATCATTGCATATCATATTTTATTGCATTTTGGCTTGATCCTAGAAATTCTACGCAACTCAAGGACCCACGGAGAGAGTTGGGGATTTCGTTATTTTCATATTTGAGTTTTTTCTCAAATTTTGAAAAGAGGATCGTTTGATTTTAATTATTTTCTCTTCGAATAATTCTTTTATGAAAAATAAAAGAGAGGGGATAAAATGACTTCCCCAAAATAAAGAAATATTGGAGATTTAATATTAAAATCAAATAAGAATTTTATTCGGATTGTAGCGCTATTTTATTTGAATTAGGAAAAAAAATTGCGTTTTTCGAAATTGCATTAGAGGCCCAAGTAAATGTTCACTTTGTCCGCTATATTTTTAGAAGACGGGGAAAATTTATTTTAGGATTTTTGGAGTGTGTTTAGTATTTCTTTTCTTCGTTTTTCTGCACGGAATTATTAAAAAAAAAGTCCACCGCCTTACCTTGCCGTGTTTGACTAGGACACTGCACCCG
Scaffold12183	Ensembl_Plants	rRNA	58678	58773	.	+	.	ID=gene:ENSRNA049465970	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGTAGTTAAGCGTCTGGTCGGAGAACCCGGCCGGCAACGGGCTTCAGCTC	Scaffold12183	Ensembl_Plants	LTR	58723	59055	2069	-	.	ID=1202272	repeat_name=LTR_AC200820.1_64	repeat_type=LTRs	sequence=CCTCCTTGTGGTCTTGCGCCTCGCGGCAGCACCCGGCGCGCCGACCATCCTCCCCAAACACCCTCACGTAGAGGGTCGCATCACCGTCATACTTGAAATGGAGGGTGCACCGCCTGCCTGGCCGCGCGCGCAGGCGAACGTCTGCCACCCACGGGCCAGAGCTATGTTGCCCGCGACGGAGACCTCGACTGCGACCCAGGAAGCCCTGCTGCAGCAGCCATCCGCCTGCAGCCAGAGCCCGCCTGGACCTGAGGCCGGCAGCTCTTCAGCGAAGAAGCACAGGAGCTGAAGCCCGTTGCCGGCCGGGTTCTCCGACCAGACGCTTAACTACG
Scaffold34148	Ensembl_Plants	rRNA	74854	74971	.	-	.	ID=gene:ENSRNA049465530	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=ATAACAATACCGGGCGCATTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCTGTAATTCCAGCTTCTT	Scaffold34148	Ensembl_Plants	LTR	74161	74899	4376	+	.	ID=1202400	repeat_name=LTR_AC200820.1_64	repeat_type=LTRs	sequence=CGGAGAAGAGAGAGGACGCGGAGCGCGTGGCCCGGCAAGCCACGGCATACTGCATCCAAGACGGCGAGTTATAGAGGAAACGGCCGAACGATGTCACGCTGCGCTGCATCTCCAGCGATCAAGGAAGGGAGCTGCTGATTGACATACACGGCGGGGACTGCGGGCACCACTCGTCGTCACGGACCCTTGTCGGCAAGGTGTTCCGCAGTGGATTCTACTGGCCTACAGCACTCAACGACGGAACCGAGCTGGTGAAGTCTTGCGAAGCTTGCCAATTCCACGCCAAGGAAATCCATCAGCCTGCTCAGGGCTTCCAAACCATCCCTCTCACATGGCCATTCGCGGTCTGGGGGCTGGACATCTTAGGCCCGTTCCCATGGGCGCCAGGGGGCTATCGCTATCTCTACGTCGCCATCGACAAGTTCACCAAGTGGGCAGAAGTGGAAGCTGTCTGTACCATCCCGGCTGGCTCTACCGTCAAGTTCATCAAGGGCCTCGTGAGCCGCTTCGGGGTCCCCAACCGCATCATCACAGATAACGGCTCGCAGTTTACTAGTAACCTCTTCAAAACCTATTGTGCTAACCTTGGAACACATATCTGCTACGCTTCGGTGACCCACCCCAGGAGCAATGGTCAGGCTGAGCACGCCAACGCAGAGGTCCTGAGGGGCCTCAAGACCAGGACCTTCAAGAAGAAGCTGGAATTACAGCGGCTGCTGGCACCAGACTTGCCCTCCA
Scaffold60557	Ensembl_Plants	rRNA	64683	64774	.	-	.	ID=gene:ENSRNA049464569	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold60557	Ensembl_Plants	LTR/Copia	64644	64988	2999	-	.	ID=2084447	repeat_name=trep3125	repeat_type=LTRs	sequence=AACTCCGTCTATGTCTTTTAGGCACAGCCGGTCCCAAGCCCAGGTAAAGGAGGAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCCATGGGTATGAAACCTATTTGAGCGAGAGTAGTACTAGGATGTGTGACCTCTTGGGAAGTCCTCGTGAAAGGGTTTCATATATAAGGGTTGTGATAGGCTTGGCGAGCCAACATAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGACAAAAGGCT
Scaffold671	Ensembl_Plants	rRNA	12735	12865	.	-	.	ID=gene:ENSRNA049463892	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTAACCGTGCACAAATTCCCACACTCAACATGATATACGGTCTAGATGC	Scaffold671	Ensembl_Plants	LTR/Copia	11596	13222	8881	+	.	ID=2067033	repeat_name=RLC_Inga_3B_030_O03-1	repeat_type=LTRs	sequence=GCAAGCTCAAGATCAAGAACAAGTTCAAGACGACGCTCAAGATGATCAAAGTAACTGCTCCTCAACTCACTCCTGAGGAGGAATTGGAGTGTCGTGCCGCCAAGATTGCATCAAAGCTCTCTACCAAGGGTCATCTCATGAGAAATGTGCTTGGAAGCATTCGAAAAGGGGTAAGCACTCGTAGACAATTGGCAAACTATTGTGAACATCACACTTTTGTCTCTTGTGTTGAACCCCAAAAGGTCTATGAGGCGCTCGAAGATCCGGATTGGCTCAATGCCATGCATGAAGAACTCAACAACTTCGAGTACCACAAGGTGTGGAGATTGGTGCCAAGGCCACCGGGGAACCACAATGTCATTGGAACACCAAGTGGATATTCAAGAACAAGCAAGATGCTCATGGAACAATAGTTCGCAACAAGGCAAGATTGGTAGCACAAGGCTACTCCCAAGTTGAGGGTATCGACTACGGTGAAACCTTTGCTCCCGTTGCTCGCCTTGAATCCATTCGTTTGTTGATTGCTTATGCTTCTCATCATAAGTTTAAGTTACAACAAATGGATGTGAAGAGTGCTTTTCTTAATGGTCCTATTAATGAGTTGGTGTATGTTAAGCAACCCCCCGGGTTCGAGGATCCCTACTTCCCCGATCATGTGTATCAACTCGACAAGGCACTCTATGGCCTTAAACAAGCCCCACGTGCGTGGTATGACCACCTTACCGAGTTGTTGCAAGATCGTGGATTTGAAGTTGGGAAAATTGACCCCACTCTTTTTACTAAGAAGGTCAAAGGGGAGTTGTTTGTGTGCCAACTATATGTTGATGATATTATCTTTGGTTACCATAACAAAGCTTTCAATGAGGAATTTGCCGCTCTCATGACCTCTAAGTTCAAGATGTCTTCGATGGGAGAGTTGAAGTTCTTCCTTGGATTCGAAGTCAAACAAAGAAGAGAAGGAACCTTCATCAACCAAGCGAAATACACTCAAGACATGCTAAAGAGATTCAAGCTAAGTGATGTCAAGTCGGCTTCCACTCCAATGCCCACCAAGTGCCAACTTGACATTGATCCCAATGGTAAAGCGGTGGATCATAAGGTATATCGCTCCATGATTGGCTCCTTGCTTTACCTTTGTGCATCTAGACCGTATATCATGTTGAGTGTGGGAATTTGTGCACGGTTAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTAGGTTATTCGGACTCGGAGTGGGCGGGAGACAAAGTAGATAGGAAGTCCACTTCCGGAGGGTGCCAATTCCTTGGTTGCTCTTTGGTAAGTTGGTATTCTAAGAAGCAAAGTTGTGTGTCTCTCTCGTCCACCGATGCGGAGTATGCGGCGGCCGGTAGTTGTTGTGCACAAATTCTATGGATGAGGCAAACTTTAAAGTATTACGGTGTCATTTGTGACAAAGTGCCTCTTTGGTGTGATAATGAAAGTGCCATCAAGATTTCTCTCAACCCGGTGCAACACTTCAAGACGAAGCATATTGAGATTCGGTATCATTTCAT
Scaffold19758	Ensembl_Plants	rRNA	46725	46847	.	+	.	ID=gene:ENSRNA049463798	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTTTGACCACGGAGTGCGATTT	Scaffold19758	Ensembl_Plants	LTR	46754	46828	358	+	.	ID=2109252	repeat_name=LTR_HVVMRX83KhA0218N24_v68_c1_680	repeat_type=LTRs	sequence=GATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTT
Scaffold65083	Ensembl_Plants	rRNA	59114	59204	.	-	.	ID=gene:ENSRNA049463525	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGAGTTT	Scaffold65083	Ensembl_Plants	LTR/Copia	59063	59433	3067	-	.	ID=2084451	repeat_name=trep3125	repeat_type=LTRs	sequence=GAACTCCGCCTATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGTGATAGGCTTGAAGAGCCCACGTTTTTTTCCCACCGTAAAAACTAGCCAGTCCCATAGGTATGAACCCCATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGAAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAACCAACGTAAAAACTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGAGTTTCATATCTAGCCTACCCCAACTTGTTTGGGATAAAAGGCTTCGTAAGTAAG
Scaffold103174	Ensembl_Plants	rRNA	4840	4931	.	+	.	ID=gene:ENSRNA049463264	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold103174	Ensembl_Plants	LTR/Copia	4781	4981	1767	+	.	ID=2084449	repeat_name=trep3125	repeat_type=LTRs	sequence=AAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCAACTAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCCAGCCTACCCCAACTTGTTTGGGACAAAAGGCTTAGTAAGTAAGT
Scaffold80493	Ensembl_Plants	rRNA	12476	12941	.	-	.	ID=gene:ENSRNA049462805	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AAGGTCTTTCATTGAAAAATTCTTATTCAAGTATCCTTTTATGCTATCCTGAAATTCTATATCATTTCCGATCAACAATATGTCATCCACATATAATATCAGAAATGCTACAGAGCTCCCACTCACGTTCTTGTAAATACAGGCTTCTCCAAAGAATTGTATAAAACCACATGCTTTGATCACACTATCAAAGCGTATATTCCATCTCCGAGAGGCTTGCACCAGTCCATAAATGGATCGCTGGAGCTTGCACACTTTGTTAGCACCTTTTGGATCGAAAAAGCCTTCTAGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCAAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAACAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGGACGGAGACGT	Scaffold80493	Ensembl_Plants	LTR/Copia	12651	12981	2605	+	.	ID=1520159	repeat_name=RLC_Angela_3B_016_K12-3	repeat_type=LTRs	sequence=TAGAAGGCTTTTTCGATCCAAAAGGTGCTAACAAAGTGTGCAAGCTCCAGCGATCCATTTATGGACTGGTGCAAGCCTCTCGGAGATGGAATATACGCTTTGATAGTGTGATCAAAGCATGTGGTTTTATACAATTCTTTGGAGAAGCCTGTATTTACAAGAACGTGAGTGGGAGCTCTGTAGCATTTCTGATATTATATGTGGATGACATATTGTTGATCGGAAATGATATAGAATTTCAGGATAGCATAAAAGGATACTTGAATAAGAATTTTTCAATGAAAGACCTTGGAGAAGCTGCTTATATATTAGGCATCAAGATCTATAGAG
Scaffold48713	Ensembl_Plants	rRNA	31885	32380	.	+	.	ID=gene:ENSRNA049462744	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GAGTTGGCATAGATCGAGATTAGGATTTGTCACTCCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACA	Scaffold48713	Ensembl_Plants	LTR/Copia	31434	31921	2276	+	.	ID=63692	repeat_name=Angela1_AT_LTR	repeat_type=LTRs	sequence=GAAATATGCCCTAGAGGCAATAATAAAGTTGTTATTTATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTGACCGGAAACTTAGTACATGTGTGAATACATAGACAAACAGAGTGTCACTAGTATGCCTCTACTTGACTCGCTCGTTGAATCAAAGATGGTTAAGTTTACTAGCCATAGACATGAGTTCTCATTTAATTAACGGGATCACATCATTAGAGAATGATGTGATTGACTTGACCCATTCCGTTAGCCTAGCACTTGATCGTTTAGTTTATTTGCTATTGCTTTCTTCATGACTTATACATGTTCCTATGACTATGAGATTATGCAACTCCCGAATACCGGAGGAACACTTAGTGTGCTACCAAACGTCACAACGTAACTGGGTGATTATAAAGGTGCTCTACAGGTGTCTCCGATGGTACTTGTTGAGTTGGCATAGATCGAGATTAGGATTTGTCACTCCG
Scaffold48713	Ensembl_Plants	rRNA	31885	32380	.	+	.	ID=gene:ENSRNA049462744	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GAGTTGGCATAGATCGAGATTAGGATTTGTCACTCCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACA	Scaffold48713	Ensembl_Plants	LTR/Copia	31432	31921	4142	-	.	ID=1854760	repeat_name=trep4060	repeat_type=LTRs	sequence=CGGAGTGACAAATCCTAATCTCGATCTATGCCAACTCAACAAGTACCATCGGAGACACCTGTAGAGCACCTTTATAATCACCCAGTTACGTTGTGACGTTTGGTAGCACACTAAGTGTTCCTCCGGTATTCGGGAGTTGCATAATCTCATAGTCATAGGAACATGTATAAGTCATGAAGAAAGCAATAGCAAATAAACTAAACGATCAAGTGCTAGGCTAACGGAATGGGTCAAGTCAATCACATCATTCTCTAATGATGTGATCCCGTTAATTAAATGAGAACTCATGTCTATGGCTAGTAAACTTAACCATCTTTGATTCAACGAGCGAGTCAAGTAGAGGCATACTAGTGACACTCTGTTTGTCTATGTATTCACACATGTACTAAGTTTCCGGTCAATACAATTCTAGCATGAATAATAAACATTTATCATGATATAAGGAAATATAAATAACAACTTTATTATTGCCTCTAGGGCATATTTCCT
Scaffold39588	Ensembl_Plants	rRNA	29586	29677	.	-	.	ID=gene:ENSRNA049462398	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAAGTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold39588	Ensembl_Plants	LTR/Copia	29536	29881	3048	-	.	ID=2084452	repeat_name=trep3125	repeat_type=LTRs	sequence=TATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGTGATAGGCTTGCAAGCCAACGTAAAAACTAGCCAGTCCCATAGGTATGAAACCCATTTGAGCGAGAGTAGTACTACGATAAGTGGCCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAAGTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGACAAAAGGCTTCGTAAGTAAG
Scaffold53060	Ensembl_Plants	rRNA	47730	47828	.	+	.	ID=gene:ENSRNA049462306	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CCACTCTGTCGCCGCCGCCGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAG	Scaffold53060	Ensembl_Plants	DNA/En-Spm	42783	47753	28093	+	.	ID=705727	repeat_name=DTC_Boris_3B_039_D24-1	repeat_type=Type II Transposons	sequence=ACTACTAGGAAAACTCTTATACACAGTAGCATAGTAGTAGCGCGGGAAAGAAGTAAACGCTGCTGCTATTTAGCAGTAGCACTTTTCCAGGAAAGCGCTACTAGTAACCCCATAGTAGTAGCGCTGTGAAGTAGAAAAGCGCTACTACTATGTGGGACCAGACGAGGCCACCGACTGTTTTCGTAGTTGTAGCGGTGTACAGAAAAAGCGCTACTACTAACAGTTTAGTAGCAGCGCTCTGTTTTTATGCGCCGCTACTGCTAGTGGGCCCTCCTTAGTAGTAGCACTTTTCCTGGAAAGCGCTACTACTAAGTCCTATAGCAGCAGTGCTTTTTGCAAGGCAGTGCTATTGCTAGTTGCGGCTGGTGCCACCTTTTCCACCGCCTTCATTAATGGCACCCTCCTCCATAAATGGCCTCTCTCTTTCTCCTACACCTCTCTTCTCTCCCCCATTAATGCCCCCATCCACCATAACCCCTCTCCATTAGTTAGCTAGCTAGATTCACCTCTCCTCCCCAACAATTAGATCTAGCTAGCTATTTAGCCAACCACCCTCCTCCACATCATCTAATTAACCGCGTGCGCTCGGTCTCTCTCAGGAGATATATATAGGTGAGTAAAAAGTTGTTCATTTCAAGAAGAATATGTGTGTGAATGAGAATATGTGTGATCGGGATATATATATATATATATGTATATATATGGAGAGATTTGTGCTAGTGACATGCCCTCGAGTTGCTTATGTTTTGCCGAAATGTCGATATATTTACGTTTCGTTGAATTTCGAGCAAACTCATATGTCCTATTTTTAGGCAAGGTCATGCCAAAAATTTATATATATGACTTTGAAGGATGCATATTTATTTCATAACCCTTTTGCTTGTTATACCATGCAGTCGGTCATGAAGGTGAGTGGATGGAAGGTGGAGCGGTACATGCAATCCGTGGTTATGGACATGTATGCAAATAATCGGACTAGGATTAGATGTCCGTGTGCAAGATGCAAGGAAGGAGTCCTTTTGGACCGTTTTGATCGTGGCACTTTGAAGGAGCACCTGCTGATGAATGGTTTCATGGATGGCTATACTCAGTGAATAAGTGAAGAAGAAGATGATGATGAAGACGTCCACATGGCAGGGAATAACGACATGGGGCTAGACGAAGAGATGACCGATCGACAAGAAAGACAATGGCGCCGGACATGGCGACGGGGAAGAGTCCGGAAATAACAGCGGCGGAGAAGATTCTGGACACGGCGAAGAAGAGGCCGGACATGGCGGAGAAGAGGCGGCGGTCACGCCGCAGTCTTCGACACTACTAAGTGCAGTCGTGCAGGACCCTCATGTTCGAGACCTCCTTCGCAAGAGTATGACAGGCGAGAAAGCTGCTTCTAGAGAGGAGGCCAAGCCGGTGCAACTTGTAGTAGACTCGAGGACTCCATTATATGACGGTTGCGATCCTGAGGTGACCTGATTGAGTTTCACGCTCGAACTTCTAAAGACGAAGGCCAAAAACAAATGGACAGACAAAAGCCTCGATGAGCATTTGAAGTTTCTACATAATAAAGTTCTTCCCGCGGGGAACCTGTGTCCTACTAGTGTAGAGGAGGCCAAGAAAATCGTTTGCCCTTTTGATTTTCCACGCATTAGGTACCATGCATGCATTAACGATTGCATCATTTATCGGGGGGAGCACGCGGGAAAAACCAGTTGTCCAGTGTGCAATGGTTCTCGATACAAGAAGGCAGGAAAGAAAGCTCCTCAGAAAGTTGCATGGTACTTTCCGATCACTCCCCGTCTGCAGCGGTATTTCATAGATCCAAAGGAAGCAAAGCTCGAATGCGCTGGCACGCGGAGAGGAAGAAGCCCGACGATGGAGATGATCTGAGGCTGAGACACCTCGTAGATGGTAGCCAGTGGAGAGCATTCAACGCCGTATATGGATTTGCTGCAGAAGATCCAAGGAATATCGTGCTTGGTGCGAGTACCGATGGCATGGATCCGTTTGGAAACCAGAACACCAACCACAGCACATGCCCCGTGTTTGTATGGATGTACACCCTCCCACCATGGAAGTGCATGAAGACAAAGTACATACACATGAGCATGCTGATTGAAGGGCCGAAACAACCAGGAAATAGTATTAACCTGTATATGGGGCTTCTGCAAGAGGAGCTAGACACGTCATGGAAAACACCAGCATGGACATGGGACGCCAGCAAAGGAGAATATTTCCATATGAGAGCTGCGCTGATGGCGACGGTGCACGACTATCTCGGTTATGGGTACACCTCAGGCCAGGTGTGCCACGGATACTGTGGATGCAAGAGGTTCATGGATGATACAATGTCTCAGCAGCTCACATCAACGAAAGATGGTGGGTCCGGGAAAATCGTGTACATGGGGCATCGTAGATGGCTCGAGAAGGATGACCCATGGAGAAAGCATGGAGATCTATTTAGTGGGTTGGCTGAGCTTCGAGGACCCCCACGTAAGAGGAGCGGCGCCGAAATCGACGAGCTGTTGAGAAACTGGGAACAATGCCCCCCACCGGCAAAGATCAAAAAGGCGCCGGAGCCGCTGCTGAAGGTATGGAAAATGAGGTCTGTTTTCTAGGACTTGGAGTACTGGCCCAATCATGACACGCCTCATTGCCTTGATCTAATGCATATCACGAAGAATGTCCTCGAGAGCTTGCTTGGCACACTGATGAACATGCCGGAGAAGACCAAGGATGGGCCGAAGGCAAGGAAAGACTTGGAATATTTGAAGATCAGGAAAGATCTCCAGCGTAAAAAGTTGATGGAGGAGACGGAGACGGAGGAGGGGGAAAGGGGCAGAAAAGTCAACAAGAAGGAGGAGAATTATTGCCCCCTTCTTGCTTCACCTTAAGTGCGAAGGAGATCGATCAATTCATCAAGTGCCTTATGGGAATCAAAGTCATTTCCGGTTACTGTGGGAAGATAAGCAGATTTCTAGACCCCAAGAACAAAAGGTTCAGCGGGATGAAGTCTCATGACTGTCACGTGATGATGACGCAGATACTCCCGGTTGCCATTAGGGGGATAATGGAGAAGCACGTCCGGGACATGCTTACTGGTCTCTGAAACTTCTTCAACGCTATATCTCGAAAGTCCATAAGTGTGAAGCAGCTCCGAAGGCTACAGGAAGAGATTGTTGTCATACTATGTGAGCTTGAGACGTACTTCCCGCCCGCGTTCTTTGATGTCATGGTGCATCTGTGTGTCCACATCGTGGATGACATCATCGACCTCGGGCCGACATTCCGTCACAACATGATGCCGTTCGAGAGGATGAATGGGGTCATTAAAGGATTCGTTCATAACGTGTCCCCTCCGGAAGGGAGCATCGTCCAGGGGTATCTGACGCATGAGTGCGTCTCCTTTTGCGAGAATTATATAAGCGTCGGAGACCCTGTAGTTGGTTTCCCCGTCAAGAAGCACGATGGGAAGCGCAAAGGAGATGGTCACAACAACGGCCGGAGGGAATTGCACGTGGACTACTCGGATAGACGGAACGACTTTGACAGGGCTAACTTTGTAGTGCTACAACACCTAGATGTGGTAGATGATTATGTGGCAAAGCACAAAGAAACCATCGCAAAGAAGTACCGTGATAAGGGGATGCTCAAGATGGACGACGAAGTTACTGTAGAGCACAATGCCACTTTCTTGCGCCGGTTTAAACATCAAGTTCTCGAAAATCCCCCAGAAGAGGGCAGTTCGGATGGATTGCTCGTACACACCTTAGCACATGGCCCCGCGCCCAAGCTCGCGACCTATCAGTCCTATGATATCAACGGGTACACGTTCTACACGGAGGCCAAAGACATGGAAAGTGATTACCAGAACTCTAGTGTGACAATTCAATGTGTGACTGACGCCAACGGCACAACTGAGAGATTCTACGGAAGGGTCGAAGAGATATGGGAGCTTGACTATGCTGGAATGCACGATGCGACGATGTTCCGTGTCAGATGGGCCAAGGACGTAGTAAGAGAAAACAAGTATTTCACCACCATGTCTATACCCGACGCGAAGAGCACTCCCGTGAACTTTAACGTCATTGCCAAAATGAGCCATGGGTACACGCTAAGCACGTGACACAATGCTTCTTCATAACCGACCCAGCCAATCCCAGCCGTGTTGTCGTGAGGAGATCCAAAAGGAGCATCGTCGGAATGGATGGAGTAGCCAAAGAGGAAGACTACGACCAATACGGCAACCCGATGAGGGAAGATGACGATGACGATGAAACATACGTGAAAATAAGAATAAATACTACATTACCTAAGGAAGATCGTAATCCATGGCTCCAGAAAAGTCACAAGGAGGGGCTCAATTACTCGGGAACGAACAAGAAAGGGAAGAAGCTCAATGTGAAACATCGTCGACGCAGCTGATCAGAAACCTACATCTATATATATGTATCTATTTTGTGTACGCACTTAAGTAACGGTTATCGGTCAACTGATATGTTACCACCACATGCATGCTTCCGGTGATATGCGCGCAGTGGGGGAGAGGGAGACGTCGCCGTCGAGAGAAAAACGAAAAAACAAAAACCAAAGGGAGAAACCAGTACAAAAGAAAAAGGAAAGTAAACAGAAAAGAAAAGGAAAATAATAAAAGAAAAGAAAATTAAAAACTAGAAAAGGAAAATAATAAAAAGAAAATAATAAAAATTGGAACAGTTAGCAGTAGCGCTGGATTGAGAACCAGCGCTATAGCTACTATAGCTATAGCGTTTTGTTCTAGAAAAGCGCTACTACTATGTGCCATTAGCAGTACGCTGCTTTACAACCCACCGATATAGCTATAGCGCTGGGTTGTCATGCAGCGCTACTGCTATTTTGAGTTAACCTCAAATTTGGCCAACCGCCAAGTCCCAATTCTCCCCCGGCCACTCTCCCCACACCCTTTTCTCCCACTCTGTCGCCGCCGCCGTCGC
Scaffold113603	Ensembl_Plants	rRNA	43578	43785	.	-	.	ID=gene:ENSRNA049461953	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CATTTTTAGGATTTATTTAATTATTTTAAATCAACATTATCCTGAATAGTGTTTGCTGACGTCATCATAACGTCAACATGACAAACGAGACCTTAGCCTGCTAACTAGCTATGCGGAGCCATCCCTTCGCAGCTAGTTTCTTAGAGGGACTATCACCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGAGGCCCTTAGAT	Scaffold113603	Ensembl_Plants	LTR/Gypsy	43703	43955	1637	+	.	ID=1432129	repeat_name=RLG_Latidu_3B_049_D02-1	repeat_type=LTRs	sequence=GTCATGTTGACGTTATGATGACGTCAGCAAACACTATTCAGGATAATGTTGATTTAAAATAATTAAATAAATCCTAAAAATGATTTAAATCTTTTAAAAGTAATATAAAATAAACCGTAGCTCGGATGGAAAAACTTTGTACATGAAAGTTGCGCAGAACGACGAGACGAATCCGAATACACGGCCCGTTCGTCCGCCACACATGCCTAGCATAGCACACACGCAACGTTCCCCCTCAGGCCCCCCTCGCCG
Scaffold113603	Ensembl_Plants	rRNA	43578	43785	.	-	.	ID=gene:ENSRNA049461953	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CATTTTTAGGATTTATTTAATTATTTTAAATCAACATTATCCTGAATAGTGTTTGCTGACGTCATCATAACGTCAACATGACAAACGAGACCTTAGCCTGCTAACTAGCTATGCGGAGCCATCCCTTCGCAGCTAGTTTCTTAGAGGGACTATCACCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGAGGCCCTTAGAT	Scaffold113603	Ensembl_Plants	LTR	43705	44067	1046	+	.	ID=2057633	repeat_name=LTR_AC200843.1_92	repeat_type=LTRs	sequence=CATGTTGACGTTATGATGACGTCAGCAAACACTATTCAGGATAATGTTGATTTAAAATAATTAAATAAATCCTAAAAATGATTTAAATCTTTTAAAAGTAATATAAAATAAACCGTAGCTCGGATGGAAAAACTTTGTACATGAAAGTTGCGCAGAACGACGAGACGAATCCGAATACACGGCCCGTTCGTCCGCCACACATGCCTAGCATAGCACACACGCAACGTTCCCCCTCAGGCCCCCCTCGCCGGTATCACCTTTACTACCGCGAGGGCACACCTAACACCGCTCATTGTCTTGTCATGCATCGTCATGCATATGTTTGCTTTTATATTTATTGTTTCTTCCCCCCTTCGCCGGTA
Scaffold14527	Ensembl_Plants	rRNA	32965	33056	.	+	.	ID=gene:ENSRNA049458923	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold14527	Ensembl_Plants	LINE	32903	32996	694	+	.	ID=2193319	repeat_name=RIX_Stasy_3B_001_C11-1	repeat_type=Type I Transposons/LINE	sequence=ATAGCCAGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGTGATAGGCTTGGCGACCCAACGTAAAAACTAGCCAGTCTTTTGGGTATGAAACCCA
Scaffold14527	Ensembl_Plants	rRNA	32965	33056	.	+	.	ID=gene:ENSRNA049458923	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold14527	Ensembl_Plants	LTR	33021	33094	350	+	.	ID=2199028	repeat_name=LTR_AC197531.2_9792	repeat_type=LTRs	sequence=GGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGATAAAAGGCT
Scaffold15227	Ensembl_Plants	rRNA	54876	55831	.	-	.	ID=gene:ENSRNA049456815	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=ACCGACGCGATGGTGAAGATCATTTTGGAAAAGACTTTAAAATTAGTGGGATGTGTTTGGGAACAAAACATAATACCCCATATAAAACTTCCTTCAAAAAGGATTTTCGAAATCCCGTCCATAAAAAACATGAACTCGAGTCGTATTCGTTAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCTGGATACCTGGAGCCCATTACGAGTTCTATAAGGTAAAGCCAATGATTAGCCATTTTTGGTAAGTAGAACTGGCGATGCGGGATGAACCGGAAGCTGGGTTATGGTGCCCAACTGCGCGCTAACCTAGAACCCAGAAAGGGTGTTGGTCGAATAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCTGCGCGGGCCGCTTCAAACCCCGGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCTGAACAGGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGACAGCGCGATTACACGCATCCCCCGAAAGGGAATCGAGTTAAGATTTCCCGAGCCGGGATGTGGCGATTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCGTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCTGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGAGTCCAGTGGCCAGAAGAGCACCGCACGTTGCGCGGTGTCCGGTGCGCCCCCGGCAGCCCATGAAAATCCGAAGGACCGAGTACCGTTCACGCTCGGCCATACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCC	Scaffold15227	Ensembl_Plants	LTR	55681	56410	3743	+	.	ID=1748490	repeat_name=trep4238	repeat_type=LTRs	sequence=ACGAATACGACTCGAGTTCATGTTTTTTATGGACGGGATTTCGAAAATCCTTTTTGAAGGAAGTTTTATATGGGGTATTATGTTTTGTTCCCAAACACATCCCACTAATTTTAAAGTCTTTTCCAAAATGATCTTCACCATCGCGTCGGTACCAAACCATCCCGAGTTGGCGACCTGCGGCAGACGGATCGTCGCTTCATTGAGCCAAGCCCATCCTTATCGGATCATCAGCTCGGCAAGCAAAACAAGAGTTCGGCATCGTGAAGACTAAATTATCACCAACACCTCTCACCCCACGGATTGCACGGGTCAGGCGCGCCGACATCGCGGGTCGGTCTCTTCATCAATCCGGCTTTGACCACGTCACAAGTTATGACCAGCGTCGGCATGGCCGCACAGTTTCTCTTCTTGAAGCTGATGTCCATCACACCGAACTGCTTCAACACCTCTGCTGACATGGCCGCTGCAACGTATCCTGACCGACCTGCTCTGTTACCTCGGCCTAGACCGGGGGCTTCTCCATCTCTTCGTCACCCCACTCCGGAGACTTCGGCGTCACCGGCCGACCAGCTTCGTCACATTAGCCGGACCGGGGGCTTTGCCTCGGCGAGCCAACCTTTCCCAGCATCGCCATGCCATTGCTTCATTGCCCATCAGGCAATGGGTGTGCGGATCGAGTCCCAATTCTGGGAGTAACCATTCTTCATATTGCTACAACAGATAAACCAG
Scaffold11182	Ensembl_Plants	rRNA	11726	11829	.	-	.	ID=gene:ENSRNA049456693	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=GTTCGAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGG	Scaffold11182	Ensembl_Plants	LTR/Gypsy	11821	13855	15386	-	.	ID=1081672	repeat_name=RLG_Sakura_3B_068_G05-1	repeat_type=LTRs	sequence=CCCCCCTGACGTGAAATCACCGCCAACCTCTCCTATAAATACAGAAGCCTCGAGAAATTAACCTAGATCGGAAGTTCCGCCGCTGCAAGCCTCTGTAGCCACGAGAAATCAATCTAGGCCCTCTCTGGCACCCTGTCGGAGGGGGCCATCATCACTGGATGCCATGGAGGAGGATCCCGGAGGGGCCTTCATTGCCATGAAGGCCAAGGACCAGAGGGAGAACCTCTCCCCATCTGGGGGGGAGGCCATGGAGGAGGAAGCACAAGGGGGAGAACCTCTCCTCCTCTCTCTATCGGTGGCGCCGGAGTGCCATTGGGAGGGGAATCATCACCGCGGTGATCGTCTTCATCAACATCACCATCATCATCACCATCCTCATCTCCATTACGCGGTTCACTCTCCTGCACCCCGCTGTAATCGCTACTTGAACATGGTGCTTTATGCCACATATTATGATACAATGATGTGTTGTCATCCTATGATGTTTTGAGTAGATATCCTTTGTCTTTGGGTTGATTGATGATCTAGATTGTCACGAGTTGTATGTTTTATTTTGGTGCTGTCCTATTGTGCCCTCCGTGTCGCGCTAGCGTGAGGGATTCCCGCTGTAGGGTGTTGCAATACGTTCATGATTCTCTTATAGTGGGTTGCTTGAGTGACAGAAGCATAAACCCGAGTAAGGGGGTTGTGGCGTAAGGGATAAAGGGGACTTGATGCTTTAATGCTATGGTTGGGTTTTACCTTAATGATCTTTAGTAGTTGCAGATGCTTGCTAGAGTTCCAATCATAAGTGCATATGATCCAATAAGAGAAAGTATGTTAGCTTATGCCTCTCCCTCATATGAAATTTCAATGATGACCACCGGTCTTGTTAACAATTGCCTAGGACAAATCCGCACACCGACCCATCATTATTCCACACTCGCTATTTATAATATTTAGTAATATATTCTAACTTTATGATAACAGAACCTACTTTTATACTTTAGCTCTCCGATATCATGCAAAGTTATCCTCTTCATACCCACAACGTAGTTTTATTTCCCGTTTCTATTTGGAAGCACACGTTCGGTTCGGTGTACGTAGAGTCGTATCAGTGGCAGATAGGACTTGAGAGAATATTGATCTTACCTTTAGCTCCTTGTGGGTTCGACACTCCATACTTGTCACTTCCACCATTGGGAATTGCTACGATGATTCCCTGCACTTGGGGATTATCAAGCTCTTTTCTGGCGCCGTTGTCGGGGAGCAATAGCGTGGGGTTGATATTCTCGTGTGTGCTTGTTTGCTTTCTTCACTAAGTAGATTTTGTTTTTCCTTTTTGTTTCTGTTTAGCTGTGGGTGAAACATACAAAAAAATTAAAAGAATGAAAATACCAAAAAAAAAACTTGCTTCTCATGCTCTCATGCCTAAAAAGTTTTTCAAAAAGAGAAGTGATTGGAAAGTTATGCATTGAAGAAGTGAGGGTCGACCTTGAGTACTTGTGTTCATGCTCACGGAAACAATGTAGAATTTTTCATGGAAGTTTCTCTGTAAATAATTATCCCCTTGTGTATATCCATTGTATTATAAAAATAATGTGCCAAGCTTTGGTTTTAGGATGATTAGATTGCTTGTTTACTATGTGCAGAACAAAAACAGAAACTTTGGCTGTAGCGCGTGATTTTACATTTTTTACTGGAAGGTCAAATGGGTCTGAAACTTTTTTCACATTACTTCTGTACAAATTGTTCGAATTGTCAAATTTATTTCATAATTTTTGGAGTTACAGAAGTTTACGAAACTTCCAGATTACTACAGACTGTCCTGTTTTTGGGAGATTCTGTTTTCTATGAGTTGTTCGCTTATTTTGATGAATCTATGGGTAGTATCGGGGGGTATGAACCATGGTGAAGTTGGAATACAGTATATATAGTTCTAATATGAAATTGTAATAAGTTTGCAACAGTACCCAAAGGTAGTGATTTGCTTTATTACACTAATGGATCTCACAAAGTTTTTATTAAAGCTTTGTGTGGATGAAGTGTTCGAAG
Scaffold26627	Ensembl_Plants	rRNA	30865	31164	.	+	.	ID=gene:ENSRNA049456118	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=CTCGTGGCGCTGGCATGTTACGTGCCCGCTGCTATCAAGGCAACCTACTCGGATAACCATAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCTGGCTCTGCTCGCTGATCCGATGATTCAAGATAAATCGACGAATCGGACGGCCTTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCGTATTTCGATGGTAGGATAGGGTCCTACCATGGTGGTGACGGGTGATGGAGAATTAGGGTTCGATTTCGGAG	Scaffold26627	Ensembl_Plants	LTR/Gypsy	30903	30939	280	+	.	ID=2210348	repeat_name=LTR_Al_scaffold_0003_560	repeat_type=LTRs	sequence=GCAACCTACTCGGATAACCATAGTAATTCTAGAGCT
Scaffold110675	Ensembl_Plants	rRNA	11330	11670	.	-	.	ID=gene:ENSRNA049454415	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=AATGTATATAGACATATATTAGAGTGTAGATTTACTCATTTTGCGCTTCATTGAAAAGGCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACACCTCTATGTCAGAATCTAAGCTAGCATGCGACATTTGTGCCCGCCGCCCACCCTGTGCCCATGCCATTGGCTAAGACGGTCCGACCGACGTGTCGCGGCCGGCCGCCTCGAAGCTCCCTTCTCAACGGGCGGTGGGCTGAATACTTTGCAGACGACTTAAATATGTGACGGGGCATTGTAAATGGCAGAGTGGCCTTGCTATCATGATTCATTGAGATCCAGCCCCATATCACACGGATTC	Scaffold110675	Ensembl_Plants	DNA/TcMar-Stowaway	11627	11684	304	-	.	ID=151946	repeat_name=THALOS_AT	repeat_type=Type II Transposons	sequence=ACGGACTACATACGAATGTATATAGACATATATTAGAGTGTAGATTTACTCATTTTG
Scaffold110675	Ensembl_Plants	rRNA	11330	11670	.	-	.	ID=gene:ENSRNA049454415	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=AATGTATATAGACATATATTAGAGTGTAGATTTACTCATTTTGCGCTTCATTGAAAAGGCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACACCTCTATGTCAGAATCTAAGCTAGCATGCGACATTTGTGCCCGCCGCCCACCCTGTGCCCATGCCATTGGCTAAGACGGTCCGACCGACGTGTCGCGGCCGGCCGCCTCGAAGCTCCCTTCTCAACGGGCGGTGGGCTGAATACTTTGCAGACGACTTAAATATGTGACGGGGCATTGTAAATGGCAGAGTGGCCTTGCTATCATGATTCATTGAGATCCAGCCCCATATCACACGGATTC	Scaffold110675	Ensembl_Plants	LTR/Gypsy	11627	11686	394	-	.	ID=427451	repeat_name=RLG_Sabrina_3B_090_F24-1	repeat_type=LTRs	sequence=AAACGGACTACATACGAATGTATATAGACATATATTAGAGTGTAGATTTACTCATTTTG
Scaffold92513	Ensembl_Plants	rRNA	55146	55237	.	+	.	ID=gene:ENSRNA049453961	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCCATAGGTATGAAACCCATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold92513	Ensembl_Plants	LTR/Copia	55059	55422	3152	+	.	ID=2084454	repeat_name=trep3125	repeat_type=LTRs	sequence=ATAACTCCGCCTATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGATAAAGGAGGAGGGTTGTGATAGGCTTGGCGAGCCAACATAAAAACTAGCCAGTCCCATAGGTATGAAACCCATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCATCGTAAAAACTAGCCAGTCTTTTGGGTATGAAACTCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGAGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGATAAAATGCTTCGTAAAGTAAAGTAAA
Scaffold92513	Ensembl_Plants	rRNA	55276	55367	.	+	.	ID=gene:ENSRNA049453975	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCTTTTGGGTATGAAACTCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGAGAAGTCCTCGTGAAAGGGTTTC	Scaffold92513	Ensembl_Plants	LTR/Copia	55059	55422	3152	+	.	ID=2084454	repeat_name=trep3125	repeat_type=LTRs	sequence=ATAACTCCGCCTATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGATAAAGGAGGAGGGTTGTGATAGGCTTGGCGAGCCAACATAAAAACTAGCCAGTCCCATAGGTATGAAACCCATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCATCGTAAAAACTAGCCAGTCTTTTGGGTATGAAACTCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGAGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGATAAAATGCTTCGTAAAGTAAAGTAAA
Scaffold34530	Ensembl_Plants	rRNA	12661	12966	.	+	.	ID=gene:ENSRNA049453682	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GTGCAAGTAGAACCAATTTGAACTGTGAAACTGCGAATGGATCATTAAATCAGTTATAGTTTGTTTCATGGTACGTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATATGTGCAACAAGCCCCGACTTCTGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTGCTCGCTGATATGATGATTCATGATAACTCGACGGATGGCTATATTATTCAATTTAGTAAGATACGTCACAATTTTCAGTTTCATAACCATAAAAGGGACTACATTCAACGAAAGTGATTAGCTCAGGAT	Scaffold34530	Ensembl_Plants	LTR	12870	13617	3188	-	.	ID=1108209	repeat_name=LTR_HVVMRXALLrA0217D06_ipk26_c5_3917	repeat_type=LTRs	sequence=AAATAATACTACCCTCAAAGATTGTCGCAATCCCCTATACTTGTGGGTTATCAATGCCTTTTTCTGGCGCCGTTTCCAGGGAGCATAGCTCTATTTATTGAGTTCACTTGGGATTTTACATTATGAAGAATCTAAAAGGCGCTAAGACTAAGATTGTACCCTCTAAGACGAGGGGAGGTAAGGAGCTGCCATCTAGCTCCGCACTTGATTCACCTTCTGTTTTAAGTAGGCTTGCGACACCACCACCTACTATTCATTCTGATATGTCGCAAGTAATTGATGATACTACTTATGTTATAAATGAAACTTGTGATAATGCTAGAACTTTCCTTGATGATATTGTGCCAATAGGTGAATTTCTTGATGAACAAATTGCTAAAGCTAAAGAATTTGAGAATGCTAAAACTGATGAAAATTATGATTCACCTATTATGTCTAGCTCTCCTAGAGTTGAAATGCCTAAGATACCTGAGAGATATGTTATAGATGGGGAGACAGCTAGTGAAATTCTTGCTTGTAATGATAGAGATGATGTTAAGAAATTACTAGGCAAGCTGAAAGAAAAAGCTATGATAGAGAGAATGAAATATGATCCTAAGTTTGCTGATTCTCCTACATTTGTCACCGATGATGATTATGAATTCTCTGTCGATCCTGAGCTAATCACTTTCGTTGAATGTAGTCCCTTTTATGGTTATGAAACTGAAAATTGTGACGTATCTTACTAAATTGAATAATATAGCCATC
Scaffold8979	Ensembl_Plants	rRNA	11895	12011	.	+	.	ID=gene:ENSRNA049452850	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=ATTACTTTTGATATAGAGATCATTGAAACTCACTATAGTCCCATAGGTATGAGACTGATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTT	Scaffold8979	Ensembl_Plants	LTR/Gypsy	9286	11931	6743	-	.	ID=1719576	repeat_name=RLG_Laura_3B_098_L13-4	repeat_type=LTRs	sequence=TATAGTGAGTTTCAATGATCTCTATATCAAAAGTAATTCTTTTTGCCACTTAAGGGAATAATTCTATGAGTCATCTTCCCTAAGGTGCCCCGTTATGGGATCATGGCAATTAACTCCTCGCCACTATGGAACCCATCCACCATCTTATTAGGCATGGACTTGTTGCCTACCAATTTGAACCTTCGTCATCTGCCTTCCATCACCACTTGATGTGTGTTTGTGGCTCATCTCAAGAGATGATTCAACGTCTCATTTCGCGAGTTCATCATGAGTTGCTCGATCTTTGAGAAGATCAATTCATGTAGGGTACCTCGTTCCTTTTGTCGTCGTGTTCGATGAAGATCTCAAAAGCAATGGCGTCAAGATCAATTTGAAGCAATGAATCAACATCTTCGAGAAGGGCATCTGGATCGTGAAGATTGTGCTAGCTTTGTGTCCCCTCTGTCTTCTTACCTCACGTCTTGAATCTCGGGACGAGATTCTTGTTTAGTGGGGGCGAGTTGTCACATCCCTAGTCCTGGTATGCACTAGGCTAGCCCTTCATGTGTGCATCATGTTTAAATTTTCAAATGAACTTGAAACGGGGGATGTTCAAACCCTAGCATAAAAAGGAATCCACTAGGTTCAACTAAAATATTTTTCAGTGAACCCAAATGGCCTTCAAAAATGTTCATCATTTTTGGTAAATGCTGGAAACAGCAACAAGAGGTGATGCACATTTTTGCATGACATTTTGGATTGTTGAATTAACACATATTGTATTTATTGGAGCAAATAAATACTATAAATACTTTATTGCTCCAATAATTCTGATTTTTGTTGAGGGGCTATGGAATAATTCTTTTAGTCCCTGCAAAATTTATCAGAAGCAACAAAATTAGTTTGGTTCAAAAACCAAATTAAAACAAATGTTAGAAATAGAAAACAGAAACAAAATAGAGAAAAGGACAAACTTACCTGGCACTTACTTGTCCAGCTGGCCGGCCTGCTACTGTGCGGCCCAGCCCACAGCGCAGTGCCAGTAACCCTCATCCTCCCACCAGGAGGATGAGAGGCGCGTGGCCACCGCATGCAAGCACGCGCCCCGGCCACCTCCTACTTGCCGCCTCCCTCTGGACCTCCCGGACGACGCCACGCACGCCCCGTGCACAACGCTCTCCCCTCCTCGCAGCTCTCTCTCCCTCCCCTCTCTGCTCTCTTCCCGAGGGGAGCCCGTCGCCACCGCTCATCGCCTACGTAGCCACAGCCTCCCCCCCTCGATCTCTCTCCGTGCTCTGAAGGACCGCCACGGCCGCCTCTTCCTCCTCGAAGACCCACGCAAGCCCGGACGCCCTGTAGAGCGGCCTTCAACGCCGTCTTCTTCCTCGATGCCGTGGATCGCCGCCGTCGATTTCGCCGCGTACAGGACCTCCCCGAGCATTCTGAGCGTCTCTGCGAGATCAACGTGAGCCCCAGCATCATGTCCCACTGTTTTCCCTCTCGTTTTCGTCCTCGAGCCGTGGCCCCCTTCGACCGAGCGGCACCGTCCGCCATGGATGTCGGCCATGGCTCTGCCGTGCCTCTCCGCTTGAATTCCCGAGCTAGTTGTGCTCCCCGCACCTCCAGGAGGCCATAGAACTACTTGTCTTCCCCGCTAATTCACCGTAGCGCTGTTTTGCGACTTGCCCGAACTCCGACCGCCGGCCAAGTCGACGCCGCCGCCGCCCCTGGCCACCCCACGACCTCCCGCGTGTTCCACTGGATGCGCGCTGCCCCCAGCTAGCCGTAGGTCCAAACGGCGCTCGATCCCGTGGACTATAGTCGGGGGAGCAAACCCCCCCCGCGGGCGCGTGCGGGCCGCGGGGGGCTAACCACCGTTGTGGATGGCGTGGCACACTTAATTAGGGGCTAATCACCCCGCTAACTAAACCATGTTCAACTGACAATGGGCCCCATGCCCTAATTAACCCTGGGATTTATTCCTTGTTTAGTTTAAATTAAACCAGCCGGCCCCACATGTCAGTTGACCCTGCCACGTCAACGTTGACCTGGCCCTACTGGTCAGCCTCTGTTCTTGCCCTGTAACATTGACGTGTGGGCCCCACGGGTCAGGTTTGACCTGGACCGCCCTGTTGACCTGCTGACATCACCGTGACGCTTTGCTGACGCAGTAATGTTTTCTGGATTTTAAATAAATCCAAATTATTTATTTATCTCCAGGAAATAACCTAAACTTTGAAAAATATTAGAAAATCAACCATAGCTCAGAATGAAATAATTTATATATGAAAAATTATCAGAAAAATTCAATCTATCCATCTGTACTAGTTTCATGCATGACAAACCAACCTAAACCTGCTGTATAGATGAAAACACATAAAGGGCATTTAAAATGCTTAAGTTTGGAGTTACATTTGAATCCTTGGTTCAAATGAGCTCCATTGAACTTGTTGCTGTTTGCATTAGTACAAACAACATCACATATAGATGCCATGTTCATGCATCATATTGTGCATTGCATTGATTGTGTTTATTCTCTGTTTGCCGGTGTTGTTCCCCCTCGGTAGACGTTGTTCCGACGCTATGATCGTTGACACTGATGAAGACCCAATGCTATCTTCAAAAGTGCCAGGCAAGCAAAACCCCCTTGTTCATTCTGATACAAT
Scaffold56112	Ensembl_Plants	rRNA	20605	20727	.	+	.	ID=gene:ENSRNA049452797	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGAAGTAGTGTCAGGTGGCAAGGGAGAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCATTCC	Scaffold56112	Ensembl_Plants	DNA/En-Spm	19958	21805	6711	-	.	ID=726443	repeat_name=trep4187	repeat_type=Type II Transposons	sequence=ATTATACCTGTTAATGTGACATGCCTTCCTGTATTTACTTCATAGTACATATGTCTATTAAGCATGTCCTCACATAAAACTATTGTTTTTTTGTATCCCGCATAAATCAATATGACGAGACACCTTCAGTATATGCAGTGTGATATTAGTTGCATCTTTGATATGATTAATAGCATGCGTTGCTTCTAATTTGTTGAAATGCCATTTATGATGGGACGCTTTTAACTTGGCAGAGTCATATTGGTTGCATCTTTCACGTGGTGTCTAGCTTGCATTGCTTCTTATTTGGTGAAATGGTTTCTGCTTAGTTTAGACAAACAGTTGTGAATATGCCATGCCGTCCTGTTTTTCGTATTATTCCATCCTGGAATCATGTGTTTGCCTTACATCAAAGTAGTGATTGTCAGTATCATGCATGAATGAGTTCTGAAGAGTGAATTTTATTGCTTTTTCTTGTCGGTTTTACTTGACAATTCAAAATCAATAAAGCGGAAGGAAGTTAGCAAGGCAGCGGATGAAGGTGCTCCTTCCAAATGGAGGGCCTCTACATATTCTACTCCTCCATCCCCCCAAGATGATTTCCAAGACAACACATGCATAGACACTCAATGTAGTTGTGTTGGTGATGAGCACATCTCCCCTAGTGCACCATCACAGGTGCTCCCTCTGACTTGGCACTGTTATATGTGGTTGCATGTTATGTATGATGTCTAGCTTGTATTGCTTCTAATTTTGTTGAATTGCATCTGCTTACTTTACACATTATACTTGTGACTGAGACACGTGTTCCTGTTTCTAGAACACACAATATCTGTCTATCACACCATGTTCTTACATAAAAGTACATTTGTTCTGAAGAACTAAATTGTTATTCATTTTTCTTGTCGGTTGACTTAACATGGCACAGAGAAAGAGGAAGCAAGACAGAACGACAGGGAAAGGGAAGCGGAACAATCCTGCAGATTCTGCTGGTACTGATGGTGCAATAGAAGGTCAGAGTCCAGTGGAAAATTGTATAGACAGGGTATCCCATGCTACACGAGCTGCAGAACAAGCCAAACAGAAACAAATTAAAAAGGGAATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTTCGGAGTTCTGATGGGATCCGGTGCTTCTCCCTTGCCACCTGACACTACTTCCCAAGCACTCTTGACACAAGACGAGTTGGCAATATCAGATGAACCTTGTGAGCTTCAACAGCAAGAAGGTAGTTGCTGGAGTCAAGTTACAGTTGCATGCTTCTTTATATGTAGTGTCACAGTTTGATGTACACTAACACTTCCTATGTATGTTGTCTGACTAGCACCTAGGCGCAAGAGGAAACAAACATCAGGGATAATGCTCGATAGGTTAACTAAATCTAGAGGAGGAAGAATGGAGATCCGTTTTGAGGCAGGTTTACAGAGTCAACCAAGTTAGTATCAGAGGCAGCGGTTGCTGTTAGGTGTCATGTACGTATCCTCCCAACATGGATTCAGTACAGGAATGACAAAGACGAAACCCAGTTCAACACCTTCCTCGACCATTTATCTGTAAGTATGGTTATGTATGGAAACTAGTAATATCGTCTTGCTCTGTCCAATACTTTCTAGGTTGCTGATAATGAGACTCCCATAATTTTCAACAGATAAGGTTCAAGTTGGATAGCCAAGATGATGCAACCAGACAAGCTTGCACCCATGTTTTCAAGTCTGCTCTGCGATAGTATCGGTATAACTTGAGGAAAACTCACTTTGAAGGCAAGGCTAACAGTGAATTTGCCAAACATCTCCAGTGGAAAATATAT
Scaffold86443	Ensembl_Plants	rRNA	26472	26562	.	-	.	ID=gene:ENSRNA049452382	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GATGCTTCTATTACTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTAACCTCCTGGGAAGTCCTCGTGAAAGGGTTT	Scaffold86443	Ensembl_Plants	DNA/En-Spm	26543	27730	8358	-	.	ID=287669	repeat_name=DTC_Jorge_3B_040_D16-1	repeat_type=Type II Transposons	sequence=TTCCCCCCACCGTCCTCCCCGGCGGCCCCCCCCCTGCCCCTCCCCCCCCCCCCCCCAGCCGCGGCAGGCCGCCGAATCTAGTCCTCCGTCGCAGCGGTGGACCTCACACCCCGACGGATCTACCTTCCGCACCTTGGAACCCCTAACTGCCAGCTCACCACTTCACCGGAGCCGCTTCAGCGACTGGCTTGTACACCGCTCCAGATCTCCTTGACCGCCATCATGGTCCACCACACTGGATCTGCTTAACCGGCACCCTCATCCACCACAGTGTAGGCCCTTCACTGACTCCCTCGTCCGTCCCTTCGCTGGCCCTTCATACAAGCCCTCGTCCACCGCAACAGATCCGCCTCACCGAAAGCACTGTATAACGCGCCCGCCGAAGCCTTCGTCCACTGCACCGGACCCGCTCCATGGACGCCATATTCAACTCCACCGGCCCTGCTTTACCGACGCCACAATCTCATCAGGTTATTTCGATCTGTACTCCTTCGGTTTTTCTCCTTATCGTGCAAATGTTCACTTACCACAGATGAGCTTTCTTGTATGTCGACAGGCGCCGCAACCGTAGCACCGGAGCCTCTTCAGCGATGGTGCAGCCGGCCCAAACTCAACCGCTACACGAGCACCATCGACGATCCTTAGCTATCAAGTATGCCAACGATACCCATACGCCGCCGAGAATCAGGTACTATTATCCAACGGTTGGTGCCTACATTCACTTTCTTGGCATAAGCACCGCACCTTTGAATTTCTTCAGGGCATCATTCAGTTTTTCATGAGAGGCGTTATTCTGCTTGCACCTATAGGGCCATACTTCTGGCAGTGAACATGTTACATGTGCTAAATTACATACCAGTGCACATATAGTTAATATGCTTCAGTTTTGTCCTAAGTATTACTGTACTTCCTAGATATCACTGCCTAGTATTTTACTTCTTGCATGCTATATTTATGATAATGGTGTTGTTCTGATGCCACCTGTTGGTTCCATCAGACTGCTTCATGTTCTCTATGCTTAATTACACATCAGCAAACTAGCATGTGGTTCCGCTCATTTTTCGTTTTACCCTACATTTTTTGATGCTAGCTATTACATCACTGCTATGAGCCTCTGTTCATTACTTTTTTGTGTGTTCTTGATCTTCCCAAGTTGCATGACTAATTTGATGCTTCTATTACTTTTG
Scaffold47933	Ensembl_Plants	rRNA	40144	40523	.	+	.	ID=gene:ENSRNA049452237	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=AGAACCTATGGCTGAGGCATAGGGGATGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGAGCGTAATAGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCATTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACATGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTT	Scaffold47933	Ensembl_Plants	LTR/Gypsy	40118	40172	338	-	.	ID=1814587	repeat_name=LTR_HVVMRX83khA0189F10_v71_c1_1092	repeat_type=LTRs	sequence=CCATCCCCTATGCCTCAGCCATAGGTTCTATAAAGTATGCCATGCTGTGTACCA
Scaffold251367	Ensembl_Plants	rRNA	11450	11541	.	-	.	ID=gene:ENSRNA049452154	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=ACAACTAGCCAGTCTTTTGGGTATGAAACCCTTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAAGGTTTC	Scaffold251367	Ensembl_Plants	LTR	11536	12166	2889	-	.	ID=1134859	repeat_name=RLX_unnamedfam16_3B_059_I05-1	repeat_type=LTRs	sequence=CCCCGGGTGCCCGGCCTCCCGCCTCCAGCCTCCTGGCGCCACCCCGGGTGCCCGGGCTTGGAACCCCCGGGTGCCGGGCCAGAGCCCCCCGGGTGCCCGGGCCACCTACAGCCAGCCCCTGACCTATCCGGGTGCCCGGACCCCTTTGCACCGGGTGCCCGGACCACTCCGCGAGTGCCTGCGTGCAAGTTGGGGCTTTTGCCCTTGTAACCCTCTCCCCCTCTATTTCGAACCTAGACTATTTATACTCCTTACCTAGCTCATTTAGAGGACATCAAAGTATATGTGAGATATTGAGAGAGCTTTGCTCATCTTCCTCCCCTTGGAGATCATGTCCTCCTAAGGGAGAAGATCCTCTTGTGGATATCAAGACCCCATCTAGGGAAGGATCCCCATCATAGGATCATCAAGACCTCTCTCCTCATAGGATTGGGATGAACTAGTTACCTCTTGTATCTTCTTGTGTTGGATTTGGACCCTTGTATCTCTCTTTGTGTGATTGGATCTAGCATATGTGTGATTGGATCTAGTCAATTCGAGTGTTTCCCCTCTCTTGTGTTCTTCGTGTTCTTGGGGATTTCCCCTCCAATTCGTGAAAGATCTCCATCTAGGGTTCCACCCTACAACAAC
Scaffold251367	Ensembl_Plants	rRNA	11450	11541	.	-	.	ID=gene:ENSRNA049452154	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=ACAACTAGCCAGTCTTTTGGGTATGAAACCCTTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAAGGTTTC	Scaffold251367	Ensembl_Plants	LTR/Copia	11402	11542	1161	-	.	ID=2084465	repeat_name=trep3125	repeat_type=LTRs	sequence=AACAACTAGCCAGTCTTTTGGGTATGAAACCCTTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAAGGTTTCATATCTAGCCTACCCCAACTTGTTTGGATAACAGGCTTCATAAGTAA
Scaffold46624	Ensembl_Plants	rRNA	26685	26840	.	+	.	ID=gene:ENSRNA049451792	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=GACTCTCCGCAACAGATATCTCGGCTCTCACATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTTAATTGCAGAATCCCGCCAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTTGGGCGAGGGCACACCTGCGTGGACGTCA	Scaffold46624	Ensembl_Plants	MobileElement	26687	27519	3860	+	.	ID=2246147	repeat_name=TXX_Gr_DX403825.1_7641	repeat_type=Unknown	sequence=TCTCCGCAACAGATATCTCGGCTCTCACATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTTAATTGCAGAATCCCGCCAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTTGGGCGAGGGCACACCTGCGTGGACGTCACGCCAAAAAACGCTCCCAACCACCCTCATCGGGAACCGGATGCGGCATCTGGTCCCTCGTCTCACAAGGGGCGGTGGATCGAAGATCGGGCTGCCGGTGTACCGCGCCGGACACAACGCATGGTGGGCGTCCTCGCTTTATCAACGCAGTGCATCCGACGCGCAGCCGGCATTATGGCCTCAGAACGACCCAGCAAACGAAGTGCACGTCGCTTCGACCGCGATCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAACTTACAAGGATTGCCCTAGTAACGGCGAGCGAACCAGGAGCAGCCCAGCTTGAGAATCGGGCAGCTGTGTCGTCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCAAATCCCCTGGAAAGGAGCGCATGGGAGGGTGAGAGCCCTGTCCGGCCCAAATCCTGTCGCCCCACGAGGCGCCATCAATGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCCGTCCCAGGCTAAATACAGACGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTCAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCTGGGAGGGAAGCGGATGGGGGCCGGCGATGCACCCGGGCCGTATGCGGAAC
Scaffold57019	Ensembl_Plants	rRNA	26071	26189	.	-	.	ID=gene:ENSRNA049451555	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATATGACCATACCTGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGTTTGGGCGAGAGTAGTTCTAGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTTTGGTCG	Scaffold57019	Ensembl_Plants	LTR/Gypsy	23781	26071	44300	-	.	ID=1496862	repeat_name=trep4321	repeat_type=LTRs	sequence=GGCCTGAGGGCAGAGTTCACGCGGTGACCACGCATGTACACGATGCCAGCCTGCGTGTCGACGCGCTCTGAGTGCCGCCGAGCGCTCTGTTTCGCGCGTGCTCGCTCCCCTGACTGCCAAAGCGCGCCAAACTTCGCCACCATCTTCGTCTCAACCCCCCTAACTCCCCCTGGCACTCGCCGACGCCGGAGCTCGCCGCAGCGAGCACGGGCACGGTCCGGCCAACGCCACAGTGCGCTCTGCACTGTGCTCGTCGCCTTCTTCTTGATCTTGTGCTCGTCCCCGTTCGCCCACAGTCCCCGCGTGAGTTGCGTCGCCTTCTCCCCCTCTCACTGACTCCGCTCGTCGCCGGGCGCAGTGTCCAGGTGTCGCCGGGGGAGCCCGATCCACCCCTCGGTGCTCTCCTATAAAAGGAGCCCCCCCAGCCTCCTCGAGCACCATCCTCCACTCCCACACACTCCACAAGCTGGCGGCTGGCGGGGGCGCGGCCGGGGGGGCCGCGGGCCGCTGTCCCCGAGCTCGAGCTCGCCGGTGATCTCCTCGGGTCGCCGCGGTAGCTCCAGCCCCTCCCTCGCCTGGGAGACCCTTGCAGACCCTCCACCACTCTTCGGTGAAGCCGTTCCGTCCACTTGGAGCCCCTAGAGTTGCCTCTGCTCGCAGTCGTCTTCATCTCCGGCGACCACTGCTCTCTGCCTCCGCTTGCGAGGTCGATTCCGACGCCGTCCGACCACCCCTAGCTACGCTACGGGTATGGGCAGGTGCGCCTCCATCCCCTCTCTCGATCCCTCCCTCTCGGTTTGTCCAAGGAGCCCTCGCCGCCGGCGTGAGCTCCGGCGAAGCCATGACCCCCTCTGTTTCCTCCTCCCTCTCCCCCTCGCCTGACTAGCGGGGCCCGCTAGTGAGCCACTCAGTACGCGCGCGAAGCGGTACGAGTGGTGGCGCCCCGAGGCTTTACGCCTTCGACGTCACCCCCCTAGTTTGTTTATTTAAATTCAAAAATATATATATATTTTCTAGAGAGCTTCAAACGGCTATAACTCTTTAACCATAAGTCCAAATGAATTGATTCTTTTTTCATTGTGTTCTTTGCAAAGAAATCTAGCAGCTCACCAAAGATGAGATTTTTCTGTGCTGTCTAGATTTTCTGGTGATTTTCAGAAGGGTTCTTGATATTTTCTTCTTATGTTTAAAATTATTTTCAGAGGGTGAGGCTTGTCTTGAGGATCACCAGAAGGCTTGTGAACCTCATCTGCACTAAGGCAAGACACGGGGGGATTTTCATGGTGCCATTTCAATGTTTATGATTTTCTTACTTGAATGAAAGATTTAATCCATGCATTTAAATAATTATTATGTTATTTATATTCTGTTAAGTGTTTGTTTTAGTTAATATGCTTTATTTACAGAATGTTTGAAACTAACTTATTTGGTAAAGAAACTAGTATTCATTTGTGGTGATAAAAGAATAATATTTTTATGCATATGAGTAATTACTTGAAGTTATTTTCTTGCATGAGCAAAATAATAAAAATTTGCTAGGATATATTCTGTTTAAAATGAGGTTTATCCTAACTAGAAAAGTGGCATGAGTTGTTGATGTTTCTGCTTAGTGTGAATATAGTTGACTCGGTCATTTCCGTTAATATGTGATGCATATGTAGTGTTGCATTTTCATGGCATGTGATGACACCGGTCATTTTTACTTTAAGTTGAACCTGAATATAACTCAACTTGAACATATCGTTGGCCGGGTCATGGTGCCACTGAATCGAGTTCTTCCCAGTGCAACCACATTTGCCTTTATGGGAAGGCCTTGATTCTGTCCGTTGTCATGCCTCTGGTCGGTGCCTCCAACTAGGGAAGGTTATGGGCGTGCTTACCTGGCCCGGTAAGCAGACATAACCTTGTGTGCCCGTTGTTGAGATTATGGTACCGGGTCCCCTTGTGGGATCATTTTGGCCACCACGGTGGTCGTTGTGTCTTTGGTAGACACGAGGCCACCCAGGACTAGCCCGATGGGGAGTGAGTCGGAGTGGCCGGGAGAGTGTCATGGCAATGGAGGGGTTTCGTCGGAATGCCATTGGTCCACCCGAATGGGAGTGCGAGGCCATGGGTTCCGTGGTGTGGGTACAGTGTGCTACCTCTACAGAGTGTAATAATCTATTGATAGCCGAGTCCATGGTTATGGACACGCTCGTAGTAGTTCACACCATGGGTCAATGTTTAATAAATTTTGCACACTAAGTTATGAACTTTGCACTATTGATGATGGTGGGAAAGCCATCGAGAT
Scaffold120533	Ensembl_Plants	rRNA	10759	10888	.	+	.	ID=gene:ENSRNA049451471	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=GACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGACACATTTTGATGGGATCCGAAATATTTTTATCCCGAAATTTCTAATCAGATTAAATACAA	Scaffold120533	Ensembl_Plants	DNA/En-Spm	10829	12256	8994	+	.	ID=1920802	repeat_name=DTC_Jorge_3B_015_P16-2	repeat_type=Type II Transposons	sequence=ACATTTTGATGGGATCCGAAATATTTTTATCCCGAAATTTCTAATCAGATTAAATACAATTTCAATATAAATTTATATTACATAAAAATCCAACGAAACATTGCGCACGCAACAATTAATGAAATTAAAATTTTCAATATCCAAAAATAATATTTTATAAAGTAATTACGTGTTTGGTGCTATTTTTTATAGTTACTACCCAGTTTTTATAATTACATCCCATTTATTATTTCTTAAAGCCCATTTTCTTGTTAAGCCTAATGCATCCTTCCTAGGAAAGATTTGCAGCCCAGCGAGGCGGAAAATAACAACTTGACCTTGCCTGGGTATTCCTAAAAAAAGTATAGTTGGGCTAGCCATTTTCAGCTTGAAAAAAATTAATATCTGGGCTGGATATCTGGCCTGGGCTAGACGGGCTAAAACCCGCCGAGTTAATAGCTGCAGCGATGTTTTCGTTGTTGTTCAGAGGAGAAAAATGAATATCTCGGCTAAACATCGCTCAAGAAAAACTCTGCAGTGCTCACACCTCAAAAACACAAATACCGCTCGAGCTGCTTGGTCCCAGCTGTCGGCCTCTTCTTGTGCAATTCTCTCATTTATTGACTACATAGGTTCACAATGGTGTGGGACCGTGATGTTAGGAAACAAGGAGGAAGCCAAAAAAAATTAGTTTTATATACTAATAAGGACGCAGTTGCTATCATCCTCTCCAAGTAAAGTTATCTCCTCATCCTCATGTCCGTTGACCATGTTGACAACGCGAGACGGCGCCGCCACGGCGAGCGCAACAACTCGAAGGACGACGGAGAGGGCCTCGCGGGCCCTACGGATGGTCTGATACAGCGCCCGCTGCTCATTCGGGAAGCCAGGATCATAGGGCCACATGTCCGTGACGGCATTGTCGTTCGCTTGTTCACCGGTGCTCGTTGAGGAGACGGAGGTTGCAGCACAGGTCCTCCTGCGCTGGTAGCTCTTCCGCCATTAGGGCGTCGAAGTGCAGCCACACATGCTCTATGGTGAACACGGCATGATCCGGCGTGGACATTGGCGCCGGCTCCTGGTCGGAAGCTACGTCCATCGCCTGATTGTCGTCGCTCAGCTCGGCGAGGTAGCTGGCGAGCCAGCATGTCCGGGGTCTGGACCGACCCTCTGCCAAGCACGAGTCTGACTGTCCTGGCCCACCCAGACCGCCTCCCTCGCCCGCGCGCGCTTTCTGCCCGAAACGGTCAGCACCACCCGCCCCGCTTCCCGGTGCATGCGATTGCTCCGCCTTCAAATGACACAAGTGCCGTCCGTCCATCCTTCTGCCGCCCACATTAATGATACGCGGTTGCCGAGGTGGCTACTCCGGCGCCACACGTCCGTCCCTCCGCCGCCCACCATTGCTATATAAACTGTTGCGCCGGCCATAGCCGCAGGCATCCGCC
Scaffold41454	Ensembl_Plants	rRNA	7200	7481	.	+	.	ID=gene:ENSRNA049451354	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=ACAGGCATAGTCAACGGCGCGGCAGAGACATTCGTGTGCAAGGGCACCGGCACGGGCACGCGCAGGCGCCTGCGCTGGCAGGTAATTTATTAGATAAAAGGCTGACGCGGGCTCTGCTCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACGGCCTTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAACGGGAGCGGGGACAGGCGCGGCGTCTTCCCG	Scaffold41454	Ensembl_Plants	DNA/En-Spm	4253	9208	30908	-	.	ID=720420	repeat_name=DTC_Jorge_3B_034_E06-2	repeat_type=Type II Transposons	sequence=TCTTTTTAGAGGCTTCAAATGGACTGGCACATACGGATGTATATAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTCTGTATGTAGTCGCTTGTTGAAATCTCTAAAAGACTAATATTTAGGAACAGAAGGAGTATTTTTGAATTCGTGTCATACATGCATGGTTTGGAAAAATAGATGCACTATACTTATTGGATTGTTGCTGTGTTCGTGTGTGGGTGTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGGTCATATGCTTGATACATACAAAGTTTTCTCACCTCCTGCATTGAAAAACTTAGCAGGGATACCATGAAATGTGAAATCCACGTTGAGATCACTATATCACAAACTCAGTCTAATTCAACAACTCGTCATAAATCAATTACCACATTGAGATTAGTATTTGCAAGGAAAATACGGGCATTGTAATACACATAGATTTGTTTGGCACCTTAACAGGTTCCTTTCATATTCTCGAATGGTAGGACCCAATGGCCTACCAGCTAGACCTTGGCTCGTGTTGATCCTAAAAAAATAAAAAAGCCGGGCTCGTGTCCTTCTGGTGGCGTGCGTGGTACGCACATAGGCAACCCCAACCAGTCGAGCCTCCGCGTTTCGAGTCAAAAATTTTGGTGGCCAGAATTCCAGCCCTAGGAAATTCCCCTCATGTCCCCGGTCCATAATGACTACCGATGAACAACGGAGGGATGCTTTAGTAACTAGACAACGTTGTGTTCAAAAAAAGTAACTAGACAACGTTACCTACCTTGCCGAGCACGGTTCAATTCCCTCGGTCGCCGCTCGCCAAGGTCACCTGTCAACTGCATTGCCTAGTACTACTACTACACCAGGATGAGCACATAATTGAGCCTGTTTGTTCGTGCCTAGTACTTGAGTTAATATATCAGGCAATGCATTGGTACGGAGGGGTTATCCTTTTGCTCTGCATATATAACTTGTCTGAAGTCTAACTAAGCAAAATGTTTGACCAAATCCTTTCTTAAGAAATACAACAGGACAGATGTATGGCTTGAAAATTTATTGCATGATGCAGGTTATGATATTGTTTCGAATCCTGGATCTTAAATTTTAGAAAATCCAAAAGTGACCATAAATTCTTGAAACTGAGCATGCTCACGTGATATGGCACTAATATTACTTCGTAATTTTTTTCTTCAATTTGAGACAAGCTGCTTATGACAAGTTGCACAAATGAAGAGCCAAGGTATTTTGGAACAAAGACCTGTCACGTTAAGGCGAACGCTTTCACTATTGAAACCGTGGGCGTTTACGTGCCGCCACGAGTCCCGCTTCTCATCGGCAGGTGCCGTCCGAGCAAGCACGTGAGTTGACGGGGTTTTTTTTGCGAGCAGACCGCTGCGCCGGCTGACAGGGAGGCGTGCGAGCAGACCGCTGTGCAGGCTCACCGGGAGGCGAGCCCTTTGACCAGGCTCCGCCGCCCACCTTCGTCCCAACTGCTCCCACTTTTAATGTCGTTGGCGCCGCAGTTTAAAATCAACCCCGCACTGCCCGGTATCACTACAATCTTCTCTCTTCCTCTCCGATTCTCCTGTCGTCTACCTCCAAACAACCTGACCTAAACGTATGCCATGCTGCATCACGATGGCTTTCCCTTAGTCTTCAAGTTTCCTGAGGAAGACACCCAGCCGGAGTCTCAAGAACATAAGGCGGTTTGGGACAAGCTTGAACTGGCCTTGCGGGAAGACGCCGCGCCTGTCCCCGCTCCCGTTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCGGATCAGCGAGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATTACCTGCCAGCGCAGGCGCCTGCGCGTGCCCGTGCCGGTGCCCTTGCACACGAATGTCTCTGCCGCGCCGTTGACTATGCCTGTCCCCGCGCGAGTGCCAGTGCCCCCTCAGCGGCATGGATGGCCGCCGTCGCCCGCTTCCTTGCACCAACGCCAGTCGCCTCCTCCCGCCAGTTGACTCGCTCCTGGAAACCGAAGTCCAGAACATTGTGGCCTTCCTTGAAGATAGGGCCAACATCCAGGAGTACACCAACAACGGCGCAAGACGCCGCCGTCGTCGTGGGTCAGTGGCCCGACGACACACAGAGCACGGCAGAGGAGCCGCTTCCCATCGCAAGACGCCCCCGCCGCCGCCGCGTAATCTAAATTTGCCATGAAAAATGTTCGGATTGACATGCTTAAAATCCGAACGTTTATCATTTCCGTTTATTTTATATCGATCGTCGTATAATTTAAAGTTGGAGTCAGACTGAACGAAATCTATGGTTTGATCGATTGAATGTTCTTCTAGAGCCGTATCAAATTAAATATAAAATGTCATCAAGCCACATGTATTCCTTGTCATCCAACGACCTAGACTGCTTCAATGTCGAGCGCTCAACACGTTTAGCGTGCAGTTAATTTTATGCCAAAAATAGTGTTAATCACATAATAACACGCAAATAATATCCAACTTAATATCCGCATGCACTTAATATACCTCCAAATTAATGTGCATTGCACGTACACACTGACTAGAGCTGCTAGCACGTGAAACTGGTGCTGTAACTTATGAATGCGTCCAGATATGGTCAACGGCAACATCGCCCGCGAGTTCTTCGTGTTTGCCCGTGCATCTAAACGCAGAAGGGGAGGAGAGAGAGAGAGCACACATGGAACCCACCAGTAAGTGAAGGCGTATAGTACTAAAAATAATATTACATGTTATCAATTAAATAGGCTGTGGTAATATAAAAACATTATGTGAACAAAGGGAGGTACAACAACCATTGATGTTCTACGTATGTTGCCTATTAACGTGCAGCTTGAAGGCCCTGGTCGCATATTTGATCCTCGTCCTTTATTTTTTAATTTGTATATGGGTCCAAATTTGTTTCATGACATGTGGGCCCCTCGGTGTGTAGTTTGTAGCACTTTAATTTGTGGGTCGAAATTTGTTCCATTCCAAGTGGACTATCGGTGTGTAGTTTTGTAGCTTATTTATAATAATTAAAGAGAACAACATAGTTTTTTCAATAATACCATGGTGCGATGTTGAAGGCGAGAAAGGACGTGCGAGAGAGCGATGACCGAGCCAGAGGGAAATCAACTAGGGGAGTTGCGGGGGTTGCAACGGTGTTTCGAGTAGTTGTGGGCCGAATGCTACGAAAGTATAATCTAAACCGACCGGAATAAATGCCTACACAAATTAATCCAAGGTTGGAGTTCCCCTCGCAATGTCAATAGCTCCGGCTTTGCGAGGGATGGAGAGGTAGCTTCAATGTGTGGAAGATACAGCGTGAGACAGTGAGGTCAATCGAGAGACATATAGATAGAGAGACAAAGTGAGTGTGGTCCGACATTCATGGAACAAATATATAAGCTCTGGAGAGATATTCTGTGATTGAGCTTTTGGCAAGGGTGAGGGCTGTAAGATAGAGCTTGAGAGATGATCAGTCACAGACGTGTAGATATATTTTGTGCGTGGGAGGAAGCAAGGTCGATCGATCAGATAGGATCGTCGTGCGATCGAAAGAGTGAGACGGGTTGGAGAGAGTGACCTAGATAGACAATGTGCGTGAGAGAGTATACAATGTGAATAAGTCGAATTGGGATCAAACATGGTGATATATCGTTTTTGTCCAAGAAAGAGCGAGGTCAATCGAGACATACAAAGAGAGAGAGAGAGAGCGAGTGTGGCCCGTGATGAGGTCGAAAGAGTGGGGGCGGCTTCGATGGACTGACCTAGATAGACAATCTGTGTGAGAGAGTATAGAGTGTGTCGATCGAGGCCCGAACAGGGAGATATATCATTTGTGTGTGAAAGAAAACAAGGTTAGATGAGACTCAGATAAAGAGAGCGAGATTGAGCGAGTGTGGCCCGCCGTGCGGAAGAAAGAGTGAGACAGACTCGAGGGAGTGACCTAGAAAGACAACGTGCGTGCATGCGCACGAGAGGTTGGGGGCTAGATAGGCAATGCATGTATTTAGCGCGAGAGGGTGAGAGCGAGAGGGAGAGAGAGAGAGCTCGGCATGGGGTGCAATGGCGGGTGTGTGAGGGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGTGTGTGCGGAGGGGGGGGGCTAAAAACAACATTTGAATGTAGATAGTACGAGACTTAATATCGATGTTTCAATTCGGTGTACATTGTAAGATTTGAACTGGGGACCATGCATATGGGTAATTATTTTGAATTCGTGCCATACTAGGTTTCGAAAAGTTGACATTCACTCGATTTGTTGTGCTATTTTGTAGGTCATATGTTTGAATCCATCCAAAAGTTTTCTCACTACCATGGTGTTCATCATATACATATGAAATTGTACTAAAAAAGTAGCATGGATACAGTGAAATGCGAAATCCACGTTAGAATTGGAGATCGCTATGTGACAGACACTCTAATTCAAATAACTAATTGTGTGACACTCACTCTAATCCACGTTAGCGTGGCTACCGTTTTGATTTTTTTCAAATAGCTCCTCATTAATTAATTTATAGTATCTCGTTTCGAATGACTAATTATTGCAAGGAAAACATGGGCAAGGTAGTACAAACAGATTCGTTTGCAAATGAAAGAAGATTCGTTTGCATTCTCAAATATAGGCGCACCAGGGTCACCAGGGTCGTGTCAGGGTGGACGCTGCTTCGGTACCTTAAAGGCAACTGCCTTTTGGTCCCTGACATGTG
Scaffold51534	Ensembl_Plants	rRNA	15191	15313	.	+	.	ID=gene:ENSRNA049451075	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCTGGAGTAGTGTGAGGATGGGTGACCTTCCGGGAAGTTTGACCACTTAGTGCGATTT	Scaffold51534	Ensembl_Plants	DNA/En-Spm	15230	15505	1036	+	.	ID=405860	repeat_name=DTC_unnamedfam55_3B_059_I05-1	repeat_type=Type II Transposons	sequence=GAACTCCGAAGTTAAGCGTGCTTGGGCTGGAGTAGTGTGAGGATGGGTGACCTTCCGGGAAGTTTGACCACTTAGTGCGATTTTACTTGAGATTAAGCATATTGACCTGAGATTAAGCCATAGTGACCCGGGATTAAGAAGAAAACGAAAAAAAATTGAAAAAAAATTTTGAAATTTTTTTGAAAAAAATATTTCTGAAAAAAATTGAAAACAAAATTGTTACTAATGGCACACTTCTATGTGGTGCGCCATTACTAAGTCAGATAGTAATGGCG
Scaffold65012	Ensembl_Plants	rRNA	14195	14312	.	+	.	ID=gene:ENSRNA049450143	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCC	Scaffold65012	Ensembl_Plants	DNA/En-Spm	13811	14195	3167	+	.	ID=832295	repeat_name=DTC_Jorge_3B_035_F06-1	repeat_type=Type II Transposons	sequence=AAACAAGCATGCACTCATGTTTTTCAGTCTGCTCTGCGACAGTATCGGTACCACCTTAGAAAATCTCACTTTGAAGGCAATGCTAACAATGAAATCGCCCAAACATCTCCAGTTGAATATATTACAGATGAAGACTGGACAACCCTTGTTAAACATTGGTCTGATCCAAAGTATCAGGTAGGGTATATGTATTTGATCAGACCACATATTGAACTTGTATTTATGTATGTGCCTTACAAGTGTATCTTCTTCTAGGCTAACTGTTTGAAGAACAAGACCAACCGTTCTAAAGTGAAATTGCAACAGACAACAGGATCTCATAGCTATATTGCACACTGTGAGGCTCTTGTAAATAGCTGCTAGTTCCTTCTTTTTTCTGTGCCA
Scaffold139763	Ensembl_Plants	rRNA	14716	14800	.	+	.	ID=gene:ENSRNA049450040	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AGCCCGTCCCATAGGTATGTAACCCCTTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTT	Scaffold139763	Ensembl_Plants	LTR/Copia	14626	14851	1574	+	.	ID=2084460	repeat_name=trep3125	repeat_type=LTRs	sequence=ACTCCGCCTATGTCTTCTAGGCATAGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCCGTCCCATAGGTATGTAACCCCTTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTCGGATAAAAGGCTTCGTAAGTAAGT
Scaffold34742	Ensembl_Plants	rRNA	44437	44577	.	-	.	ID=gene:ENSRNA049449896	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=GACCCGAACCTGGGTGATCTATCGATGACTAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCAAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTTG	Scaffold34742	Ensembl_Plants	LTR/Gypsy	42817	44441	7266	+	.	ID=1653499	repeat_name=RLG_unnamedfam85_3B_058_I14-1	repeat_type=LTRs	sequence=ACGAACACACCTCGCCAAAGCCTTGGTGTCCTAGCCTTTGGCGTCTTAATCCTCGCGTGATGCTCTTAAACGAGCTAACGGGCACGTGCGCCCACCGTAGTCTGTGCCTCCGGGCATTGCGATGCGGCGTGCCAGCGACGACCGGCCCACGCTCGGGGGCTCGCGTGAGGTATGGAGTCTCCGGAGGTCCCCTAACCCCGTAGTCGTAGGGTGCCTCCCGAGGCTTGAGGACTTCCGAATCCACAAGAAAGAAAACTCTAGAGGACCTCTCCGGAATGAGGGGCATGCAGAAAGTCCAAGCTCTAAAGAAGCTCGCTCTCACGGCACGAGAGTCTACCGCAAGCACACTAAGCTAAGTCATCCCAATCACAATCAGCGGCAACACGGATATCAGGATGCAATATAAGAACGATAACATAAGGGCGCAAGCGCCATGGTCCATTACACACCCCGACAGGGCTTTCCACTTTTATGATGCAGAAAATAAGAGAGAAGCAAAAGCAGTCGCGCGACTACAGCGGCTCCTGAGACCCGGCTCTAGCACCACCCGCGCTTAGTCGGAGTCCTCCTCCTGCTTCACTGGGGCGCGGCGGCGAGGCGGCTTGTCACCCTCCCTGGTCCGAGCTCGGCAGCGTGGTGGCTTGCCGTAGTCGTCGTCGCTCGTGCTCCCCCCAGAAGAGGAGCCGCCACCGCTGGAGGCGCCGCGATCGTCGCCAAGGGCAAGCTCACCGCTGGATATGATGTCGCCCCTCCCGCCATGGCCATCAGGAGGGTGCACGTCGTCGTCGTTGTTGTCGCTGTTCGGGCAGCACCCCAGGCACCTACCATCTTCATCGAAGACCCGGGCGTAGAGGGTCGCCGCGCCGTCATACCTGAAGTGGAGGGTACAGCTCCCCTGCAGGCCGCGTGCGCGGGCGAATGGCTGCCACCCGCGGTTCAGGAACACATTGCCGGCGAGAGTGACCTCGACATCCACCCACGAGGCCCTACTGCAACAGCCATCGGCCTGCAGCCAGAGGCCACCAGCCCCCACCCCTCCCCCGGCCGGCAGTGCGCCCGCAAAGAAGCGCGGGAGCTGGAACCAGACACCTGCGAGCCTCTCCGCCCACACCACGAACTCCAAAGACGCGTCAGCCGAATGGGATCGTGGGCATGGTGGCCGAACGGTTGTCGCGTGCTTTCCCCCTCTGCTGTGGCTGCCCCGGCCGTGGCAACTTCCACCGTCGGAAGGAGCACCCCCACGACTGTCGAAGGCGGCACCAGCCTTCGAGGGGGTGCGCCCATGCCCTCGGGGAGCCACCGCTGGCGTAGCGGCGTACATACGGGGTCGGCCGCGACCTCTCTTGGGCGACGGCGAGCCCGGTCCTTCCTTGGGGGCCTTTCCCTTCTCCGCGGCGAAGAATCTCCTCACTGGCGCCATGGATGCTCTGGCAAGATGGTGGGACGAGAAGATGAAGATGGGTTGGGGGCTCTGCCCCTCTCCCATTTATAGTCAGAGGAAGTCTAACCGCTGGCCACTCACGTCCCGGGCAATGATGGCCTTTTTGCATGCACCAAGCAGTTGTCAGGTCGAGCAGTTGCCGAGGTGGCATGGGGAAGCGGAGATGCCCACGTCCCATCAAGC
Scaffold31837	Ensembl_Plants	rRNA	6400	6900	.	+	.	ID=gene:ENSRNA049449528	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AACCACAATTTTTGATGAGGTCTCATTAATTACACTTTTCTTACATCTTCAATTGTAACATAGCATATAATCTTTACAAAAGATTCATTTAGTGAAAACATAACTCGTCTCACCATAAGGTGCGAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGGCCGGGAGGTCTTCTTAGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACCCGGAGAAAGAGCAAGAAAACGGATGCGCTAACGCGCAACGGCATACATAATTGGAGTTGACTTAATAACATATAAAATCACGT	Scaffold31837	Ensembl_Plants	LTR	3861	6524	11345	-	.	ID=2187006	repeat_name=LTR_AC200788.1_27	repeat_type=LTRs	sequence=TCGCACCTTATGGTGAGACGAGTTATGTTTTCACTAAATGAATCTTTTGTAAAGATTATATGCTATGTTACAATTGAAGATGTAAGAAAAGTGTAATTAATGAGACCTCATCAAAAATTGTGGTTTTAGACCACATTTCGAGGGGGAGAATGGAAGTCTCCTTTAGTATCAGATATCGCGTTCACTTCTCCTACTTAGATCATAGCATGTACTAAGCAAACTATGTATCTCAATTCTCTAATTAAGATGGAACCAACGAGAAGTCTTGGTTGGAGAATGTATGAAAAGCACATTCTAATGTTGGTTCTCTAATTAAGATGCAACAAGTCTTATTTAGAAAAATGACTCCTTTATCATGTTAGTGTGTACTTAGTCCCTTATGAGCATTACGAAGCACACATGAATGCTAAAGTGGCAAGCTTGCTAGTCTAATGACCATCATGATGTAACATGTTGATTATATATGACCAACGTCGTTTATAATCATATGTGACACTTCACTCAAGTGGCAAGTTTGTCAGTATCATGTTGTTTGTGGTTATATTTCTGACTAACGTCGTTTATAATCATTTTTCACAATTCATTAAGTTCTTTTCCATCTTCAGCCCAACGGTGTTGTGGTTTAGAGCTGGGATGATTGTTATCAAGATTTTTGGATATATTTTCCATCTTCTAAATAAAGTGATCATTAGGGGACCTGGAGCGTATGAACATTAATCTTAAGGATAACTCCATTAGATCTTTGTTCATATGCATCAGGTAAATTGAGGGGAATTTATTTTTCTCTCATGCAACACTTATTGTTGAGACTCAACAATTTCCCTATGATCGATAATGTGTGTGAATGATCATCTTAGTGGCTTGTTGCCATATAGGATGAAGATTATGAGCTCTAATGATGCATGGAACTCCATAGAATTTCCTCAGTGAGTTGTTGTGACGTTTGTGTTATTACTATGACATGCTCTTGTGTTGACTTAGTTGATAATGTATGTATGACTCAACTGTATGGTTTTGTCATGGGTGAAGTTGACATAAGGAATGTTATCTAAAGAAATACAATTATGAGATAATACAAGCGTTGGGACACTCATACTATAAGACGAGGGGGAGTAAGATCACTACCTTATGGAGATAGAATATTTTGGCGAGCCAAGTAATTTCTATTTTCTATTTGTAACATGAAGGATCTTGGTGATGCCCATACTTTGCTTGTATTGAGTTTCGCCAAGATATATGTCAGAAAGGAGTATAAGTTTTATTACGATGACATACGTTGATAGAGTACAAAAGAAAATATTACGTGGTAGTACTCTATCACACCTGCTACTAAAGTCAAGGGCAATAAGGGTGGACAATTTAGTGTCCAAGGAACCATTATGAACTGATCAGATAATGTTAGTTCCTTATGCTTCAGCTGTCAGAAGCAATGTTAGTATTCAAGTATGAAAGTGCCCTAATTATGATCAGGATAATTGGCAAATGTACATCAAGGCAATAAAGTTTACATGCTCACTAATAAGAAGTCTGGTAACCTCAATAACGTAGGTTATTCAGACATTGTTTTTGCGAGGTGTGTGGATTTTGAGTTTCCACGTTATGTTACATCCCCACCCTCACATATGGAGCTATATCGTGGAAAAGCTCCATAATGACACTGATGGCATCAGTAATGATGCATTTTATTATTTGGTGTGTTAGAGACTACTGAGAAGGTTGTATGTCAAATGAGTTTATTCCCGAAATTATGGTGGTAGACAGCATTTCTGAACCACCTACTGCAATATGAACATGCAGTTTTCTATGCGAGTAACAACATGTCAAATGGCATTGCCAAAACCATTGACAATATGTTTCTTGTTGTGAAAGATAGAATCCAGGATCAAGCTATTGAAGTTGAGCGTATGAGTACGTCTAAATGTTTTACGGATCCGTTTATCAAAGACTTACCACCCAATTGAATGATTATGTTGCTAGCATGGGTTGCTGGAAAGTCTTGTTGATCCTGGAAATAAGGACCGTTGAATAATCCAACTCCCATAAAGTATTATGATTTTCATTTCGAGATAGAATGATATACTATAAGTACTGAGGTCCAATGTCATTTGATAGGTCACTGTGACACCTTACTTTGGTATGTTATTTCTGTTACGAGTGGGTTTATGATGTTTGTTAACCTTACGATCAAGGGGGAGAATGTTGGAATTTGATCTCAGGTAACAACCCGAGAGAATCCAGGAGGTTTTTGACCCCATACCTTTCACGTAGGAGCCTTGATCGGAGGCCTCTAAACCAACAGTTTTGGACCCGGTCCCCGGCCCCAGCACTTGATATAAAACAAAAAAAACGATAGCACGTATAAGACACCAACAAAAGAGTGGCTATCGATAAAACTGCCCGATCCTAAAATTGTGCTAAGGGGCTGGAAGACCGATGTCTACCGGCGGCCACCAGGAGAGGAGCGTGCCGGCATCCATGGGCTTCCTCTTCGACTACAGAGCCCCTGCGTCCCTGCTGCGATCTCCTCCGAAGGACTCCACATCGCTGGAGACTCACGGCTGCCAACGAGGGCTACCCATTAATGATTTCTGCAAGTCAAGGTTAGTCCCTAATTTTCTGCATAGGAGGTGTTCTAATCTAGAGATCGTGATCCTATTATGTTA
Scaffold31837	Ensembl_Plants	rRNA	6400	6900	.	+	.	ID=gene:ENSRNA049449528	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=AACCACAATTTTTGATGAGGTCTCATTAATTACACTTTTCTTACATCTTCAATTGTAACATAGCATATAATCTTTACAAAAGATTCATTTAGTGAAAACATAACTCGTCTCACCATAAGGTGCGAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGGCCGGGAGGTCTTCTTAGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACCCGGAGAAAGAGCAAGAAAACGGATGCGCTAACGCGCAACGGCATACATAATTGGAGTTGACTTAATAACATATAAAATCACGT	Scaffold31837	Ensembl_Plants	LTR	6861	8184	3304	-	.	ID=2187007	repeat_name=LTR_AC200788.1_27	repeat_type=LTRs	sequence=TCACTTGTTGAGGTTTCTGAATATTTTATTTGGAAATTTTAGTTAAGTGTGAATTTCATGTTGATGCCACCCTTATGGCATTTCTTAATGATGTCATCAGTACTACCGGGCTGAGGCCACCACACGAAAAAAATGTTAATGCTCACTTGATGCGGTTTACCACGTTGCACTATGTGTCATCATAATGTTGGGGCAATATGCCTCTTGGGCAAAACTAAAGTTTATGGTTGGTGAATTTTACGTCATTTTATTATGATATGCACCGCTGAAATAATCATAATGATTAAAGATGATGTTAATGAATTATAATCACAATTCCTTTGCAAAGGAATTTGTGGAGTGAATTATTCCAAATTACATGTTGTCATTTGTTTGACACATGGTGTATACCTAATATTATTTGGTGAATTCTTATGTAATTTTGTGCCCAAATTTTATTATTTGGAAAATGTTATGATATCCCGATGATAATATTAATGTCATTTTCACTGAGAATGTCAATTTTAATGTTTAGTCAGTGGCAGTGACATTTATATGTTGTTGTTAGGTCTAATGTCATTTCCATTATATGTCATTGAGAATTTTAGTGATAATGTTGACACTTATGTCCAGTGTTATTATCGGTGTCAACTTTAGTGACAAAGGGTCTCATTGTGTATGATGGCAAACAAGGTTTTATGTTGTTGCTTTATGTTAATGTTAGCTAAAGTTCTTGCTCATAATTATGTGATTTGATGTCTCTCTAGTCAAAATGGAACCAACGAGAAGTTTTGACTAGAGATTTAATAAAAAATGTTATAATGGCATATGATGATATTCTGACCAACGTTGATTATTCTCATGTGTTATTTGTGACTAAGCATCTTTTTGACTCATCCCATTGCATGGTTAATTCTTGCTTGATGTTTTGTTGTGATGCTCATAATGTTGTCTCCTTTATATATAGCAATGAACAATAATGATGTCAAACTTTTGTTTGCCATAGAAGAACCTTATGTAAATAACTTTTCCACATGGAGAGGTGAGATCATTGTCTCATGTAAGGAATCTCCCAATGTTTTTCTGCCACTAAGGTTGAAGGATGTTGATCATGATGATAAGGCAGACATTGGGAGAGGACGCATGTGCCATCATGCACATCACTAATGCAAAGGAGATTAAAGTCAAAACTACTGGATTTATTCCACTAGCTTTTGGAGATGACTTAATTCTTCATCTTATTGATAGTGTTTTGTTCATGCTCCTGGTTATTGAAGAACCTTAATTTCGTCTCTCGAATAGATGACGTGATTTTATATGTTATTAAGTCAACTCCAATTATGT
Scaffold5809	Ensembl_Plants	rRNA	32532	32642	.	-	.	ID=gene:ENSRNA049449543	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=CCTCATACACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCAAGAGTAGTACTTGGATGGGTGACCTCCTGGGAAGTCCTGCGCAAGGC	Scaffold5809	Ensembl_Plants	LTR/Gypsy	32612	36591	21654	+	.	ID=1470192	repeat_name=RLG_Nusif_3B_014_A09-2	repeat_type=LTRs	sequence=GATCCGGTGCTTTAGTGCTGGTGTATGAGGAGGCTGTCCTTAAGGCTGGGGCGACGACAAGGTCATGGCCAACTAGCTTCCCATGGCCCTCACTGGCGTGCCGCGCGCCTGGCTTCTCAACCTCCCCGGATCCACGATGGCATCTTGGGAGGAGCTGCGCGGCCTCTTCGCCGCGCGCTTCGCGACACCGGCGCCCTACGCGGTCGCGGCCCTCCTCGGCGGCTCGCAAGCTCCACCCTCGGATCGTCACATCAAGCCGTTCCTTCACCAGATCGGCGCCACTTCCAAGTGTTGGAAATATGCCCTAGCGGCAATACGTGCTTCCTATGCTATGCACGCCCACCATCTGCCATGTAGCCGTCACCAAGACCCTCATCGACGGCGGCGCCGGCCTCAACGTGCTCTCGGTGGAGGCCTTCAGCCTCCTTCACGTACCACTCGAGCGGCTCCGCCCCAGCAAGCCTTTCTCCGGCGTCGGAGGCGACTCCTCCAGCCCCCTGGGGCAGATCCATCTTCCCGTGACCTTCGGCACCCGCGACAACTACCGCACTGAGCTGATCGACTTTGACATCGCCCACATCGGCCTCCCGTACAACGGTATTCTCGGGTACCCGGCTCTAGCTTAGTTCATGGCGGCGACCCATCCGGCCTACAACCTCATGAAGATGCCTGGGAGCAAGGACGTCCTCACCATAGTGGGGGATACCAAGGAGGCTCTAACGGCACTCAAGCTTGCCCTCAAGACCGCTGCGGTGGCGCAACCGGCCGACGCGGGCACCTCCGGAGCTAAGGCGGCCCGCACCAACCAAGAAGAAGCAGTTGTTCACCCAGGACCAGGCAGAAACCAAGCAGGTGCTGGTCGAGGAAGACGGGTCCTCAGGGGCCACCTTCACCATAGGAGCCGACCTTGACCCCGACCAAGAGGAGGCACTAGTGAAGTTCTTCCATGCAAACAAGGAAGTATTCGCCTGGGAACCCGATCAGCTGGTAGGGGTCCCAAGAGGAGTGATTGAGCATCACTTGAAGGTATGCCCCAATGTACACCCAGTGAAGCAGAGGGCGCGGCGGCAGTCCACGGAGAAGCAGTCCTTCATCGTCCAAGAAACCCGCAAGCTGGAGGCAGCAGGCGTCATTCGCGAGGTCCGGTACCCTGAATGGTTGGCAAACCCCGTCGTTGTGCCCAAGAAAGGCGGAAAGGAGCGGATGTGTGTCGACATCACCAACCTCAACAAGGCCTGCCCCCAAGATCCGTTCCCGCTTCCACGCATCGACCAGATTGTCGACTCCACCGCCGAGTGTGTCCTTCTGTGCTTCCTGGATGCGTTCTCAGGCTACCACCAGATCAAGATGGCGGTAGAAGACGTCGAGAAGACGGCCTTCCTGACCCCGTGCGGGGTATAATGCTACACTTGCATGCCGTTTGGGCTGCGCAACGCGGGCGCGACCTTTCAACGACTGATGTGCATCGCACTAGGTTAGCAGCTTGGGAGGAACGCTGAAGCCTACGTCGACGACATTGTGGTGAAGTCTCGGGAGGCGAGAACTTTAATTCAGGACCTGGGGGAGACCTTCGAAAGCCTGCACTAGGTAGACTTGCGGCTTAACCCGGAGAAATGCGTGTTCGGCGTCCCCTCAGGCAAGCTGCTGGGTTTCCTCGTGTCCCACAGTGGGATCGAGGCGAACCCAGAGAAGGTCAAGGCAATCGAAGACATGAGTCCACCACAAACCCTCAAGGAGATGTAGAAGCTCGCCGGTCGCGTGACTGCGTTGGGGCGTTTCATCTCCAAGCTGGGAGAGCGCACCCTGCCGTTCTTCAAGCTGATGAAGAAAAAGGGACGATTCGAGTGGACTCCAGAGGCCGACCAAGCGTTTCAAGTCCTCAAGAGATACCTGACTAGCCCTCCGGTGATGGTAGCGCCCCGACCTCTCAAGCCCCTGGTGTTGTACCTTGCCGCCACCCCTTACTCCGCCAGCGCAGCTTTGGTGGCGGTCTGGGAGGAGCGCCGGGTCAGGGATGTGTCGCGCCAAGCCGCTCCCTCAGCCGGGGCGGCGCAAGACCCAGAGGGCTCCGCGAGGGCTGCAGCGACGCTAGCAAAGGACCAGGCTCAACAAGACGGCGCACTTGGGCCCGCGGAAGCCCCAACGAGCGACTAGGCTTTGGGGGCTTCGTCGTCTCAGGAGACGCCCCAACCTCCGGAAGCCGTGAGCCTCGTCCATGCACCCACCCTCGTCGAGCACCCTGTGTATTTTGTCAGCACGGTGTTGCGGGATGCAAGGCGCAGTACCCCATGCCTCAGAAGCTCCTGCTCGCGCTCTTGGTGGCCTCACGCAAGCTGCGGTACTACTTTCAAGGTCACCCGTTCAAGGTCATCTCGGCCTACCCATTGGAGAGGGTGCTCAGGAGCCCCAACTACGCCGGGAGAGTCGCTGAGTGGAACATCGAGCTACAGGCATTCCAGTTGGAGTTCAGCACAACCAGGGTCATCAAGGGAGCCGCGCTCTCTGATTTCGTGGTAGAATGGACGGACTCCCCAGGGCTTGAAGAAGGCGAGGATCGGTCCCTTTCGCCGGGGAGTGAAGCGCCAGACGGCTGGGTTATGTATTTCGATGGCGCCTTTGCGCGCCAGGGCGCAGGGGCTGCAACAGTGCTCATCTCACCCACTCAGGACAAGCTTTACTACGCCGTGCAGCTCTGCTTCCAGCAGGGTGAGAAGGTCTCCAACAACCTAGCAGAGTACGAAGGCCTCATAGCTGGCCTCAAGGCTGCGGTGGCCCTGGGGGTGAAGCGCCTCACCATCAAGGGTGACTCGCAGCTCCTCGTCAACTTCTCCAACAAGGTGTACAAGCCGAAGGACGAGCACATGGAGGCGTACCTCGCGGAGGTGCGCAATATGGAGAAGCAGTTCTTGGGCCTGGAATTGCAGCATGTGCCCCGTGGCACCAACAAGGAAGCTGACGACATCGCCAGGAGAGCATCCAAGCGGCTACACCAAGAGCCTGGCGTCTTCGAGGAGTGGCTCTTCAAGCCATCGGCAACACCGCCACTTTCAAGAACAGCGCTGCCTCGGGAGGAGCTCCCTCAACCAACTGCCTCGGGGGCCCCGGCCTGCGGCCCGACCTCGGGAGCATGCTTACTCTTGGTGCTTGAGCCTCAGGACGGGTGCTGGACCAGGGAATTCAAGGAATACGTGATGCAAGGGACGCTGCCTGAGAAGGAGGAGGACGCGGAGCGTGTGGCCCGACGGGCCACGACATACTGCATCCAGGACAGTGAGTTATACAGGAAACGACCGAATGACGTTTCCCTGCGTTGCATCTCCAAGGAGCAGGGGAAAGAGCTGCTGGCCGACATACATGGCGGGGACTGCGGGCACCACTCGTCGTCACGGACCCTCGTCGGCAAGGTGTTCGCAGCGGATTCTACTGGCCTACAACACTCAACGACGCGACCGAGCTGGTGAAGTCCTGCGAGGCCTGCTAGTTCCACGCCAAGCTAATCCATCAGCCGGCTCAGGGCCTCCAGACCATCCCACTCTCCTGGCCATTCGCGGTCTGGGGGCTGGATATCTTGGGCCCGTTCCCTCGAGCGCCTGGGGGCTACCGCTACCTCTACATCGCCATCGACAAGTTCACCAAGTGGGCGGAGGTAGAAGCCGTCCGCACCATCCCGGCCGGCTCCGCGGTCATGTTCATCAAAGGTCTCGTGCGCCGGTTCGGGGTACCCAACCGCATCATCACCGACAATGGCTCGCAGTTCACTAGCAATCTCTTCAAGACGTATTGTGCTAACCTTGGAACGCAGATCTGCTGCGCTTTGGTGGCGCGCCCCCGAAGCAATGGCCAGGCCGAACGCGCCAACGCAGAGGTCCTGAGAGGCCTCAAGACCAGGACCTTCAAGAAGAAGCTCGAGGCCTGTGGCAGGGGCTGGCACGACGAGCTCCAGTCCGTGTTGTGGTCCATCCGCACCACCGCCACGAAG
Scaffold152045	Ensembl_Plants	rRNA	680	792	.	+	.	ID=gene:ENSRNA049449300	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTATCAGCGGAGATGGACACCAAGCGAGGCAGATATCAGCCCGAGTCATCCAAGAGCAGCCG	Scaffold152045	Ensembl_Plants	LTR	735	2457	11520	-	.	ID=912935	repeat_name=LTR_AC207921.1_126	repeat_type=LTRs	sequence=GAGCCACTAGGGCCCTGAGCCTTGGGAGGCTCTGGGGGCTCAGGCGGATCCCTGAGGTCCGTCTCCATCTCTATCAGCACTGTGCGGTGCCTGGCCTCTTGAGTCCCCAGGGTGCGCCGCAAGTTGCGCTGGTAGACGAACGACACGCTCGGCAAGCCAACAGGCATGCGAACGTAGCTGTGTGGTGGACCCTCGCAGCGGCCCACGCGCGAAGGCCGGAAAAGCTCCTGAGAGGCGGCCCTGTTGAGCCCTAGGACGTCGATGCAGACGTGCAGCCCGGCATCCTCGCCTGGATTGGGAGCTGCGCCTCGTGAGCGGCGGTCGCCGCGCATGGCCCTTGCGTCCTGCAGTTCCTGAGTGGTCTTGGTGATGAACTCTTGAGCGGTGGGCGTTCCTTGCCCTGTGTTCTCCTGAGGGAAGCGTGCCATGAAGCACGCCTCCAAGTGGTGCCCAAGCGCCTCCCTCATGATGTGGGCAAGGTTTGAGGCCCTCAAGGAGAGAGCCCCCGAGCCTTGCTGGAGGAGGGCGCCGGGCGCGCCTTCCTATGCGATGGAGGGAGGCGCCCCTGGAGCAAGCGCTAATCCTGACGAGGCTCCAGCTGTGTTGCCGCCCTCCCGAGGCCCGGTACGGCGCAACTGCTTCTTCTTCTTGGGGATGGCCTCCGGAGGGGCATCGCGCTGGCTGTCGGGGTCGTCGATTGCTGCAACTTGAAAGGCGCGCTCGAGGGAGCACACCGCATCTCTTTCTTCGCATGGGACTGTGATGATTCCGCCGCTTCCCAGCATCTTGAGGATGTTGTTGCCATGGTGGGTCACTGCCATGAACTTGGCCAGGGCTGGATACCCTAGGATGGCATTGTATGGCAGACGGATGTGTGCAACATCAAAGTCGATGAGCTCGGTGCGGTAGTTCTTGCGCTCTCCGAAGGTGACAGGGAGGCGGACTTGCCCTATCGATGTGGTGGAGCCATCGGTCACTCCTGAGAAAGGCTTGGTAGGCTGAAGCTGGTCATATGGTACTTGGAGGTTGTCGAATGTGTCGACGGACAGGACGTTGAGCCCTGCGCCGCCGTCGATGATGGTCTTGGTAACTTGCACGTTGCTGATGACCGGTGAACAAAGCATTGGGAGAGCGCCAGCGGTGGCTGCGCACTTGAGCTAATCTGCCGAGTTGAAGGTGATGGCACACTGGGACCACCTGAGCGGGCGTGTGGCCTCAAGCTTGGGGAGGACTGCATTCACTTCATGAGCAAACTGTTAGAAGATACGCTGCGAGGCTGGGGCCTGAGCTCCACCCAAGATGCAGGTGAGAGCGCGCGACTCCTGGAAGCCCCCAGCCCCCTCGTCCTGATGGTGGTCGTCATTCCTTTTTGGCGGTGGCCGCGGCGGGGGAAGACCGGCGTTGCCCTGAGGACGATCCTCATGAGGCTGGTCCCTCCAGGCGCCCTCGCGAGGATGATCCTGCCAGCGGTCCTCACGAGGCCCGTCGCGCCACTCCTGGTGCGGGCCACGGTCGTCCCACTGTTTGCCACCACGTCCTGCCCCTCGGCCGTGGCCCCGGTCGCTGCGCTCGGGGTGTCAACCGAAGCGTCCTTCCCGAATGGCTCTGAGCTCTTGACAGTCGCTGGTGTTGTGGGTGTTCAGGTTGTGGAAGGCGTAGAACGGTCGGCTGCTCTTGGATGACTCGGGCTGATATCTGCCTCGCTTGGTGTCCATCTCCGCT
Scaffold152045	Ensembl_Plants	rRNA	680	792	.	+	.	ID=gene:ENSRNA049449300	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTATCAGCGGAGATGGACACCAAGCGAGGCAGATATCAGCCCGAGTCATCCAAGAGCAGCCG	Scaffold152045	Ensembl_Plants	LTR	417	2329	1950	+	.	ID=2238363	repeat_name=LTR_HVVMRXALLhB0050A01_v47_c1_3174	repeat_type=LTRs	sequence=CTGCGCCGCATCAAGCAACAACCAGGAGCGACCCTCCAGAAGTACATCCAGCGCTTCAACAACACTCGCCTCAAGATCCTTATGGTCATGGACGAGGCCATCATCTCCGCGTTCTCTGACGGCGTCCGCGACATCAAGATGAAGCAGGAGCTCGCTATCCACGAGGAGCTGTGCACATCTCAGGAGCTGTTCAACCTGGCGACCAAGTGCGCAAGAGCTGAGGAGGGGCAAGCATAAGGGACGAAGACGGGGGTAACATGTCGGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTATCAGCGGAGATGGACACCAAGCGAGGCAGATATCAGCCCGAGTCATCCAAGAGCAGCCGACCGTTCTACGCCTTCCACAACCTGAACACCCACAACACCAGCGACTGTCAAGAGCTCAGAGCCATTCGGGAAGGACGCTTCGGTTGACACCCCGAGCGCAGCGACCGGGGCCACGGCCGAGGGGCAGGACGTGGTGGCAAACAGTGGGACGACCGTGGCCCGCACCAGGAGTGGCGCGACGGGCCTCGTGAGGACCGCTGGCAGGATCATCCTCGCGAGGGCGCCTGGAGGGACCAGCCTCATGAGGATCGTCCTCAGGGCAACGCCGGTCTTCCCCCGCCGCGGCCACCGCCAAAAAGGAATGACGACCACCATCAGGACGAGGGGGCTGGGGGCTTCCAGGAGTCGCGCGCTCTCACCTGCATCTTGGGTGGAGCTCAGGCCCCAGCCTCGCAGCGTATCTTCTAACAGTTTGCTCATGAAGTGAATGCAGTCCTCCCCAAGCTTGAGGCCACACGCCCGCTCAGGTGGTCCCAGTGTGCCATCACCTTCAACTCGGCAGATTAGCTCAAGTGCGCAGCCACCGCTGGCGCTCTCCCAATGCTTTGTTCACCGGTCATCAGCAACGTGCAAGTTACCAAGACCATCATCGACGGCGGCGCAGGGCTCAACGTCCTGTCCGTCGACACATTCGACAACCTCCAAGTACCATATGACCAGCTTCAGCCTACCAAGCCTTTCTCAGGAGTGACCGATGGCTCCACCACATCGATAGGGCAAGTCCGCCTCCCTGTCACCTTCGGAGAGCGCAAGAACTACCGCACCGAGCTCATCGACTTTGATGTTGCACACATCCGTCTGCCATACAATGCCATCCTAGGGTATCCAGCCCTGGCCAAGTTCATGGCAGTGACCCACCATGGCAACAACATCCTCAAGATGCTGGGAAGCGGCGGAATCATCACAGTCCCATGCGAAGAAAGAGATGCGGTGTGCTCCCTCGAGCGCGCCTTTCAAGTTGCAGCAATCGACGACCCCGACAGCCAGCGCGATGCCCCTCCGGAGGCCATCCCCAAGAAGAAGAAGCAGTTGCGCCGTACCGGGCCTCGGGAGGGCGGCAACACAGCTGGAGCCTCGTCAGGATTAGCGCTTGCTCCAGGGGCGCCTCCCTCCATCGCATAGGAAGGCGCGCCCGGCGCCCTCCTCCAGCAAGGCTCGGGGGCTCTCTCCTTGAGGGCCTCAAACCTTGCCCACATCATGAGGGAGGCGCTTGGGCACCACTTGGAGGCGTGCTTCATGGCACGCTTCCCTCAGGAGAACACAGGGCAAGGAACGCCCACCGCTCAAGAGTTCATCACCAAGACCACTCAGGAACTGCAGGACGCAAGGGCCATGCGCGGCGACCGCCGCTCACGAGGCGCAGCTCCCAATCCAGGCGAGGATGCCGGGCTGCACGTCTGCATCGACGTCCTAGGGCTCAACAGGGCCGCCTCTCAGGAGCTTTTCCGGCCTTCGCGCGTGGGCCGCTGCGAGGGTCCACCACACAGCTACGTTCGCATGCCTGTTGGCTTGCCGAGCGTGTCGTTCGTCTACCAG
Scaffold53840	Ensembl_Plants	rRNA	20811	20927	.	+	.	ID=gene:ENSRNA049448845	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=ATTACTTTTGATATAGAGATCATTGAAACTCACTATAGTCCCATAGGTATGAGACTGATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTT	Scaffold53840	Ensembl_Plants	LTR	19297	20847	4070	-	.	ID=948308	repeat_name=LTR_AC207953.1_170	repeat_type=LTRs	sequence=TATAGTGAGTTTCAATGATCTCTATATCAAAAGTAATTCTTTTTGCCACTTAAGGGAATGATTCTATGAGTCATCTGCCCTAAGGTGCCCCGTTATGGGATCGTGGCAATTAACTCCTCGCCACTATGGAACCCATCCACCATCTTATTAGGCGTGGACTTGTTGCCTACCAATTTGAACCTTCGTCATCTGCCTTCCATCACCTCTTGATGTGTGTTTGTGGCTCATCTCAAGAGATGATTCAACGTCTCATTTCGCGAGTTCATCATGAGTTGCTCGATCTTTGAGAAGATCAATTCATGTAGGGTACCTCGTTCCTTTTGTCGTCGTTTTCGATGAAGATCTCAAAAGCAAAGGCGTCAAGATCAATTTGAAGCAATGAATCAACATCTTCGAGAAGGGCATCTGGATCGTGAAGATTGTGCTAGCTTTGTGTCCCCTTTGTCTTCTTACCTCACGTCTTGAATCTCGGGACGAGATTCTTGTTTAGTGGGGGCGAGTTGTCACATCCCTAGTCCTGGTATGCACTAGGCTAGCCCTTCATGTGTGCATCATCTTTAAATTTTCAAATGAACTTGAAACGGCGGATGTTCAAACCCTAGCATAAAAAGGAATCCACTAGGTTCAACTAAAATATTTTTCAGTGAACCCAAATGGCCTTCAAAAAATTTCATCATTTTAGGAAAATGCTGGAAACAGCAACAAGAGATGATGCACATTTTTGCATGACATTTTGGATTGTTGAATTAACACATATTGTATTTTAAATTGGAGCAAATAAATACTATAAATACTTTATTGCTCCAATAATTATGATTTTTGTTGAGGGGCTATGGAATAGTTCTTTTAGTCCCTGCAAAATTTATCGGAAGCAACAAAATTAGTTTGGTTCAAAAACCAAATTAAAACAAATGTTAGAAATAGAAAACAGAAACAAAATAGAGAAAAGGAGAAACTTACCTGGCCCTTACCTGTCCAGCTGGCCGGCCTGCTACTGTGCAGCCCAGCCCACAGCGCAGTGCCAGTCACCCTCAACCTCCCACCAGGAGGATGAGAGGCGCGTGGCCACCGCACGCAAGCACGCGCCCCGGCCACCTCCTGCTTGCCGCCTCCCTCTGGACCTCCCGGACGACGCCATGCACGCCCCGTGCACAACCCTCTCCCCTCCTCGCAGCTCTCTCTCCCTCCCCTCTCTGCTCTCTTCCCGAGCAGAGCCCGTCGCCGCCGCTCATCGCCTACGTAGCCACAGCCTCCCCCCTCGACCTCTCTTCGTGCTCTGAAGAACCGCCACGGCCGCCTCTTCCTCCTCGAAGACCCACACAAGCCCGGACGCCCTGTAGAGCGGCCTTCAACGCCGTCTTCTTCCTCGATGCCGTGGATCGCCGTCGTCGATTTCGCCGCGTACAAGAGCTCCCCGAGCACTCTGAGCGTCTCTGCGAGATCAACGTGAGCCCCCGCATCATCTCCCACTGTTTTCCCTCTCGTTTTCGTCCTCTAGCCGTGGCCCCCTTTGACCGAGCGCCGCCGTCCGCCATGGATGTCGGCCATGG
Scaffold87558	Ensembl_Plants	rRNA	1876	1967	.	-	.	ID=gene:ENSRNA049448091	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCATTATTTTGGGTATGAAACCCATTTGGGCAAGAGTAGTACTAGGATGGGTGATCTCCCGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold87558	Ensembl_Plants	LTR/Copia	1827	1969	1178	-	.	ID=2084475	repeat_name=trep3125	repeat_type=LTRs	sequence=TAAAAACTAGCCATTATTTTGGGTATGAAACCCATTTGGGCAAGAGTAGTACTAGGATGGGTGATCTCCCGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACTCCAACTTGTTTGGGATAACAGGCTTCATAAGTAA
Scaffold238218	Ensembl_Plants	rRNA	934	1053	.	-	.	ID=gene:ENSRNA049448266	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=CAACAAGTGGCTGTTAAGTGAGGTGGTGCTGGATCCCATTAGAACTACGAAGTTAAGCGTGCTCGGCCTGGAGTAGTGTGAGGATGGGTGACCTTCCGGGAAGTTTGACCACTTAGTTGC	Scaffold238218	Ensembl_Plants	LTR	834	1319	2992	-	.	ID=406563	repeat_name=LTR_HVVMRXALLhA0639B21_v3_c4_2889	repeat_type=LTRs	sequence=AAAATCCTCAAAAACCTAACAGAAAAAATGATACGGGGCTTTCAAGATCTAGAGGCAAAAAAATTCAAACTTACTAGTGGCGCACCGGTTGCTAGGTGCGCCACTAGTAACAGAAAAAAAATATTTGTTTTGATTTTTTTTTCAAAAAATGATTCGTAATATGACAGGGAAGTTTCAAATATTTTTCAAAATTTCATCATACTCATGAATATGAACAAAGTCCTAGACATCAACAAGGTTTAATAGGATTGATATGATAGATATATCAACAAGTGGCTGTTAAGTGAGGTGGTGCTGGATCCCATTAGAACTACGAAGTTAAGCGTGCTCGGCCTGGAGTAGTGTGAGGATGGGTGACCTTCCGGGAAGTTTGACCACTTAGTTGCGATTTGACTTGAGATTAAGCATATTGACCCGAGATTAAGCCATAGTGACGAGAGATTAAGAAAAAAACAAAAACAATTTTGACAAAATTTGAAAAAAAT
Scaffold238218	Ensembl_Plants	rRNA	934	1053	.	-	.	ID=gene:ENSRNA049448266	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=CAACAAGTGGCTGTTAAGTGAGGTGGTGCTGGATCCCATTAGAACTACGAAGTTAAGCGTGCTCGGCCTGGAGTAGTGTGAGGATGGGTGACCTTCCGGGAAGTTTGACCACTTAGTTGC	Scaffold238218	Ensembl_Plants	DNA/En-Spm	803	1287	2593	-	.	ID=2181972	repeat_name=trep2221	repeat_type=Type II Transposons	sequence=ACGGGGCTTTCAAGATCTAGAGGCAAAAAAATTCAAACTTACTAGTGGCGCACCGGTTGCTAGGTGCGCCACTAGTAACAGAAAAAAAATATTTGTTTTGATTTTTTTTTCAAAAAATGATTCGTAATATGACAGGGAAGTTTCAAATATTTTTCAAAATTTCATCATACTCATGAATATGAACAAAGTCCTAGACATCAACAAGGTTTAATAGGATTGATATGATAGATATATCAACAAGTGGCTGTTAAGTGAGGTGGTGCTGGATCCCATTAGAACTACGAAGTTAAGCGTGCTCGGCCTGGAGTAGTGTGAGGATGGGTGACCTTCCGGGAAGTTTGACCACTTAGTTGCGATTTGACTTGAGATTAAGCATATTGACCCGAGATTAAGCCATAGTGACGAGAGATTAAGAAAAAAACAAAAACAATTTTGACAAAATTTGAAAAAAATTTAAAAAAAATTCAAAAAAAAATTTGACAAA
Scaffold2102	Ensembl_Plants	rRNA	101103	101258	.	-	.	ID=gene:ENSRNA049479705	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=GACTCTCGGCAACAGATATCTCGGCTCTCGCATCGATCAAGAACGTAGAAAAATGCGATACCTTGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTGGAACGCAAGTTGCGCCCGAGGCCACTCGGCTGAGGGCACGCCTGCCTGGGCATCA	Scaffold2102	Ensembl_Plants	LTR/Gypsy	101101	101259	1112	-	.	ID=2210343	repeat_name=LTR_Al_scaffold_0003_560	repeat_type=LTRs	sequence=CGACTCTCGGCAACAGATATCTCGGCTCTCGCATCGATCAAGAACGTAGAAAAATGCGATACCTTGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTGGAACGCAAGTTGCGCCCGAGGCCACTCGGCTGAGGGCACGCCTGCCTGGGCATCAC
Scaffold2102	Ensembl_Plants	rRNA	138172	138327	.	-	.	ID=gene:ENSRNA049479696	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=GACTCTCGGGAACGGATATCTTGTCTCTCGCATCGATGAAGAATGTAGCGAAATGCGATACCTGGTGTGAGTTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCACCCGAGGCCACTCGGCCGAGGGCACGCATGCCTGGGCGTCA	Scaffold2102	Ensembl_Plants	LTR/Gypsy	138171	138354	1119	-	.	ID=2210344	repeat_name=LTR_Al_scaffold_0003_560	repeat_type=LTRs	sequence=TGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGGAACGGATATCTTGTCTCTCGCATCGATGAAGAATGTAGCGAAATGCGATACCTGGTGTGAGTTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCACCCGAGGCCACTCGGCCGAGGGCACGCATGCCTGGGCGTCA
Scaffold2102	Ensembl_Plants	rRNA	176065	176449	.	+	.	ID=gene:ENSRNA049479665	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TTGCTCGAGCTGCTCACGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACCGGGAATCGCCCCTTCGGGGGCTTTCCCCGAGCATGAAACAGTCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGG	Scaffold2102	Ensembl_Plants	LTR/Gypsy	176042	176661	4798	+	.	ID=2210347	repeat_name=LTR_Al_scaffold_0003_560	repeat_type=LTRs	sequence=GAACCCGTCGGCTGTCGGCGGATTGCTCGAGCTGCTCACGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACCGGGAATCGCCCCTTCGGGGGCTTTCCCCGAGCATGAAACAGTCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCAGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGATTTGTGAAATGACTAGTTGTAGGATAAGTGGGAGCCCTCACGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGGGTCGGAAGCGGGGCATGTCCCCTCCTTTTGGCTCCAAGGCCCGGTCTTACCGGGCCGATCCGGGCGGAAGAC
Scaffold23850	Ensembl_Plants	rRNA	19852	20007	.	+	.	ID=gene:ENSRNA049479552	Name=5_8S_rRNA	biotype=rRNA	description=5.8S ribosomal RNA	sequence=AACTCTCGGCAACTGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCAATACCTGGTGTGAATTGCAGAATCCCGCAAACCATCAAGTCTTTGAATGCAAGTTGTGCCCGAGGCCACTCGGCCGAGGGCACGCCTGCATGGGCATCA	Scaffold23850	Ensembl_Plants	LTR	19850	20229	12267	+	.	ID=2247859	repeat_name=LTR_Al_scaffold_0003_561	repeat_type=LTRs	sequence=CAACTCTCGGCAACTGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCAATACCTGGTGTGAATTGCAGAATCCCGCAAACCATCAAGTCTTTGAATGCAAGTTGTGCCCGAGGCCACTCGGCCGAGGGCACGCCTGCATGGGCATCACGCCAAAACATGCTCCCAACCACCCTCATCGGGAATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGACAAGGGTGCCGGTGTACCGCGCCGGACACAGCGCATGGTGGGCATCCTCGCTTTATCAACGCAGTGCGTCCGATGCGCAGCCGGAATTATGGCCTAAGAACGACCCAGCAAACGAAGCGCACGTCGCTTCGACCAC
Scaffold79880	Ensembl_Plants	rRNA	2957	3075	.	+	.	ID=gene:ENSRNA049479157	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=CGATGCAATCATACCAGCACTAAAGCACCGGATGCAATTAGAACTCCGAAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGTATTCC	Scaffold79880	Ensembl_Plants	LTR	2995	3059	276	+	.	ID=2115893	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=AGAACTCCGAAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
Scaffold79880	Ensembl_Plants	rRNA	9063	9181	.	+	.	ID=gene:ENSRNA049479137	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGTGATCATACCAGCACTAAATCACCAGATCCCATCAGAACTCTGAAGTTAAGCGTGCTTGGATGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTTGTGTTGCATTCC	Scaffold79880	Ensembl_Plants	LTR	9093	9165	305	+	.	ID=2115902	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=ATCCCATCAGAACTCTGAAGTTAAGCGTGCTTGGATGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGT
Scaffold79880	Ensembl_Plants	rRNA	4712	4830	.	+	.	ID=gene:ENSRNA049479118	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCTCATCAGAACTCCGAAGTTAAGCGTGCTTGGTCGAGAGTAGTACTAGGATGGATGACCTCCTGGGAAGTCCTCGTGTTGCGTTCC	Scaffold79880	Ensembl_Plants	LTR	4741	4814	304	+	.	ID=2115895	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=GATCTCATCAGAACTCCGAAGTTAAGCGTGCTTGGTCGAGAGTAGTACTAGGATGGATGACCTCCTGGGAAGT
Scaffold79880	Ensembl_Plants	rRNA	8615	8733	.	+	.	ID=gene:ENSRNA049479112	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACTGGATCCCATCAGAACTCCAAAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCACCTGGGAAGTCCTTGTGTTGCATTCA	Scaffold79880	Ensembl_Plants	LTR	8644	8717	312	+	.	ID=2115901	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=GATCCCATCAGAACTCCAAAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCACCTGGGAAGT
Scaffold79880	Ensembl_Plants	rRNA	8167	8285	.	+	.	ID=gene:ENSRNA049479102	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGTGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGATGTCCTCGTGTTGCATTCC	Scaffold79880	Ensembl_Plants	LTR	8196	8269	308	+	.	ID=2115900	repeat_name=LTR_HVVMRXALLmA0294L17_ipk25_c2_3578	repeat_type=LTRs	sequence=GATCCCATCAGAACTCCGAAGTTAAGTGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGATGT
C141088066	Ensembl_Plants	rRNA	865	939	.	+	.	ID=gene:ENSRNA049479022	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=TATGAAACCCATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGAAAGGGTTTCATAT	C141088066	Ensembl_Plants	LTR/Copia	760	972	1843	+	.	ID=2084477	repeat_name=trep3125	repeat_type=LTRs	sequence=ACTCCACCTATGTCTTCTAGGCATAGCCGGTCTCAAGCCCGGCTAAAGAAGGAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCAAGTCCCATAGGTATGAAACCCATTTGAGCGAGAGTAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCAACGT
Scaffold77162	Ensembl_Plants	rRNA	11488	11579	.	-	.	ID=gene:ENSRNA049478121	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold77162	Ensembl_Plants	LTR/Copia	11308	11644	2735	-	.	ID=2084462	repeat_name=trep3125	repeat_type=LTRs	sequence=AGGCATAGCCGGTACCAAGCCTGGGTAAAGGAGGAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCCATGGGTATGAAACCCATTTGAGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGGCAAAAGGCTTAGTAAGTAAG
Scaffold123235	Ensembl_Plants	rRNA	21311	21740	.	-	.	ID=gene:ENSRNA049478102	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=ACAGCTCAGCAGTCGGCCCGAATCTCGGGGATTAAACTGAGAAGCTGCGAATGGCCCATTAAATCAGTTATAGTTTGTTTGACAGTACGCGCTACTCTGATAACCGTAGTAATTCTAGAGCGAATACGCGCAACAAACCCCGACTTCTGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTGCTCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACGGCCTTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTGGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGAC	Scaffold123235	Ensembl_Plants	LTR/Gypsy	21692	21801	615	-	.	ID=1889361	repeat_name=LTR_AC207910.1_114	repeat_type=LTRs	sequence=CCGCTGCAAAGTCGGAAGAAGAAGAAGAACAGTAAGAAATCGTCAAGGAAGATCCGACCCGACAGCTCAGCAGTCGGCCCGAATCTCGGGGATTAAACTGAGAAGCTGC
Scaffold213467	Ensembl_Plants	rRNA	313	382	.	+	.	ID=gene:ENSRNA049476966	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=TTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAA	Scaffold213467	Ensembl_Plants	DNA/En-Spm	1	652	4240	-	.	ID=1769428	repeat_name=DTC_Jorge_3B_035_C19-1	repeat_type=Type II Transposons	sequence=ACGTCGCTCCATGGTGGGCGCAAAGGCAGCCCCCCCTCCACCCATTTCGGATCGTAATCAAGAAGAAGATAAATGTTCTGAGGGGGATTCAGAAGCAGAATACCACTCCTAGTTACCCCATGAGGTCTTCGCTCTAACTTGGCATGCTGATGTTGGTTATATCATGCATATGGTGCCTTGCATTGCTTACTTTATACATCAAATATGTCAACTGCTTAGTTTAGACATGCTTTGTGTGAATGCCATCTGTTTAGTTTATTCATCATTTATTTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATNNNNNNNNNNNGCCAGTCATCTTATATGTGAATTATATCAGGCCATCCTTTTTTTTGTTACGTATTACATTTGTCAACAATGTTAGTACATTCAACTACTCTTCGTGTGCATCAGCCACTTGACACGGTGATGGAAAATTCTGGAGTGAGGTCTTCAGAGCAGACTATGCTATCTGACGAAGCGCATATCTCGCCGGTTACGGATAGCTCCTCAGAGGAGGATTGAGAGACAGATGACCAGTCCTATGCCCCCCGAGGTGCATGCTCTAACTTGGCAGGGTTATGTTGCTCATATCGTGCGTATGGTATC
Scaffold20059	Ensembl_Plants	rRNA	5762	7172	.	-	.	ID=gene:ENSRNA049476933	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=CGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAACTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCTGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATCCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGTGAGGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGTCTAACCGCCGCACCGATCATTCGGGGGGCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCAAAGGTAGGCTCAAGCCTTGATTCTGCTCATGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAGCCCTAGTACGAGAGGACTGGGCTGGGTCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGCTGCGCCGCGGGAAATTGTGACGCCCGGATAATTAGGCTACAGTAAACCTACGCTAATGATGCCACGTCACCTCTGTTACTGTTGCTAACATCGCGTTAGAACAAAACGTTTCAAAATCAAATTTGAATTTTAGGCAAACATTAAAAGTTTTCGAACATAAAGACTAAAATGTTCTAGAGGTGACAAATATCGCATAGTTAATTATGGTGGAGAATCCACATATTTATAAAATATTTAAGTGCATTAAAATGATTTAACCTGTAGTGAAAACAATTAAATAAATGCCTAATTTTTATAAGATATTAAAACTATTTTATTATGGTCTAGGAATTAATCTGACAGTAGTTTA	Scaffold20059	Ensembl_Plants	LTR/Gypsy	5414	6102	2071	-	.	ID=2148339	repeat_name=RLG_Latidu_3B_053_M17-1	repeat_type=LTRs	sequence=GGGAAATTGTGACGCCCGGATAATTAGGCTACAGTAAACCTACGCTAATGATGCCACGTCACCTCTGTTACTGTTGCTAACATCGCGTTAGAACAAAACGTTTCAAAATCAAATTTGAATTTTAGGCAAACATTAAAAGTTTTCGAACATAAAGACTAAAATGTTCTAGAGGTGACAAATATCGCATAGTTAATTATGGTGGAGAATCCACATATTTATAAAATATTTAAGTGCATTAAAATGATTTAACCTGTAGTGAAAACAATTAAATAAATGCCTAATTTTTATAAGATATTAAAACTATTTTATTATGGTCTAGGAATTAATCTGACAGTAGTTTATTTATAAATACAAAATTAGATACTAGTGGTAATTTTTATAAAACTAAAAATAAAAGAAAAGAAATAAAAAAAGACAAAAAAAATAAAAGGGTGGAAAAGGGGACCCTTCTCCCCCTCGGCCCAATTGGGCCTTGGCCTAGTTAGGCCAGCCCAGCCGCCCCTCCATAACCCCCTCACCCGTAACCCTAGCTACCGGTCGCCCCACTCCCCTCCCCACGATTCCCACGCCTCTCCCTCCCTCGATCCACATCTCCCCTCCTCTGCCCCCGATTGGATTGGAGGGATCGACCCCATCATTGCGCCGCTGCCCGCCGTCCTCCCCGCCACCGACGTTAAAGCCCGCCGCC
Scaffold117953	Ensembl_Plants	rRNA	171	854	.	+	.	ID=gene:ENSRNA049447817	Name=LSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic large subunit ribosomal RNA	sequence=CTTGAGTTTTGGACCTGTTACGGACAAAAGGAGAAGACAACCATTGTACCGATCCACTACTTGAATCTACGAGGACTCCTAAACCATGAAAACAGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATATTCCTGGGTGACCGATAGCGAAGTAGTACCATGAGGGAAAGGTGAAAAGAACCCCCAGTGGGTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAATGGGAGGGCAAAGTGGAAAATGAAAAAAGCATATCGTTCTTAGAAATTGTGGAATTTGACTCAGTTAGAGCTATGGTTTAGCATCAAGAGGGAAGTTTTGTAAAAGCAACAGGAAGAATTGCTCAAGGGGCGCTCCGCTCCTAGTCACTAAGCAGCTATTCTGTCCGACGGCGGACTCCATTAATCTGAGGTTCTTTCTCTCACGTAATTTCGCCCGCCTGTTCTACTTCCGTCTTAATCCTTCGTGCTCCACACCCGCCTCACTGGACCTATCCATTCGAGCTCTCTCCTCTAATCCCAACTCGACACGG	Scaffold117953	Ensembl_Plants	LTR	628	668	332	-	.	ID=2151337	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTT
Scaffold161325	Ensembl_Plants	rRNA	114	205	.	-	.	ID=gene:ENSRNA049447270	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold161325	Ensembl_Plants	LTR/Copia	65	207	1281	-	.	ID=2084469	repeat_name=trep3125	repeat_type=LTRs	sequence=TAAAAACTAGCCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACTCCAACTTGTTTGGGATAACAAGCTTCATAAGTAA
Scaffold158432	Ensembl_Plants	rRNA	11026	11308	.	+	.	ID=gene:ENSRNA049475584	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTAAGGGTGGTGGTGCATGGCTGTTCTTAGTTGGTGGAGCGAAGTGTCTTGTTAATTCCGTTAACGAACGAGACCTCAGCCTACTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGCCAATAACAGGTTTGTGATGCCCTTAGATGTTCTAGGCCAC	Scaffold158432	Ensembl_Plants	LTR	11303	11516	1390	-	.	ID=1305475	repeat_name=LTR_AC200828.1_75	repeat_type=LTRs	sequence=TAGACACCGGAGAGATCTAGGGTTACATGGAGTCAGTTACATAAGAAGGAATCTTCACAGCTGGTTGCCTAGCTTGCCTTCCACGCCAAGGAAAGTCCAATCCAAACACGTGTATAGTCTTCGGCCCTCATATCTTCACAGCCCATCAGTCCGGCCCAATAAATAACAGGCCGGACGCCCGAGGAACCCTTAGTCCACGACTCCCTCAGTGGC
C141054532	Ensembl_Plants	rRNA	2	74	.	+	.	ID=gene:ENSRNA049475463	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=CCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGAAGTCCTCGTG	C141054532	Ensembl_Plants	LTR/Copia	1	151	1223	+	.	ID=2084473	repeat_name=trep3125	repeat_type=LTRs	sequence=CCAGTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGAAGTCCTCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTATTTGGGATAAAAGGCTTCGTAAGTAAGTACGAGAACCAAGTTTTA
Scaffold258383	Ensembl_Plants	rRNA	667	758	.	+	.	ID=gene:ENSRNA049474256	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCTTTTGGGTATGAAACCCATTAGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold258383	Ensembl_Plants	LTR/Copia	665	764	910	+	.	ID=2084474	repeat_name=trep3125	repeat_type=LTRs	sequence=AAAAACTAGCCAGTCTTTTGGGTATGAAACCCATTAGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTTTCATATCT
Scaffold49409	Ensembl_Plants	rRNA	15327	15446	.	-	.	ID=gene:ENSRNA049474070	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACGAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCCCTTTAGGGTTCCCC	Scaffold49409	Ensembl_Plants	LTR/Copia	14157	15864	9769	+	.	ID=91889	repeat_name=Angela1_AT_LTR	repeat_type=LTRs	sequence=GTTGGAAATATGCCCTAGAGGCAATAATAAAATGGTTATTATTATATTTCCTTGTTCATGATAATTGTCTATTGTTCATGCTATAATTGTGTTATCCGGAAATCGTAATACTTGTGTGAATACATAGACCACAACGTGTCCCTAGTAAGCCTCTAGTTGACTAGCTCGTTGATCAATAGATGGTCACAGTTTCCTGACCATGGACATTGGATGTCGTTGATAATGGGATCACATCATTAGGAGAATGATGTGATGGACAAGACCCAATCCTAAGCATAGCACAATATCGTGTAGTTCGTCTGCTAAAGCTTTTCTAATGTCAAGTATCATTTCCTTAGACCATGAGATTGTGAAACTCCCGGATACCGTAGGAATGCTTTGGGTGTACCAAACGTCACAACGTAACTGGGTGGCTATAAAGGCACACTGCGGGTATCTCCGAAAGTGTCTGTTGAGTTGGCACGAATCGAAACTGGGATTTGTCACTCCGTGTGACGGAGAGGTATCTCTGGGCCCACTCGGTAAGACATCATCATAATGAGCTCAATGTGACCAAGGAGCTGATCATGGGATGATGTGTTACGAAACGAGTAAAGAGACTTGCCGGTAATGAGATTGAACAAGGTATAGGGATACCGACGATCGAATCTCGGGCAAGTATCATACCGGTAGACAAAGGGAATTGTGTACGGGATTGATTGAATCCTCGACATCGTGGTTCATCTGATGAGATCATCGTGGAACATGTGGGAGCCAACATGGGTATCCAGATCCCGCTGTTGGTTATTGGTCGGAGAGATGTCTCTGTCATGTCTGCATGATTCCCGAACCCGTAGGGTCTACACACTTAAGGTTCGGCGACGCTAGAGTTATTATGGGAAATAGTATGAAGTTACCGAATGTTGTTTGGAGTCCCGGATGAGATCCCGTATTTCACGAGGAGTTCCGGAATGGTCCGGATGTGAAGATTTATATATGGGAAGTCATCATACGGTCACCGGAAGTGTTCGGGGGTTTATCGATATTGTACCGGGACCACCGAAGGGGTTCCGGGGGTCCACCGGGAGGGTCCACCTGCCTCGGAGGGCCCTATGGGCTGTATGTGGAAGGGAACCCGCCCATAAGTGGGCTGGGCGCCATCCCCCTAGGGCCCATGCGCCTAGGGTTGGGGGGAACCCTAAAGGGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTTCGGAGTTCTGATGGGATCCGGTGCTTTAGTGCTCGTATGATCGCATCCGACATGTTACCCCCGTCTTCGTCCCTTATGCTTGCCCCTCCCAGCTCCAACACCCCCTCCTCCTCCGTTGAGCTTGGCGAAGCCCTGCCGGAGAACTGCAAGCGCCACCACCACGCCGTCGTGCTGCCGGAGCTCTTTCCCAACTTCTCCTCCCCCCTTGCTGGATCAAGAAGGAGGAGACGTCCCTGGGCTATACGTGCGTTGAACGCGGAGGCGCCGTTGTTCGGCGCTTAGATCAGAATCAACCGCGATCTGAATCGCTATGAGTACGACTCCTTCATCCGCGTTCTTGTAACGCTTCCGCGTCATGATCTTCAAGGGTATGAAGATGCACTCCCCTCTCTCTCGTTGCTAGTCTCTCCATAGATTGATCTTGGTGATGCGTAGAAAAAATTAATTTCTGCAACGATCCCCAACA
Scaffold49409	Ensembl_Plants	rRNA	15327	15446	.	-	.	ID=gene:ENSRNA049474070	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACGAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCCCTTTAGGGTTCCCC	Scaffold49409	Ensembl_Plants	LTR	15344	15417	335	+	.	ID=968441	repeat_name=LTR_HVVMRX83KhA0060C11_v43_c1_189	repeat_type=LTRs	sequence=CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTTCGGAGTTCTGATGGGATCC
Scaffold49409	Ensembl_Plants	rRNA	15327	15446	.	-	.	ID=gene:ENSRNA049474070	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=GGATGCGATCATACGAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCCCTTTAGGGTTCCCC	Scaffold49409	Ensembl_Plants	LTR	14154	15331	7682	-	.	ID=1483039	repeat_name=LTR_HVVMRX83KhA0181D24_ipk16_c3_593	repeat_type=LTRs	sequence=TCCCCCCAACCCTAGGCGCATGGGCCCTAGGGGGATGGCGCCCAGCCCACTTATGGGCGGGTTCCCTTCCACATACAGCCCATAGGGCCCTCCGAGGCAGGTGGACCCTCCCGGTGGACCCCCGGAACCCCTTCGGTGGTCCCGGTACAATATCGATAAACCCCCGAACACTTCCGGTGACCGTATGATGACTTCCCATATATAAATCTTCACATCCGGACCATTCCGGAACTCCTCGTGAAATACGGGATCTCATCCGGGACTCCAAACAACATTCGGTAACTTCATACTATTTCCCATAATAACTCTAGCGTCGCCGAACCTTAAGTGTGTAGACCCTACGGGTTCGGGAATCATGCAGACATGACAGAGACATCTCTCCGACCAATAACCAACAGCGGGATCTGGATACCCATGTTGGCTCCCACATGTTCCACGATGATCTCATCAGATGAACCACGATGTCGAGGATTCAATCAATCCCGTACACAATTCCCTTTGTCTACCGGTATGATACTTGCCCGAGATTCGATCGTCGGTATCCCTATACCTTGTTCAATCTCATTACCGGCAAGTCTCTTTACTCGTTTCGTAACACATCATCCCATGATCAGCTCCTTGGTCACATTGAGCTCATTATGATGATGTCTTACCGAGTGGGCCCAGAGATACCTCTCCGTCACACGGAGTGACAAATCCCAGTTTCGATTCGTGCCAACTCAACAGACACTTTCGGAGATACCCGCAGTGTGCCTTTATAGCCACCCAGTTACGTTGTGACGTTTGGTACACCCAAAGCATTCCTACGGTATCCGGGAGTTTCACAATCTCATGGTCTAAGGAAATGATACTTGACATTAGAAAAGCTTTAGCAGACGAACTACACGATATTGTGCTATGCTTAGGATTGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATCCCATTATCAACGACATCCAATGTCCATGGTCAGGAAACTGTGACCATCTATTGATCAACGAGCTAGTCAACTAGAGGCTTACTAGGGACACGTTGTGGTCTATGTATTCACACAAGTATTACGATTTCCGGATAACACAATTATAGCATGAACAATAGACAATTATCATGAACAAGGAAATATAATAATAACCATTTTATTATTGCCTCTAGGGCATATTTCCAACAGT
Scaffold9234	Ensembl_Plants	rRNA	134572	134663	.	+	.	ID=gene:ENSRNA049472545	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTAAAAGGGTTTC	Scaffold9234	Ensembl_Plants	LTR/Copia	134533	134708	1569	+	.	ID=2084435	repeat_name=trep3125	repeat_type=LTRs	sequence=ATATCTAAGGGTTGTGATAGGCTTGGCAAGCCAACGTAAAAACTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTAAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGACAAAAGGCTTAGTAAG
Scaffold19648	Ensembl_Plants	rRNA	178852	178944	.	-	.	ID=gene:ENSRNA049472521	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAGCTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAATGGTTTCA	Scaffold19648	Ensembl_Plants	LINE	178913	178975	395	-	.	ID=1512301	repeat_name=RIX_Stasy_3B_078_H18-1	repeat_type=Type I Transposons/LINE	sequence=AGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAGCTAGCCAGTCCTTTGGGTATGAAACCC
Scaffold19648	Ensembl_Plants	rRNA	178852	178944	.	-	.	ID=gene:ENSRNA049472521	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAGCTAGCCAGTCCTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAATGGTTTCA	Scaffold19648	Ensembl_Plants	LINE	178811	178858	363	+	.	ID=1823235	repeat_name=trep3323	repeat_type=Type I Transposons/LINE	sequence=CTAAGCCTTTTGTCCCAAACAAGTTGGGGTAGGCTAGATATGAAACC
Scaffold12727	Ensembl_Plants	rRNA	40928	41019	.	+	.	ID=gene:ENSRNA049471505	Name=5S_rRNA	biotype=rRNA	description=5S ribosomal RNA	sequence=AAAACTAGCCAGTCTTTTGGTTATGAAACCCGTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGAAAGGGTTTC	Scaffold12727	Ensembl_Plants	LTR	40984	41051	288	-	.	ID=2218284	repeat_name=LTR_AC191802.2_8450	repeat_type=LTRs	sequence=TTATCCCAAACAAGTTGGAGTAGGCTAGATATGAAACCCTTTCACGAGGACTTCCCAAGAGGTCACC
Scaffold13958	Ensembl_Plants	rRNA	7203	7396	.	-	.	ID=gene:ENSRNA049470697	Name=SSU_rRNA_eukarya	biotype=rRNA	description=Eukaryotic small subunit ribosomal RNA	sequence=GTAACACCTCATATCACTTTGCGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGC	Scaffold13958	Ensembl_Plants	LTR/Gypsy	7350	7434	571	+	.	ID=1712240	repeat_name=RLG_Laura_3B_034_D19-1	repeat_type=LTRs	sequence=CATCAGTGTAGCGCGCGTGCGGCCGCAAAGTGATATGAGGTGTTACAGGCTAGATCGGTGTGACTTAGAATCGGGGTCCTGACA
Scaffold1023	Ensembl_Plants	tRNA	44866	44938	.	-	.	ID=gene:ENSRNA049435430	Name=tRNA-Ala	biotype=tRNA	description=tRNA-Ala for anticodon UGC	sequence=GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGCACGGGGTTCGATCCCCCGCATCTCCA	Scaffold1023	Ensembl_Plants	LTR	44853	44950	628	+	.	ID=2240274	repeat_name=LTR_Gm_18_6105	repeat_type=LTRs	sequence=AAGAAAATATGTTGGAGATGCGGGGGATCGAACCCCGTGCCTCTCGCATGCAAAGCGAGCGCTCTACCATTTGAGCTACATCCCCTTTTATGCTTTA
Scaffold59005	Ensembl_Plants	tRNA	58824	58897	.	+	.	ID=gene:ENSRNA049435144	Name=tRNA-Ile	biotype=tRNA	description=tRNA-Ile for anticodon AAU	sequence=GGCCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCTGTATGGGCCA	Scaffold59005	Ensembl_Plants	LTR	58812	58915	716	-	.	ID=2242314	repeat_name=LTR_Al_scaffold_0002_362	repeat_type=LTRs	sequence=AAAAATGTAAAAGATTAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCTTTTTGATATT
Scaffold59005	Ensembl_Plants	tRNA	51142	51215	.	+	.	ID=gene:ENSRNA049435155	Name=tRNA-Ile	biotype=tRNA	description=tRNA-Ile for anticodon AAU	sequence=GGCCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCTGTATGGGCCA	Scaffold59005	Ensembl_Plants	LTR	51139	51237	660	-	.	ID=2242313	repeat_name=LTR_Al_scaffold_0002_362	repeat_type=LTRs	sequence=CAGTGAGTAAAAAAAAACAAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCTT
Scaffold36869	Ensembl_Plants	tRNA	103160	103246	.	-	.	ID=gene:ENSRNA049437667	Name=tRNA-Tyr	biotype=tRNA	description=tRNA-Tyr for anticodon GUA	sequence=CCGACTTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTGTATGCAGATTTGATCCTTAGGTCGCTGGTTCGAATCCGGCAAGTCGGA	Scaffold36869	Ensembl_Plants	LTR	103126	103249	629	+	.	ID=2231891	repeat_name=LTR_Al_scaffold_0001_223	repeat_type=LTRs	sequence=ATATAAAAGAAAAAGAGGAAAAAAAATTCGAAGTCCGACTTGCCGGATTCGAACCAGCGACCTAAGGATCAAATCTGCATACACTACAGTCCTCCGCTCTACCAACTGAGCTAAAGTCGGATT
Scaffold16824	Ensembl_Plants	tRNA	78370	78451	.	-	.	ID=gene:ENSRNA049436394	Name=tRNA-Ser	biotype=tRNA	description=tRNA-Ser for anticodon CGA	sequence=GTCGATATGTCCGAGTGGTTAAGGAGACAGACTCGAAATCTGTTGGGCTTTGCCTGCGCAGGTTCGAATCCTGCTGTCGACG	Scaffold16824	Ensembl_Plants	LTR	78370	78451	375	+	.	ID=2231890	repeat_name=LTR_Al_scaffold_0001_223	repeat_type=LTRs	sequence=GTCGACAGCAGGATTCGAACCTGCGCAGGCAAAGCCCAACAGATTTCGAGTCTGTCTCCTTAACCACTCGGACATATCGAC
Scaffold21507	Ensembl_Plants	tRNA	106403	106484	.	-	.	ID=gene:ENSRNA049436440	Name=tRNA-Ser	biotype=tRNA	description=tRNA-Ser for anticodon UGA	sequence=GTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTACGCCCGCGCAGGTTCGATCCCTGCTGTCGACG	Scaffold21507	Ensembl_Plants	LTR	106398	106504	381	+	.	ID=2231886	repeat_name=LTR_Al_scaffold_0001_223	repeat_type=LTRs	sequence=AAGACGTCGACAGCAGGGATCGAACCTGCGCGGGCGTAGCCCAACAGATTTCAAGTCTGTCTCCTTAACCACTCGGACATATCGACCTTTGGAGATAAAGGATGCT
Scaffold21507	Ensembl_Plants	tRNA	121526	121607	.	-	.	ID=gene:ENSRNA049436456	Name=tRNA-Ser	biotype=tRNA	description=tRNA-Ser for anticodon UGA	sequence=GTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTACGCCCGCGCAGGTTCGATCCCTGCTGTCGACG	Scaffold21507	Ensembl_Plants	LTR	121521	121610	328	+	.	ID=2231888	repeat_name=LTR_Al_scaffold_0001_223	repeat_type=LTRs	sequence=AAAACGTCGACAGCAGGGATCGAACCTGCGCGGGCGTAGCCCAACAGATTTCAAGTCTGTCTCCTTAACCACTCGGACATATCGACATT
Pt	Ensembl_Plants	tRNA	63275	63348	.	-	.	ID=gene:ENSRNA049434086	Name=tRNA-Trp	biotype=tRNA	description=tRNA-Trp for anticodon CCA	sequence=GCGCTCTTAGTTCAGTTCGGTAGAACGCGGGTCTCCAAAACCCGATGTCGTAGGTTCAAATCCTACAGAGCGTG	Pt	Ensembl_Plants	LTR/Copia	63271	63352	719	+	.	ID=2237511	repeat_name=LTR_AC191345.3_7798	repeat_type=LTRs	sequence=AATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGCGTTCTACCGAACTGAACTAAGAGCGCTTTC
Scaffold21507	Ensembl_Plants	tRNA	121380	121461	.	-	.	ID=gene:ENSRNA049436451	Name=tRNA-Ser	biotype=tRNA	description=tRNA-Ser for anticodon UGA	sequence=GTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTACGCCCGCGCAGGTTCGATCCCTGCTGTCGACG	Scaffold21507	Ensembl_Plants	LTR	121375	121465	361	+	.	ID=2231887	repeat_name=LTR_Al_scaffold_0001_223	repeat_type=LTRs	sequence=AAAACGTCGACAGCAGGGATCGAACCTGCGCGGGCGTAGCCCAACAGATTTCAAGTCTGTCTCCTTAACCACTCGGACATATCGACCTTG
Scaffold21507	Ensembl_Plants	tRNA	144328	144409	.	+	.	ID=gene:ENSRNA049436470	Name=tRNA-Ser	biotype=tRNA	description=tRNA-Ser for anticodon UGA	sequence=GTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTACGCCCGCGCAGGTTCGATCCCTGCTGTCGACG	Scaffold21507	Ensembl_Plants	LTR	144327	144414	327	-	.	ID=2231889	repeat_name=LTR_Al_scaffold_0001_223	repeat_type=LTRs	sequence=AAAAACGTCGACAGCAGGGATCGAACCTGCGCGGGCGTAGCCCAACAGATTTCAAGTCTGTCTCCTTAACCACTCGGACATATCGAC
Scaffold18459	Ensembl_Plants	tRNA	107434	107507	.	-	.	ID=gene:ENSRNA049439826	Name=tRNA-Asn	biotype=tRNA	description=tRNA-Asn for anticodon GUU	sequence=GCTGGAATAGCTCAGTTGGCTAGAGCGTGTGGCTGTTAACCGCAAGGTCGGAGGTTCGAGCCCTCCTTCTAGCG	Scaffold18459	Ensembl_Plants	LTR	107427	107507	594	+	.	ID=2206169	repeat_name=LTR_Mt_chr_05_619	repeat_type=LTRs	sequence=GAAAGGCGCTAGAAGGAGGGCTCGAACCTCCGACCTTGCGGTTAACAGCCACACGCTCTAGCCAACTGAGCTATTCCAGC
Scaffold102497	Ensembl_Plants	tRNA	15235	15307	.	+	.	ID=gene:ENSRNA049433799	Name=tRNA-Lys	biotype=tRNA	description=tRNA-Lys for anticodon UUU	sequence=GCCGTCCTAGCTCAGCTGGTAGAGCGCACGGCTTTTAACCGTGTGGTCGTGGGTTCGAATCCCACGGACGGCG	Scaffold102497	Ensembl_Plants	LTR	15232	15312	597	-	.	ID=2240831	repeat_name=LTR_Gm_08_2830	repeat_type=LTRs	sequence=AAAAACGCCGTCCGTGGGATTCGAACCCACGACCACACGGTTAAAAGCCGTGCGCTCTACCAGCTGAGCTAGGACGGCTC
Scaffold167293	Ensembl_Plants	tRNA	23945	24018	.	-	.	ID=gene:ENSRNA049433929	Name=tRNA-Asn	biotype=tRNA	description=tRNA-Asn for anticodon GUU	sequence=GCTGGAATAGCTCAGTTGGCTAGAGCGTGTGGCTGTTAACCACAAGGTCGGAGGTTCGAGCCCTCCTTCTAGCG	Scaffold167293	Ensembl_Plants	LTR	23939	24018	630	+	.	ID=2206170	repeat_name=LTR_Mt_chr_05_619	repeat_type=LTRs	sequence=AAAATCGCTAGAAGGAGGGCTCGAACCTCCGACCTTGTGGTTAACAGCCACACGCTCTAGCCAACTGAGCTATTCCAGC
Scaffold207913	Ensembl_Plants	tRNA	9240	9312	.	-	.	ID=gene:ENSRNA049433769	Name=tRNA-Lys	biotype=tRNA	description=tRNA-Lys for anticodon CUU	sequence=GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCG	Scaffold207913	Ensembl_Plants	LTR	9239	9321	586	-	.	ID=2247420	repeat_name=LTR_AC183412.5_672	repeat_type=LTRs	sequence=ACACAACAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCG
Scaffold268668	Ensembl_Plants	tRNA	14698	14770	.	-	.	ID=gene:ENSRNA049433865	Name=tRNA-Phe	biotype=tRNA	description=tRNA-Phe for anticodon GAA	sequence=GCGGGGATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCA	Scaffold268668	Ensembl_Plants	LTR	14687	14771	658	-	.	ID=2247430	repeat_name=LTR_Mt_chr_05_582	repeat_type=LTRs	sequence=AGCGGGGATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATATTCATTTT
Scaffold268668	Ensembl_Plants	tRNA	2720	2792	.	-	.	ID=gene:ENSRNA049433864	Name=tRNA-Lys	biotype=tRNA	description=tRNA-Lys for anticodon CUU	sequence=GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCG	Scaffold268668	Ensembl_Plants	LTR	2706	2798	585	-	.	ID=2247419	repeat_name=LTR_AC183412.5_672	repeat_type=LTRs	sequence=CACAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAATGAATGTTTTT
Scaffold102941	Ensembl_Plants	tRNA	4307	4379	.	+	.	ID=gene:ENSRNA049433761	Name=tRNA-Lys	biotype=tRNA	description=tRNA-Lys for anticodon CUU	sequence=GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCTTGGGTTCGAGCCCCAAGGTGGGCG	Scaffold102941	Ensembl_Plants	LTR	4307	4397	509	+	.	ID=2247422	repeat_name=LTR_AC183412.5_672	repeat_type=LTRs	sequence=CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCTTGGGTTCGAGCCCCAAGGTGGGCGTTCATTTTTTTTGTATTT
Scaffold222648	Ensembl_Plants	tRNA	4245	4317	.	+	.	ID=gene:ENSRNA049433818	Name=tRNA-Phe	biotype=tRNA	description=tRNA-Phe for anticodon GAA	sequence=GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCA	Scaffold222648	Ensembl_Plants	LTR	4229	4330	760	+	.	ID=2247432	repeat_name=LTR_Mt_chr_05_582	repeat_type=LTRs	sequence=CAAAATTTTCACAAAGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCAATCTCTTTTTCTG
C141555027	Ensembl_Plants	tRNA	1466	1552	.	+	.	ID=gene:ENSRNA049433826	Name=tRNA-Tyr	biotype=tRNA	description=tRNA-Tyr for anticodon GUA	sequence=CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTGGATGCAGATTAAATCCTTAGGTCACTGGTTCGAATCCGGTAGGTCGGA	C141555027	Ensembl_Plants	LTR	1463	1561	666	-	.	ID=2231896	repeat_name=LTR_Al_scaffold_0001_223	repeat_type=LTRs	sequence=AGGGGGAAATCCGACCTACCGGATTCGAACCAGTGACCTAAGGATTTAATCTGCATCCACTACAGTCCTCCGCTCTACCAACTGAGCTAAGGTCGGCT
C141036012	Ensembl_Plants	tRNA	409	482	.	+	.	ID=gene:ENSRNA049433780	Name=tRNA-Ile	biotype=tRNA	description=tRNA-Ile for anticodon UAU	sequence=GGTCTTGTAGCTCAATTGGTTAGAGCGTCGGTCTTATATGCCGCAGGTTGAGGGTTCAAGCCCCTCCGAGACCA	C141036012	Ensembl_Plants	LTR	408	500	259	-	.	ID=2242315	repeat_name=LTR_Al_scaffold_0002_362	repeat_type=LTRs	sequence=TTTTTTTCTAAAAAAAATTGGTCTCGGAGGGGCTTGAACCCTCAACCTGCGGCATATAAGACCGACGCTCTAACCAATTGAGCTACAAGACC
Scaffold85951	Ensembl_Plants	pre_miRNA	5682	5730	.	+	.	ID=gene:ENSRNA049476603	Name=mir-2973	biotype=pre_miRNA	description=mir-2973 microRNA precursor	sequence=GACTGCACGGAGCAAACTGCTGCTTCGTAGCAGTTTGCTCCGTGCAGTC	Scaffold85951	Ensembl_Plants	DNA/En-Spm	5593	6181	1912	-	.	ID=2089962	repeat_name=DTC_Caspar_3B_091_N08-1	repeat_type=Type II Transposons	sequence=AAGGGTCAAATGTGAAGCACATTAGTCCTGGTTTGTAACAGAACCGGCACTAATCTGATCAATAGTACCGGTTCGTGACGGAGATCAATACTACCGGTTCGTGGAGAACCTTTAGTACCAGTTCATGCCACGAACCAGTACTAAAGGGGCGGTGGCAGGCTGGCGTCAGGTCGGGGTCCACCGAGCCCCTTTAGACCCGGTTTGTGGCACAAACCGGTACTAAAGGGCTAACCTTTAGTACAGATTCGTGCACCGGTACTAAAGATGCTGTGGCCCCACCTGCACCTTCAGTACCGGTTCGTGGCATTCCTTTTCCAGCTGCTTTTAGTTCCACCTCGCCAAGCGAGAGGCACTCCCAGCGGTTTATAAGTCCTAAGTGTATAGATGATGAAGGAGAGGCGCAATGCTCACTTACACGTTGTTTAGCTTCAGGCCTTGAGGAAGTAGTGTAGACTGCACGGAGCAAACTGCTACGAAGCAGCAGTTTGCTCCGTGCAGTCTACACTACTTCCTCAAGGCCTGAAGATAAGCAACATGCATGTTAGCATTACACCTTTTAATAACTTATATTAACTCCAGACTTTTTGT
Scaffold193219	Ensembl_Plants	SRP_RNA	581	797	.	-	.	ID=gene:ENSRNA049478897	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=CCTTGAGATCTTAGCGAAGCTAGGACGTGGATCGGTAGGGGGAGATCTTCGTGAAGACCCGAGTGTTCGAACCTTGAGGGTTTTGCCGGAACCCGTGATCCGACATTTGGCCCTGCATCGGCCTCCCCTACCTGGCGCGCCAATTGTTGGATCACGGGTTCCGGCAAAACCCTCACGGTTCGAACACTGGGGTGCACACAAAGATCTCCCCCTGCTG	Scaffold193219	Ensembl_Plants	LTR	5	683	4398	-	.	ID=913568	repeat_name=LTR_AC207921.1_126	repeat_type=LTRs	sequence=GCATCGGCCTCCCCTACCTGGCGCGCCAATTGTTGGATCACGGGTTCCGGCAAAACCCTCACGGTTCGAACACTGGGGTGCACACAAAGATCTCCCCCTGCTGATCCACGTCCTAGCTTCGCTAAGATCTCAAGGGCTAACTCGACGAACTCGAACACAAGGGATACAAGATTTATACTGGTTCGGGCCACAGTTGTGGTGTAATACCCTACTCCAGTGTGGTGGTGGTGGATTGCCTCGGGCTGAGGATGAACAGTGCAAGGGGAAGAACAACCTCCTGAGGCGAGGTGTTCTTGTGCTTGGTGGGTGTGAGGATGAACTAAATGAGTTCGAGACCCGTTCGAGACTAGTTGCGTCCTACTGTGGTGGTTAATCCTATTTATAGAGGCCCTGGTCCTCTCCCCAAATATTGAGCAGGAAGGGAGCCAACAACGGCCAATTTGAAAGGGGACAGCTAGTACAGCTTATCATGGCAAAAGCAGTCTTCGCCTGCAAAAAGCTCTGGTGGTGACGCCAACTTGGGCTCCATGGTGACCTCCGTCTTGCCGTCCTGCTGGTCTTTGTCTCGTTGCACTGATATGGAAACCTTTGCTTGACGCCTCAGTACTCCGCGCCTGCGTTTGCTTCCTTAGCACCAAAGAGGAAACAAGGACACTGTGCGCGCTGGCGCCCGCCTGA
Scaffold193219	Ensembl_Plants	SRP_RNA	581	797	.	-	.	ID=gene:ENSRNA049478897	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=CCTTGAGATCTTAGCGAAGCTAGGACGTGGATCGGTAGGGGGAGATCTTCGTGAAGACCCGAGTGTTCGAACCTTGAGGGTTTTGCCGGAACCCGTGATCCGACATTTGGCCCTGCATCGGCCTCCCCTACCTGGCGCGCCAATTGTTGGATCACGGGTTCCGGCAAAACCCTCACGGTTCGAACACTGGGGTGCACACAAAGATCTCCCCCTGCTG	Scaffold193219	Ensembl_Plants	LTR/Gypsy	687	941	1309	-	.	ID=917709	repeat_name=trep2318	repeat_type=LTRs	sequence=TTCCACCAAAGCGATATCCATCATCTCATCGAAAGACGGGACACCTTTGCCTCTATCAACACTGGAGTAGGGTATTACACCACAACGGTGGCCCGAACCAGTATAAATCTTGCGTCCGCTGTGTTGCGAGTTCGTCGAGTTAGACCTTGAGATCTTAGCGAAGCTAGGACGTGGATCGGTAGGGGGAGATCTTCGTGAAGACCCGAGTGTTCGAACCTTGAGGGTTTTGCCGGAACCCGTGATCCGACATTTGG
Scaffold193219	Ensembl_Plants	SRP_RNA	581	797	.	-	.	ID=gene:ENSRNA049478897	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=CCTTGAGATCTTAGCGAAGCTAGGACGTGGATCGGTAGGGGGAGATCTTCGTGAAGACCCGAGTGTTCGAACCTTGAGGGTTTTGCCGGAACCCGTGATCCGACATTTGGCCCTGCATCGGCCTCCCCTACCTGGCGCGCCAATTGTTGGATCACGGGTTCCGGCAAAACCCTCACGGTTCGAACACTGGGGTGCACACAAAGATCTCCCCCTGCTG	Scaffold193219	Ensembl_Plants	LTR	681	733	237	-	.	ID=2197654	repeat_name=LTR_HVVMRX83KhA0043C24_v72_c1_119	repeat_type=LTRs	sequence=GTTCGAACCTTGAGGGTTTTGCCGGAACCCGTGATCCGACATTTGGCCCTGC
Scaffold9090	Ensembl_Plants	SRP_RNA	13583	13873	.	-	.	ID=gene:ENSRNA049478094	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTCACGAGAGCTTGTGACCCATGTGGGGGCATCAAGGTGGTGTGGATGATTGGTGCGTATTCTCGGCCTGGGCCTGTGGAGTGACTTTGCCGGCTTGCCCGTTCCAAGTTGGTAGTGGGCTGGGTGGCTGGGGCGAAAGCCTCGGCCTCTCAGGCCCTGAAGCGGCAGGCACCACGTTAGGCTGGTTTCACAGAGCAGCGTTTACTGCCGGAAGGATAACAGGCCGCTGCACCATGGGTCCACTCTGGCCTAGGACCCCTCCATAACAGGCCCCCATCTTT	Scaffold9090	Ensembl_Plants	LTR	13581	13934	611	+	.	ID=2235167	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AAAAGATGGGGGCCTGTTATGGAGGGGTCCTAGGCCAGAGTGGACCCATGGTGCAGCGGCCTGTTATCCTTCCGGCAGTAAACGCTGCTCTGTGAAACCAGCCTAACGTGGTGCCTGCCGCTTCAGGGCCTGAGAGGCCGAGGCTTTCGCCCCAGCCACCCAGCCCACTACCAACTTGGAACGGGCAAGCCGGCAAAGTCACTCCACAGGCCCAGGCCGAGAATACGCACCAATCATCCACACCACCTTGATGCCCCCACATGGGTCACAAGCTCTCGTGACTGAGCTCGGCGATTCTAGCGCTCCAGCCGAGTATTTAAGCTGGTGTTTCTCTTTGTAAACTAGCGAGGTGG
Scaffold270101	Ensembl_Plants	SRP_RNA	603	906	.	+	.	ID=gene:ENSRNA049473304	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACGAGAGCTTGTAACCTGAGTGGGGGCATTAAAGTGATGTGGACGCTGTTGTAGCGCTGCGGGCCTGGTCTGGGTGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGCGTAGTGGACCGCCTGGGGCCTATGCGAAAGCTGGGCCTCACGACCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTTGGCTGCTTGGGCCTCGCAGCCTACTCCAACGAACCATCACTTTT	Scaffold270101	Ensembl_Plants	DNA/En-Spm	534	611	250	+	.	ID=1505806	repeat_name=DTC_Clifford_3B_005_B23-1	repeat_type=Type II Transposons	sequence=TTAGTCCCACCTCGCTAACCGAGGAGACGTTCCACCGACTTAAATACCCGGCTCCACTCTCTTCACTCGCCGAGCTC
Scaffold270101	Ensembl_Plants	SRP_RNA	603	906	.	+	.	ID=gene:ENSRNA049473304	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACGAGAGCTTGTAACCTGAGTGGGGGCATTAAAGTGATGTGGACGCTGTTGTAGCGCTGCGGGCCTGGTCTGGGTGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGCGTAGTGGACCGCCTGGGGCCTATGCGAAAGCTGGGCCTCACGACCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTTGGCTGCTTGGGCCTCGCAGCCTACTCCAACGAACCATCACTTTT	Scaffold270101	Ensembl_Plants	LTR	567	853	826	-	.	ID=2235171	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCCACATTATGGGTCGTGAGGCCCAGCTTTCGCATAGGCCCCAGGCGGTCCACTACGCAACTTGGAACGGGCGGGCCAGCAGTAGCACACCCAGACCAGGCCCGCAGCGCTACAACAGCGTCCACATCACTTTAATGCCCCCACTCAGGTTACAAGCTCTCGTAACTGAGCTCGGCGAGTGAAGAGAGTGGAGCCGGGTATTTAAGTCGGT
Scaffold270101	Ensembl_Plants	SRP_RNA	603	906	.	+	.	ID=gene:ENSRNA049473304	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACGAGAGCTTGTAACCTGAGTGGGGGCATTAAAGTGATGTGGACGCTGTTGTAGCGCTGCGGGCCTGGTCTGGGTGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGCGTAGTGGACCGCCTGGGGCCTATGCGAAAGCTGGGCCTCACGACCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTTGGCTGCTTGGGCCTCGCAGCCTACTCCAACGAACCATCACTTTT	Scaffold270101	Ensembl_Plants	LTR/Copia	746	922	352	+	.	ID=2250894	repeat_name=ARSiTERT00100011	repeat_type=LTRs	sequence=CGAAAGCTGGGCCTCACGACCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTTGGCTGCTTGGGCCTCGCAGCCTACTCCAACGAACCATCACTTTTTTCTTTATACTCTTTT
Scaffold9744	Ensembl_Plants	SRP_RNA	1886	2189	.	-	.	ID=gene:ENSRNA049471955	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACCAGAGCTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGACGCTGTTGTAGCGCTGCGGGCCTAGTCTGGGAGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGCGTAGTGGGCCGCTTGGGGCCTATGCAAAAGCGGGGCCTCATGGTCCATATTGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCTGCTTCCAACGGTGGAAGGATAACGAGCCGCTCCACTCCTTGGCCACTTGGGCCTCGCAGCCTACTCCAACGGACCATCACTTTT	Scaffold9744	Ensembl_Plants	DNA/En-Spm	2181	2258	251	+	.	ID=1755693	repeat_name=trep1802	repeat_type=Type II Transposons	sequence=AGCTCGGCGAGTGAAGAGAGTGGACACGGCTATTTAAGCTGGTCGAATGCCTCCTCAGTTAGCGAGGTGGGACTAAA
Scaffold9744	Ensembl_Plants	SRP_RNA	1886	2189	.	-	.	ID=gene:ENSRNA049471955	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACCAGAGCTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGACGCTGTTGTAGCGCTGCGGGCCTAGTCTGGGAGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGCGTAGTGGGCCGCTTGGGGCCTATGCAAAAGCGGGGCCTCATGGTCCATATTGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCTGCTTCCAACGGTGGAAGGATAACGAGCCGCTCCACTCCTTGGCCACTTGGGCCTCGCAGCCTACTCCAACGGACCATCACTTTT	Scaffold9744	Ensembl_Plants	LTR	1886	2224	889	+	.	ID=2235160	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AAAGTGATGGTCCGTTGGAGTAGGCTGCGAGGCCCAAGTGGCCAAGGAGTGGAGCGGCTCGTTATCCTTCCACCGTTGGAAGCAGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCCACAATATGGACCATGAGGCCCCGCTTTTGCATAGGCCCCAAGCGGCCCACTACGCAACTTGGAACGGGCGGGCCAGCAGTAGCACTCCCAGACTAGGCCCGCAGCGCTACAACAGCGTCCACATCACCTTAATGCCCCCACTCGGGTTACAAGCTCTGGTAACTGAGCTCGGCGAGTGAAGAGAGTGGACACGGCTATTTAAGCTGGT
Scaffold9744	Ensembl_Plants	SRP_RNA	11850	12274	.	-	.	ID=gene:ENSRNA049471949	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGATGCTGTTGTAGAGTTGCGGGCCTGGTTTGGGTGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGAGTAGTGGACCGCTTGGGGCCTATGCGAAAGCTGGGCCTCACGATCCATAATGTGGCAGGCACAGCGGGGGGGTGGCTTCCCCGAGCAGCGACCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCGGGGCCTCACGATCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTTGGCCGCTTGGGCCTCGCAGCCTATTCCAGCGAACCATCATTTTT	Scaffold9744	Ensembl_Plants	DNA/En-Spm	12266	12344	257	+	.	ID=1755695	repeat_name=trep1802	repeat_type=Type II Transposons	sequence=AGCTCGGCGAATGAAGCAGATGGAGACTGCTATTTAAGCTGGTCCAATGGGTCCTCGGTTGGCGAGGTGGGACTAAAC
Scaffold9744	Ensembl_Plants	SRP_RNA	11850	12274	.	-	.	ID=gene:ENSRNA049471949	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGATGCTGTTGTAGAGTTGCGGGCCTGGTTTGGGTGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGAGTAGTGGACCGCTTGGGGCCTATGCGAAAGCTGGGCCTCACGATCCATAATGTGGCAGGCACAGCGGGGGGGTGGCTTCCCCGAGCAGCGACCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCGGGGCCTCACGATCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTTGGCCGCTTGGGCCTCGCAGCCTATTCCAGCGAACCATCATTTTT	Scaffold9744	Ensembl_Plants	LTR	11842	11986	507	+	.	ID=2235164	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AAAGGAAAAAAATGATGGTTCGCTGGAATAGGCTGCGAGGCCCAAGCGGCCAAGGAGTGCAGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCCACATTA
Scaffold9744	Ensembl_Plants	SRP_RNA	11850	12274	.	-	.	ID=gene:ENSRNA049471949	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGATGCTGTTGTAGAGTTGCGGGCCTGGTTTGGGTGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGAGTAGTGGACCGCTTGGGGCCTATGCGAAAGCTGGGCCTCACGATCCATAATGTGGCAGGCACAGCGGGGGGGTGGCTTCCCCGAGCAGCGACCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCGGGGCCTCACGATCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTTGGCCGCTTGGGCCTCGCAGCCTATTCCAGCGAACCATCATTTTT	Scaffold9744	Ensembl_Plants	LTR	12064	12309	667	+	.	ID=2235165	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=CGCTGCTCGGGGAAGCCACCCCCCCGCTGTGCCTGCCACATTATGGATCGTGAGGCCCAGCTTTCGCATAGGCCCCAAGCGGTCCACTACTCAACTTGGAACGGGCGGGCCAGCAGTAGCACACCCAAACCAGGCCCGCAACTCTACAACAGCATCCACATCACCTTAATGCCCCCACTCGGGTTACAAGCTCTCGCAACTGAGCTCGGCGAATGAAGCAGATGGAGACTGCTATTTAAGCTGGT
Scaffold9744	Ensembl_Plants	SRP_RNA	5278	5551	.	-	.	ID=gene:ENSRNA049471941	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACGAGAGTTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGACGCTGTTGTAGCGCTGCGGGCCTGGTCTAGGTGTGCTACTGCTGGCCCGCCCATTCCAAGTTGCGTAGTGGATCGCCTGGGGCCTATGCGAAAGCTGGGCCTCACGGTCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCTGCTTCCAACGGTGGAAGGATAACGAGCCGCTCCACTCCTTAGACACTTGGGCTG	Scaffold9744	Ensembl_Plants	DNA/En-Spm	5543	5620	262	+	.	ID=1755694	repeat_name=trep1802	repeat_type=Type II Transposons	sequence=AGCTCGGCGAGTGAAGAGAGTGAAGACGCGTATTTAAGCTGGTCGAACGTCTTCTCGGTTGGCGAGGTGGGACTAAA
Scaffold9744	Ensembl_Plants	SRP_RNA	5278	5551	.	-	.	ID=gene:ENSRNA049471941	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACGAGAGTTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGACGCTGTTGTAGCGCTGCGGGCCTGGTCTAGGTGTGCTACTGCTGGCCCGCCCATTCCAAGTTGCGTAGTGGATCGCCTGGGGCCTATGCGAAAGCTGGGCCTCACGGTCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCTGCTTCCAACGGTGGAAGGATAACGAGCCGCTCCACTCCTTAGACACTTGGGCTG	Scaffold9744	Ensembl_Plants	LTR	5301	5586	1037	+	.	ID=2235162	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=GCGGCTCGTTATCCTTCCACCGTTGGAAGCAGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCCACATTATGGACCGTGAGGCCCAGCTTTCGCATAGGCCCCAGGCGATCCACTACGCAACTTGGAATGGGCGGGCCAGCAGTAGCACACCTAGACCAGGCCCGCAGCGCTACAACAGCGTCCACATCACCTTAATGCCCCCACTCGGGTTACAAACTCTCGTAACTGAGCTCGGCGAGTGAAGAGAGTGAAGACGCGTATTTAAGCTGGT
Scaffold1191	Ensembl_Plants	SRP_RNA	90490	90721	.	-	.	ID=gene:ENSRNA049469728	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=ACCGAACTTTCGGTGTTTTCGATGGTGAAGATGTTGATGGAGATTGCCCTCCCCAAGATGGGAGAGTTGTTGGTGATGATGATGACGATGATTTCCCCCTCCGGGAGGGAAGTTCCCCTAGCAGAATCGCTCCGCTTGAGGGCAGGAGTCCCTCCCGGAGGGGGAAATCATAGTCATCATCATCACCAACAACTCTCCCATCTTGGGGAGGGCAATCTCCATCAACATCTTC	Scaffold1191	Ensembl_Plants	LTR/Gypsy	90578	90696	950	+	.	ID=978953	repeat_name=RLG_Wilma_3B_023_N15-1	repeat_type=LTRs	sequence=GCCCTCAAGCGGAGCGATTCTGCTAGGGGAACTTCCCTCCCGGAGGGGGAAATCATCGTCATCATCATCACCAACAACTCTCCCATCTTGGGGAGGGCAATCTCCATCAACATCTTCA
Scaffold1191	Ensembl_Plants	SRP_RNA	90490	90721	.	-	.	ID=gene:ENSRNA049469728	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=ACCGAACTTTCGGTGTTTTCGATGGTGAAGATGTTGATGGAGATTGCCCTCCCCAAGATGGGAGAGTTGTTGGTGATGATGATGACGATGATTTCCCCCTCCGGGAGGGAAGTTCCCCTAGCAGAATCGCTCCGCTTGAGGGCAGGAGTCCCTCCCGGAGGGGGAAATCATAGTCATCATCATCACCAACAACTCTCCCATCTTGGGGAGGGCAATCTCCATCAACATCTTC	Scaffold1191	Ensembl_Plants	LTR/Gypsy	90298	90609	2099	-	.	ID=981228	repeat_name=RLG_Wilma_3B_016_K12-1	repeat_type=LTRs	sequence=TTCCCCTAGCAGAATCGCTCCGCTTGAGGGCAGGAGTCCCTCCCGGAGGGGGAAATCATAGTCATCATCATCACCAACAACTCTCCCATCTTGGGGAGGGCAATCTCCATCAACATCTTCACCAGCACCATCTCATCTCAAACCCTAGTTCATCTCTTGTATTCAATCTTGTTACCGGAACTATAGATTGTCGCTAGGGGGTGACTAGTAGTGTTGATTACATCTTATAGTTGCTTACTATATGGTTTATTTGGTGGAAGATTATATGTTCAGATCCATTATGCTATTTAATACCCCTCTGATCTTGAGCA
Scaffold23008	Ensembl_Plants	SRP_RNA	37181	37482	.	+	.	ID=gene:ENSRNA049457670	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTCACGCGAGCTTGTAACCTGAGTGGGGGCTTTAAGGTGGTGTGGACGCTGTTGCAGCGTTGTGGGCCTGGTTTGGATGTGCAATTGCTGGCCCGCCGTTCCAAGTTGAGTAGTGGACTGCTGGGGCCTATGCGAAAGCTGGGCCTCACGGGCCATGATGTGGCAGGGAAAGCGTGAGGCTGGTTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCTGCTGCACATCTGGGCCTGTTGGGCCTCACAGCCTGCTCCATCGAACCACCATTTTT	Scaffold23008	Ensembl_Plants	DNA/En-Spm	37111	37189	228	-	.	ID=355154	repeat_name=DTC_Clifford_3B_080_N22-1	repeat_type=Type II Transposons	sequence=GAGCTCGGCGAGATGGGAGGTGGAGCTGGGTATTTAAGCCGGTCAAACGCTCCCTCGCTAGGCGAGGTGGGACTAAAC
Scaffold98975	Ensembl_Plants	SRP_RNA	5277	5580	.	-	.	ID=gene:ENSRNA049450826	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTCACGAGAGCTTGTGACCCATGTGGGGGCATCAAGGTGGTGTGGATGTTTGGTGCGGATTCTCGGCCTGGGCCTGTGGTGTGACTTTGCCGGCTTGCCCGTTCCAAGTTGGTAGTGGGCTGGGTGGCTTGGGCGAAAGCCTCGGCCTCTCAGGCCCTGAAGCGGCAGGCACCACGTTAGGCTGGTTTCACAGAGCAGCGTTTACTGCCCGCTTCCAACGGTGGAAGGATAACTGGCCGCTGCACCATGGGCCCACTCTGGCCTAGGGTCCCTACATGACAGACCACCATTTTT	Scaffold98975	Ensembl_Plants	LTR	5275	5581	745	+	.	ID=2235168	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AAAAAATGGTGGTCTGTCATGTAGGGACCCTAGGCCAGAGTGGGCCCATGGTGCAGCGGCCAGTTATCCTTCCACCGTTGGAAGCGGGCAGTAAACGCTGCTCTGTGAAACCAGCCTAACGTGGTGCCTGCCGCTTCAGGGCCTGAGAGGCCGAGGCTTTCGCCCAAGCCACCCAGCCCACTACCAACTTGGAACGGGCAAGCCGGCAAAGTCACACCACAGGCCCAGGCCGAGAATCCGCACCAAACATCCACACCACCTTGATGCCCCCACATGGGTCACAAGCTCTCGTGACTGAGCTCGGCG
Scaffold27994	Ensembl_Plants	SRP_RNA	4374	4671	.	+	.	ID=gene:ENSRNA049450526	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTGCGAGAGCTTGTAACCTGAGTAGGGGTATTAAGGTGATGTGGACGGTGTTGTAACGTTGTGGGCTTGGTCTGGGTGTGCTACTGCTGGCCCGCCCGTTTCAAGTTGCGTAGTGGACCGCTTGGGGCCTATGCGAAAGCTGGGCCTCACGGTCCATAATATGGTAGGTACAGCGTGAGGCTGGCTTCACAGGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTGGGCCACTTGGGCCTCGCAGCCTACTCCAGCGAACCATCACTTTT	Scaffold27994	Ensembl_Plants	DNA/CMC-EnSpm	4305	4382	248	-	.	ID=176627	repeat_name=EnSpm-4_HV	repeat_type=Type II Transposons	sequence=GAGCTCGGCGAGTGAAGTGAGCGAAGACGGATATTTAAGCTGGTCGAGCGCCTCTTCGGTTGGCGAGGTGGGACTAA
C141470882	Ensembl_Plants	SRP_RNA	1509	1811	.	+	.	ID=gene:ENSRNA049448647	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTTAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGACGTTGTTGTAGCGCTGCGGGCCTGGCCTGGGTGTGCTACTGCTAGCCCGCCCATTCCAAGTTGCGTAGTGGACCGGCTGGGGGGCCTATGCGAAAGCTGGGCCTCATGGTCCATAATGTGGGAAAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGATGGAAGGATAAGCCTACTCCAGCGAACCATCACTTTTTTTTGCTGCACTTCAGAGGTTGATTTGCTTACTCTTT	C141470882	Ensembl_Plants	DNA/En-Spm	1499	1517	233	+	.	ID=1086092	repeat_name=trep28	repeat_type=Type II Transposons	sequence=TCTCCACTCGCCGAGCTT
C141470882	Ensembl_Plants	SRP_RNA	1509	1811	.	+	.	ID=gene:ENSRNA049448647	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTTAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAGGTGATGTGGACGTTGTTGTAGCGCTGCGGGCCTGGCCTGGGTGTGCTACTGCTAGCCCGCCCATTCCAAGTTGCGTAGTGGACCGGCTGGGGGGCCTATGCGAAAGCTGGGCCTCATGGTCCATAATGTGGGAAAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGATGGAAGGATAAGCCTACTCCAGCGAACCATCACTTTTTTTTGCTGCACTTCAGAGGTTGATTTGCTTACTCTTT	C141470882	Ensembl_Plants	LTR	1474	1748	788	-	.	ID=2235170	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=TTATCCTTCCATCGTTGGAAGCGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTTTCCCACATTATGGACCATGAGGCCCAGCTTTCGCATAGGCCCCCCAGCCGGTCCACTACGCAACTTGGAATGGGCGGGCTAGCAGTAGCACACCCAGGCCAGGCCCGCAGCGCTACAACAACGTCCACATCACCTTAATGCCCCCACTCGGGTTACAAGCTCTCGCAACTAAGCTCGGCGAGTGGAGAGAGTGGAGACCGGTATTTAAGCTGG
Scaffold23844	Ensembl_Plants	SRP_RNA	1788	1905	.	+	.	ID=gene:ENSRNA049479287	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCAAGAGTCACCCGAGGGGGGCACCTGGGTGGGGACAACCCACCAGGGCGCGCCCGGATCCTAAGAATGCTAACCACAACCCACCAGGGCGCGCCTAGGTGGGTTGTCCCCACCTAG	Scaffold23844	Ensembl_Plants	LTR/Gypsy	1584	5012	23971	+	.	ID=1300104	repeat_name=RLG_WHAM_3B_053_M11-2	repeat_type=LTRs	sequence=GATACGTCTTCAACGTATCCACTTTTCCTAAGGCTTTTCCTCTTGTTTTGGACTCTAATTTGCATGATTTGAATGAAACTAACCCGGACTGACGCTGTTTTCAGCAGAACTACCATGGTGTTGTTTTTGCGTAGAAATAAAAGTTCTCGGAATGGAACGAAACTTTGCGAGGATTTTTTATACCAATAAAGAGAATTTCTAGAGCCAAGAGTCACCCGAGGGGGGCACCTGGGTGGGGACAACCCACCAGGGCGCGCCCGGATCCTAAGAATGCTAACCACAACCCACCAGGGCGCGCCTAGGTGGGTTGTCCCCACCTAGTGGCCCCGTAGACCCTGAAACCGACGCTATAAAATCCTATTTTTCCGAAAAAAACTAGGGAGAAAGAATTATCACGATCCACGAGACGGAGCCGCCGTCACCTCCTGTTCTTCATTAGGAGGCCAGATCTGGAGTCCGTTTGGTGCTCCGGAGAGGAGGATCTTCGTTCTTCATCATCACCAACCCTTCTCCATCGCCAATTCCATGATGCTCCCCACCGGGAGTGAGTAATTCCTTCGTAGGCTCGCTGGTCGGTGAGGAGTTGGATGAGATTAATCATGTAATCGAGTTAGTTTTGTTAGGGCTTGATCCCTAGTATCGACTATGTTCTGAGATTGATGTTGCTATGACTTTGCTATGCTTAATGCTTGTCACTTTGGGCCCGGGTGCCATGATTTCAGACCTGAACCGTTTATGTTATCACCATTATATCCATGTTCTAGATCCGATCTTGCAAGTTATAGTCACCTACTACGTGTTATGATCCTTAACCCCAGAGTGACAATAGTCGGGACCACTCCCAGTGATGACCGTAGTTTGAGGAGTTCATGTATTCACCGTGGTGTTAATGCTTTGTTCCGGTTCTCTATTAAAAGGAGGCCTTAATATCCCTTAGTTTCCAATTGGACCCCGCTGCCACGGGAGGGTAGGACAAAAGATGTCATGCAAGTTCTTTCCATAAGCACGAATGACTATTTACGGAATACATGCCTACATTATATTTATGAACTGGAGCTAGTGTCGTACCGTCCTAGGTAATTGTCACACGATGAATATCATCCAACAAATTACCGATCCAATGCCTACGAATTTATCCTATATTGTTCTGGCTAAGTTACTACTGCTATCATTACTATTGCACTTGCTACAAAACTACTGCTATCACTGTTACCGTTACTATTGTTGCTACTATTATGAAAACTATCATATTACTTTGCTACTGATCACTTTGCTGCAGATAATTAATCTCCAGGTGTGATTGGATTGACAACTCGGTTGCTAATACTTACAAATATTCTTTGGCGCCCCTTGTGTCCAATCTATAAATTTGGGTTTAATACTCTACCCTCGAAAACTGTTGCGATCCCCTATACTTGTGGGTTATCAAGACCTTTTTCTGGCGCCATAGCCGGGGAGCATAGCTATATTTATTGAGTCACTTGGGATTATTATCAATTTATCACGATGAAGAATCTGAAGGATGCTAAGACCAAGATATTTCCCTCTAAGACGAGGGGAGGTAAGGAACTGCCATCTAGCTCTGCTTTAGATTCACCTGCTGTTATAAGTAAACTTGCAACAGCACCACATGCTATTAATCCTGACATGTCGCAAGTTATTGATGATGCTACTTCTGCTATGAATGATACTTATGATGATGCTAGTACCTTGCTTGATGATAATGATGTGTCACTTGGTGATTTTCTTGATGAACAAATTGCTAGAGTAAGACAACATGATATTGTTGAATCTGATGATGAGCTTGAAACTGAAAATCTTGAAACACCTACTAGAACTAGCCCTCCTAGATATGAATTGCCTAAGGTACCGGAAGGCTATGTTATGAATGAGGAGACAACTAGAGACATTCTTGCTTGTAAGGATAGAGATGATCTAGAGAAATTATTATGCAAGTATAAAGAAAAATCTCTAAATGCTAGAATGCAATATGATCCTAAGTCTTTCACCTATCTTTATTGATGGTAAGGATTATGAATTCACTGTCGACCCAGAGTTAATTACTTTGGTTGAATCTGATCCTTTCCATGGTTATGAAACTGAAACTGTTGTGGCACATCTTACTAAATTGAATGATATAGCCACCCTATTTACTCGTGAGGAAAAAAAATCGTTACTACTATATCCTTAAGTTATTTCCGTTCTCATTAAAGGGTGATGCTAATGCTTGGTACAATACTCTTGCTCCTGGTTGTGTGCGTAGTCCCCAGGATATGATTTATTACTTCTCTGAAAAATATTTCCCTACTCATAAGAAACAAGCTGCCTTGCAGGAAATATTTAACTTTGTGCAAATTAAAGAAGAGAGTCTCCCACAAGCTTGGGGGAGGCTTCTCAAGTTACTTAATGCTTTGCCTGATCATCCTCTTAAGAAAAATGAAATACTTGATATCTTCTATAATGGACTAACCAATGCTTCTAGGGATTTCCTAGATAGTTGTGCTGGTTGTGTTTTCAGGGAACGAACTATTGGGCAAGCTGAAGAATTATTGAATAACACATTGAAAAATTATGATGCGTGGACTCTTCCTGAGCCACCGCCTAAACCCACTCCGAAGAAGAGGGGTATATTATATATTAGTCCTGAAGATATGCAAGAGGCAAAGAAATCCATGAAGGAAAAAGGTATTAAGGCTGAGGATGTCAAAAATTTACCTCCTATTAAAGAAATACATGGGCTTGATACACCACCACTGCCTAAGGTGGTAGAGGTAAATTCTTTAATGCAATTCAATGATAATGACAATCCTCACAATATGCACCCTAGCCAATGCCTTTATGAGTTTGAAAACTACATTAGAAAACAAGATCCCTTCAATGCAAATTTTATGAAACAATTGAAATACAACTCTGATATGATTGCTCGCTTGAGTGACTTGTTATTTAGAATCTCAAATGATGTTAGAGGTGTTGGAAAACATGCTTCTGTGGTTCAAACCCGGCTAGAACAAGTTGCTAAATCTCAAAGAGAGTTGCTAGATAAAATGAACAATAACACACATGACTTTGCTGTTAGAGTAGCAACTAGAGGAGGTAAAATGACTCAGGAACCACTTTATCCTGAGGGACACCCAAAAAGAATTGAACAAGACTCTCAAAGAGTTAACACTGATGCACGTAGTCCTAAAATGAAAAAGAAGAAGAAAAATGATAGCACTTTGCATCCTTCTAGTGAACCTGAAGTAGAAAAACCTACTGATAATGACAATGAAGTTTCTATCTCTGATGCTGAAACTCAATCCGGTAGTGAACACTCACCTTCTGATAATGAAAAAGATAATGATGAGGTTCATGAATACACTCAAACAAATAATAAAGAACTAGACGATGATGTTGAGATAGAACCACCAGTTGATCTTGATAACCCA
Scaffold9744	Ensembl_Plants	SRP_RNA	9442	9745	.	-	.	ID=gene:ENSRNA049471961	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACGAGAGCTTGTAACCCGAGTGGGGGCATTAAAGTGATGTGAACGCTGTTGTAGCGCTGCGGGCCTGGTCTGGGTGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGCGTAGTGGACCGCCTGGGGCTTATGCGAAAGCTGGGTCTCACGGTCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAATGGGCCGCTGCACTCCTAGGCCAATTGGGCCTCGCAGCCTACTCCAACGGACCATCACTTTT	Scaffold9744	Ensembl_Plants	DNA/En-Spm	9737	9814	244	-	.	ID=1503974	repeat_name=DTC_Clifford_3B_005_B23-1	repeat_type=Type II Transposons	sequence=TTTAATCCCACCTCGCTAACCGAGGAGGCGTTCGACCGACTTAAATATCCGGCTCCACTCTCTTCACTCGCCGAGCT
Scaffold9744	Ensembl_Plants	SRP_RNA	9442	9745	.	-	.	ID=gene:ENSRNA049471961	Name=Plant_SRP	biotype=SRP_RNA	description=Plant signal recognition particle RNA	sequence=GCCGAGCTCAGTTACGAGAGCTTGTAACCCGAGTGGGGGCATTAAAGTGATGTGAACGCTGTTGTAGCGCTGCGGGCCTGGTCTGGGTGTGCTACTGCTGGCCCGCCCGTTCCAAGTTGCGTAGTGGACCGCCTGGGGCTTATGCGAAAGCTGGGTCTCACGGTCCATAATGTGGCAGGCACAGCGTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAATGGGCCGCTGCACTCCTAGGCCAATTGGGCCTCGCAGCCTACTCCAACGGACCATCACTTTT	Scaffold9744	Ensembl_Plants	LTR	9442	9755	931	+	.	ID=2235163	repeat_name=LTR_AC198290.2_10424	repeat_type=LTRs	sequence=AAAGTGATGGTCCGTTGGAGTAGGCTGCGAGGCCCAATTGGCCTAGGAGTGCAGCGGCCCATTATCCTTCCACCGTTGGAAGCGGGCAGTTGTCGCTGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCCACATTATGGACCGTGAGACCCAGCTTTCGCATAAGCCCCAGGCGGTCCACTACGCAACTTGGAACGGGCGGGCCAGCAGTAGCACACCCAGACCAGGCCCGCAGCGCTACAACAGCGTTCACATCACTTTAATGCCCCCACTCGGGTTACAAGCTCTCGTAACTGAGCTCGGCGAGTGAAGAG
Scaffold35921	Ensembl_Plants	snoRNA	35159	35401	.	-	.	ID=gene:ENSRNA049462998	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=ACGACCTTACTTGAACAGGATTTGTTCTATAGGCTTGTACTGCTGCATCCTTTACCAATAAGGAGGCAAGCACTTCAGTCTGGTTGATGCATTCTAACCTCTGGGCCAGAGCGTGATTAACGGCTTGGATTCATTCTCAAGGAAGCAAAAATTCAAGGCTAATGATTTCTTCGGCGAGCACGTATTCTTCACTGATTACAACCCCTATGACTCTGCTCGCATTAGGAGAGGCGTTTCTGGACT	Scaffold35921	Ensembl_Plants	LTR	34609	35275	5458	-	.	ID=758430	repeat_name=LTR_AC207944.1_149	repeat_type=LTRs	sequence=GGATTCATTCTCAAGGAAGCAAAAATTCAAGGCTAATGATTTCTTCGGCGAGCACGTATTCTTCACTGATTACAACCCCTATGACTCTGCTCGCATTAGGAGAGGCGTTTCTGGACTGCCAGCCAGGCAAATTTTTATTCCTCAGTGCCGTTCAACAAAGACAAAGTCTTCAATCATGAGCACATTCCTCACGTGGATATGGAATTTCTGTCGTGCTTCGTGCCAGTCCTTAGTGTTCTTCACGACACTGGGCTGTTAAATTTCTGCACTGATATATGTAATTGGAATGAAGAGCTCATTTTTCAATTTTATGCAACTCTGCACATCACCGGAGACTCTGAAGATGTGAATTCATGGGTGCTGGACATGATGTCTGAAAATGCTCACTACAAGGCACCAGCTACTGAATTGCTTCGTGCTTTGCCTCTCAGTCCTCCCCTTGAAGCTGCTCGTTGCGTCTACAGTGAACCTGAGCTTACAGATCACTATATGCAAGTGCTGATGAAGCCATTGAAGCCAGGTCAGGCCCCAAGAACTAAATTCCTTGTGAAGGAATTGTTATATGTGCCTCGGACTGTCTATCGCATTCTGACGAAGACATTGAATCCTATCAAGGGCCACGACTCGAATGAAGAAGAAGTCGTTGGCATCATGAAGAATCTGCTT
Scaffold35921	Ensembl_Plants	snoRNA	35159	35401	.	-	.	ID=gene:ENSRNA049462998	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=ACGACCTTACTTGAACAGGATTTGTTCTATAGGCTTGTACTGCTGCATCCTTTACCAATAAGGAGGCAAGCACTTCAGTCTGGTTGATGCATTCTAACCTCTGGGCCAGAGCGTGATTAACGGCTTGGATTCATTCTCAAGGAAGCAAAAATTCAAGGCTAATGATTTCTTCGGCGAGCACGTATTCTTCACTGATTACAACCCCTATGACTCTGCTCGCATTAGGAGAGGCGTTTCTGGACT	Scaffold35921	Ensembl_Plants	LTR/Copia	34413	35270	956	-	.	ID=2240909	repeat_name=LTR_HVVMRXALLhA0731O24_v20_c3_3026	repeat_type=LTRs	sequence=CATTCTCAAGGAAGCAAAAATTCAAGGCTAATGATTTCTTCGGCGAGCACGTATTCTTCACTGATTACAACCCCTATGACTCTGCTCGCATTAGGAGAGGCGTTTCTGGACTGCCAGCCAGGCAAATTTTTATTCCTCAGTGCCGTTCAACAAAGACAAAGTCTTCAATCATGAGCACATTCCTCACGTGGATATGGAATTTCTGTCGTGCTTCGTGCCAGTCCTTAGTGTTCTTCACGACACTGGGCTGTTAAATTTCTGCACTGATATATGTAATTGGAATGAAGAGCTCATTTTTCAATTTTATGCAACTCTGCACATCACCGGAGACTCTGAAGATGTGAATTCATGGGTGCTGGACATGATGTCTGAAAATGCTCACTACAAGGCACCAGCTACTGAATTGCTTCGTGCTTTGCCTCTCAGTCCTCCCCTTGAAGCTGCTCGTTGCGTCTACAGTGAACCTGAGCTTACAGATCACTATATGCAAGTGCTGATGAAGCCATTGAAGCCAGGTCAGGCCCCAAGAACTAAATTCCTTGTGAAGGAATTGTTATATGTGCCTCGGACTGTCTATCGCATTCTGACGAAGACATTGAATCCTATCAAGGGCCACGACTCGAATGAAGAAGAAGTCGTTGGCATCATGAAGAATCTGCTTTAGTTGAAGCCTTATGCTCCGTGGATTATGAGATTCATCAGAACAAGGTCTTCACTCAACTACAAAGCTGATACACTGAACCATTGCAGTTACTTGCCCCCGATTGAAGCCCTCAAACGGACATTTTCCTCAGCTGATGAAAAGGGCAAGGCTACTGCTGTTATTGATGAAGGCATTCGTCCATTGGATGGTCAAT
Scaffold12189	Ensembl_Plants	snoRNA	58827	58939	.	+	.	ID=gene:ENSRNA049462454	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=ACCGGCTGGGTTGAACAGGATCTGTTCTATAGGCTCGTACCGCTGCACCCTTTACCAATAAGGAGGCAAGCACTCAAGTCTGGTTGATGCATTCGAACCTCTGGGACCAGACA	Scaffold12189	Ensembl_Plants	LTR	53922	58845	20197	-	.	ID=513504	repeat_name=LTR_AC200833.1_85	repeat_type=LTRs	sequence=CCTGTTCAACCCAGCCGGTGCTTGCTGCCCCAATCAGCAAAGAGCCTTTACTGCTTTATATTGCAGCCACTGGACAAGTTGTCAGTACAGTACTCATGGTCGAGCGGGAAGAAGAAGGAAAAGCCTATAAAGTTCAGTGCCCGGTGTATTATATTTCTGAAGTCTTGACTCCGTCCAAGCAGAGATATCAGCATTATCAGAAGCTTGTTTACGGAATTTACATGACCACGAAGAAGGTTGCACACTATTTTTCTGATCATTCCATTACAGTCGTCAGCGACGCACCTTTGTCAGAAATTCTAAACAACAGAGATGCAACTGGTCGAGTGGCAAAGTGGGCGATTGAACTCCTTCCATTGGATATCAAGTTTGAGGCAAAGAAAGCTATAAAGTCCCAAGCAATAGTAGATTTCCTCGCCGAGTGGGTTGAACAGCAACAACCGACTCAGATTCACTCGGAGCATTGGACCATGTTCTTTGACGGATCCAAGATGTTGAATGGTTCTGGTGCTGGGGTGGTATTGGTATCCCCCCGAGGAGACAGGCTCAGCTATGTTCTTCAGATTCATTTTGATTCCTCCAACAATGAGGCTGAATACGAAGCACTTCTGTACGGGTTGCGAATGGTCATTTCTCTCGGCGTCCGTCGCCTAATGGTCTACGGCGACTCAAATTTGGTGGTTAATCAAGTAATGAAGGAGTGGGACGTCAGGAGCCCGACTATGATTGGTTATTGTAATGTAGTGAGAAAGTTAGAGAAGAAGTTTGAGGGGTTAGAGCTCCATCATATACCCCGACTAAAAAATCAAGCAGCTGATGATTTGGCAAAGATAGGTGCCAAGCGTGAGCCTATTCCCAGTAATGTGTTCTTGGAGCATCTTCACACGCCGTCTGTCCAAGAAGATCCCTTCATGGAGGAGCCCCCACAACCTAAGAGCCCTACTGATCCGACTGAAGTTGAAATCCCAGCCGTGGTTGACTTGGTCATGGAAGTTTTGGTCGTCATACCCAATTGGACAGTGTCGTACATTGCATATATTCTCAGGAAAGAGCTCCCAGAGGATGAAGAAGAGGCCCGTCAGATTGTCCGTCGATCTAAAGCTTTCACAGTAATGGGTGGACAGCTTTACAGAGAAAGTGTTACCGGAGTCGCTCAGAAGTGCATAACACCGGAAGAAGGTCGAGTGATCCTCAACGACATCCACTCGGGGACCTGTGGTCATCATGCATCCTCTCGCACCATTGTGGCCAAAGCATACCGAGCGGGGTTTTATTGGCCACGAGCGAATGAAATGGCAAAATACATAGTCGACAAATGTGAAGGTTGTCAGTTCTACTCCAACATGTCTTACAAGCCTTCATCAGCCTTGAAGACCATTCCGCTCGTATGGCCCTTTGCTGTCTGGGGATTAGATATGGTTGGACCTCTGAGGACTGGCAGGAGTGGCTTCACTCATGTGCTCGTAGCAGTTGACAAGTTTACCAAATGGATTGAAGCCAAGCCTATCAAAAACCTTGAAGCAAGTACTGTTGTCAGCTTCATCAGAGAGTTAACATTCAGATATGGTGTCCCGCACAACATCATCACAGATAATGGGTCGAACCTCGATTCTGATGAGTTCGGAGCCTTTTGCGCTTCCCAAGGCACTCGAGTCGACTATGCTTCAGTCGCCCATCCCCAGTCGAATGGACAAGCTGAAAGAGCAAACGGATTGATTCTCAAAGGACTGAAACCCCGATTGGTGCGTACCTCAAGCATGCAGCAGACGCCTGGGTCGATGAACTTCCATCAGTGCTTTGGGGACTGAGGACAACTCCTAATCGGTCGACTGGCCGAACTCCATTCTTCTTAGTCTATGGGGCTGAAGCTGTGCTTCCGAGTGACTTGCTTCACAATGCACCCCGAGTCGAACTTTTCTCAGAAGATGAAGCAGAACAGGCTCGGCAAGATGCAGTTGATCTCCTGGAAGAGGAAAGAGAGATGGCCCTAATCCGGTCGACCATTTATCAGCAAGACCCGCGTCGATTCCACGCCAGAAACATGAGGGGTCGGGCATTTCAAGAGGGAGACTTGGTTCTTCGAGTAGATCAGCAGAAACCACACAAGCTCGCTCCTGCTTGGGAAGGCCCCTTCATTGTCACCAAAGTGCTCCACAATGGAGCACATCACCTCTACAATGTCGAGCACAATAAAGACGAGCCACGCGCTTGGAATGCGGAGCTGCTCCGCCCCTTTTATACTTAAACATTCAGACTGTTGAGATGTAATAAGAAATACCTTCTAGTTTGATTATCAAAGACACAGTTTTACAGTCTCCTAAATGATTGTTGTTCCTTTTTTATATGTTCTAAATCCACCAGCGGGTGCCTTAGATGTGAATCCGCTTCGCCTAAGTTTCAAAAAAAGAAATCCTGCCGAGTGAAGAGCAAGCCTCTCACTCGGAGGCTTAGCTGCGAATCCGTTTCGCCTAAGTTTAAAAAAATCCTACCGAGTGGTGAGCAACCCTCTCACTCGGGGGCTTAGCTACAGTCCAGTACTCGCCTAAGTTTGAAAAATCCTACCGAGTGGTGAACAACCCTCTCACTCGGAGGCTTAGCTACAGTCCAGTACTCGCCTAAGTTTGAAAAATCCTACCGAGTGGTGAACAACCCTCTCACTCGGAGGCTTAGCTACAGTCCAGTACTCGCCTAAGTTTGAAAAATCCTACCGAGTGGTGAACAACCCTCTCACTCGGAGGCTTAGCTGCAGTCCAGTACTCGCCTAAGTTTAAAAAATTCTACTGAGTGGCAAGCAACCCTCTCACTCGAGGGCTTAGCTACAGTCCAGTACTCGCCTAAGTATAAAACACGTTCCGAGTGAGAACCAATCTTCTCGCTCGGGGACTTGGCCACACGCCCCGTCCTGATCAGCAAGGAAGACAAGGTGCAGGTCAAATGTGACCTTCTCCTTAGAGCTGCGCCATAAGTACAATGTGCGCTCCATCCCGATCCGCAAGGACGACGAGGTGCAAGTCGACCGCGACCTTCTCCTCAGAACTGCGCCATAAGTACAATGTGCGCTCCATCCCGATCCGCAAGGACGACGAGGTGTAGGTCGACTACGACCTTCTCCTCAGAGCTGCGCCATAAGAACAATGTGCACTCCATCCCGATCCGTGAGGGCCACGAGGTGCAGATCGACTGATTACCTTCTCCTCAGAGCTGCATCGCAAGTACAAAGACTATTTCGAGTGAAGAAACAAGTTCCACTCGAAGGCAAACACGAGCATATTCAGAGGAAAACCAAGTGCACATAAATCCTAAGATTCCAGACCATGGATTAAAGTACTCGGGCATCAGGCCCGAAGGAGTTTAACGGTTACAAAATCACTCGTTACAAAATCACTTGGCATTCCGAGGCAAATTTAAGGCGAGGCATAAAGTTTTTTCACTCCGCGGGAGGAGGGCTAGCAGGCTCGACGAACTCGTCCAGATCAATTCCGTGTGCAATCCGAGTGGCAACAGCAATGAAGGTTTCCATGAAGGATTGGAAGTCATGCCTTTTGGTATTGGCAACCTTGATCGCCGCCAGCTTCTCTTCTCGGGCTTCCTTGCAGTGGACACGAACCAGCGACAGAGCCACGTCAGCACCGCATCGGGCAGAAGACTTCTTCCATTCTTGCACCCGGCCAGGGACCTCATTGAGTCGAGTCATCAGAGACTCGAGGTCATTTTGGAGCGTCGCCCCTGGCCAGAGTGCTGTGTCGATGCACGACACTGCAACTTTCAGCCGAGCAAGGTAGTCGACAACACTAGCAACACGGGATTCCAGTCGGAGCATGTTCATGGCAGCTTCGTCCTTAACAGGAGAGAGGATGGGTTCCAAGTTTGTCTCAGTTCGCCCAGTCTCTTCCTTGAAGTTCTGGCAAAATTCTGCACACGCAACACAACGATGAGACAGTAACTATACATCGAGTCAACAGCAATAATTCAGTCGGACAAAGGAAAGCACCTTCGAGCATGACGAACAACTTCTTGGCAAATCCCCCCAGATAATTCTCCAGGTCATCTCTCTTGCGGGCGATGCCTTCTACTTTGTCGGTCAGGACTCCCTTGTCCTTCTTCAAATGAGTCGCTTCCTTGTTGGCTTCATCAAGAGCAGTCTTCAGCTTGGCGTTCTCTTCCTCCAGTTTACCGACTGAAGAAGCTTCTGGTCGGCGAGTGCGGTTTTCTCTTCTGCTACCTTCTGTGCAGCTGCAAGGTCCAGATCCTTCTTCGCCAGAGCCTGGTTCATTGTTTCTGAAAGAAGTAATGCTCGGTTCAGGAAAAGCAAATAACACTTGGATCAGGAACAAGCCAGTCGGCAAATTTTTCGTACCAGCGGCCTCATCCTTGGCTTTCTGCAAGTTCATCTTGACTAGCTCCAGATCGAGATTGAGCTGAATCTGCTTCCGCTCTAGGTCAGCAAAACGAGCTCCAAGTTCACAGGATTTCTGTAATCAAAGGACGGTCAGTCGACAGATGAAAAGATTGGTTACTTCAGAGAAATAGAGTGATAAATTCAACAAGTTCTAAGACTACTACCGAATCAAACATCCAACAGTAGTCTCGGGGACTACACCCAGTGGGTGCACTTAGCATGCCCCCACTGGTTCGGTTTCCACTCGACATGGTTCGTCCAGGCCGAGTGTAAAAAGAAAGGAAGAGAAAGTTGTTCTCAGACCATAGTCGACTACGGTCTCGGGGACTACACCCATTGGGTGGACGCAGCGTGCCCCCACTAGTTCAGGTTCCACTTGACCTGACCATTCAGACCGAGTGAGAAAATTACGATTATCAGACCACAGTCGATTGCCCGCAGTCAACTATGGTCTCGGGGACTACACCCAGTGGGTGCACTCAGCGTGCCCCCACTGGTTCAAAAACTCAATCGACACAACCTAG
Scaffold12189	Ensembl_Plants	snoRNA	58827	58939	.	+	.	ID=gene:ENSRNA049462454	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=ACCGGCTGGGTTGAACAGGATCTGTTCTATAGGCTCGTACCGCTGCACCCTTTACCAATAAGGAGGCAAGCACTCAAGTCTGGTTGATGCATTCGAACCTCTGGGACCAGACA	Scaffold12189	Ensembl_Plants	LTR	58924	61501	16236	-	.	ID=513505	repeat_name=LTR_AC200833.1_85	repeat_type=LTRs	sequence=TTTCGCGCGTGCGTTCGCGGTGTCCTTCTCCGGCAGCCGTCGACCCAGTACCGGTCGGCTCCCGCGGTGTCCTCGCTCCCAGCTGTATGCCGACACAAGCGATCCGGTCGGTCGCGGCTTCAGCGGTGGGTGAAACACACGGTGGCTCGTCAATCGGACACCCCACAAGTCACGGAATCAAGCCCGACGAAACTCTCTACGGCCTATTCGATCTGTCGACTGGCTCCGTCGAGACCGCATCCTAGTGCGATAGCAGCGATCCTGCAGCTGAAGTCCTGATGGTCGACGGACCACGTAGTCCGCCTGGCTTCCGCCGCGACGACGGCGGTGATGGTGGCGGCGATCCGTCACGCATTCACGAGGAATACCACCCCGAACCCCTTTCTTCGCAGCAGAGGGAAGAGCTTCGCCGCCGCAACATGGATGCACTCCACACGCCCATCGTTGGGGAAACCCCCGAGGCTCGGGCCTTGGAGGAGGCACGCCTGGCCAATTTTGCTGAGCGCACTCGACTGGAGAACCTTCAGCATGCACTCGACGAGCGTGCTCGGCAGCGGATCCCTGAGTCCAGTCGACGTTAGCTTTTTCCGCCTCAACCTCAGGTATACCGCACTCCGATTCAACAGCTCACAGCTGCGGCCCGTATAGCAGAGTCAATTCAGCCTTCCTAGTCGGAGGCTGGCAGAGGTTTGATGCAGATCCGGGCCTTACTCCGGGCAGCAGGAGAGCAGAACACAGTAGTGTCTCAGTCGCGGAATAGGATTCATAGCAGATCTGTGATGTCAGATACAGTTCAGTCGGCCCACAGCCCAAGATCGCCCCCGCGGCGTGAGGGACGTGAGCATCGACAGGATCAGTACAGGAACCACGAGCAGTATGATCACCGACTCGGCCGTGATGACCGTCGTCGAGTGCCCACACCTCTTCTGAGGAGTGGATCATATGTGCCTCGGCAATATGATGACAGACGCCCTCACAGTGGCGAGCGTAGAATACCAGTCGACCCAAGGGAGCCAGGCTTTGATGCGAGATCTATTCTCGTTCAAGGTTTGGTCGACAGGAACAGAGCACACAGAGAGGGCCTTGACAGAGATCACCCGACTGGCAGCAGAGTTCATCTTTCAAGTCCAGAGTGTTTCAGCAGAGCCATCAGGGCCGCGGTGATTCCTCCTATCTTCAGGTTGGCGACTGGAGTCAGCAAGTTCACTGGTGAGTCCAAGCCTGACACTTGGCATGAGGATTACCGAGTGGCTGTGCAGATTGGTGGCGGTAATGATGAAGTGGTCATGAAGCATCTTCCTATGATGTTGGAAGGTTCAGCCAGAGCATGGTTGACTCAGTTAACACCAGGCAGTATATTCAGTTGGGAGGAACTTGCCCGAGTGTTTGTTAGAACTTTTGAGGGTACTTGCAAGCGGCCAGCAGGATTAACAGAATTGCAACATTGCGTGCAAAAACCGAATGAGATTCTGAGAGATTACATTCAGAGGTGGACCACTTTGCATGACACAGTGGAAAATGTGTCCCAGCATCAAGCAGTTTGTGCCTTTAAGGAAGGCGTTAAGTATCGAGAACTGATCCTGATATTCGGTCGGACGGGAGATATGTCTCTGACTCGGATGATGGAAATAGCCACTCGGTACGCTAACGGAGAAGAAGAAGATCGACTCCGCAGTGGAAAGAGCAAACCAGACGGTCAGGACACTGGTGGAGGCAATTCCAATCGGAAACAGAAGCGTAAAGCTGAGCCTGCAGGGCCCGGTGAAACTGCGGCAGTGATTCAAGGAAAGTTTAAAGGGAAACCTAAGGGGCCCTGGACCCCAAAGAAAGTGAAAGATCAAGCCGGAAATGATGTGTTGGATTTGCCGTGTCACATTCACACCAAGAAGGATGAAGAAGGTAATCTGATTTATCCTAAGCATACCACTCGACAGTGTCGGGTTCTGATCCAGCAATTCCGAGAGAAACAACCTAATGAGAAGGAAAAGGAGTCAGACAAGGATGAGGACAAAGAGGAAGATGATGGTTTTCCCAATGTCAATTCCACCCTAGTGATTTTTGCTGATGTTGAGAGCAAAAGTCAACTGAAAGTGATCAACAGAGAAGTGAATATGGTTGCTCTAGCAATGACAACATACCTGAAGTGGTCACAAACAGCTATCACATTCAACCAGTCTGATCATCCTGCTCGCATAGCCACTCCAGGGAGGCAAGCGTTGGTGGTCGACCCAGTCGTTGGGGGCACTCGATTGACCAAAGTGTTGATGGATGGTGGTAGTGGTTTGAATATCCTTTATGCTGAAACCTTGAAGGGGATGGGCATTCCGATGTCCAAACTCAGTGAGAGCAACATGAGCTTTCACGGCGTCATCCCTGGCAAGAAGGCTGACTCACTCGGCCAGATAACCCTTGACGTGGTTTTCGGTGATTCAAAGAATTACCGTAAGGAAAAGTTGACATTTGAAGTAGTGGATTTCCAGAGTGCTTATCATGCTATTTTGGGGAGGCCTGCATATGCATGCTTTATGGCTCGACCATGTTATGTGTATCTCAAATTGAAAATGTCTGGTCCCAGAG
Scaffold26923	Ensembl_Plants	snoRNA	13159	13396	.	-	.	ID=gene:ENSRNA049462204	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=AAGTCCTAGCTTGAGGACATCTGCCGTGAGGACATCTGTTCTATAGGCTCGTACCGCTGCATCCTTTACCAATAAGGAGGCAAGCACTTCAGTCTGGTTGATGCATTCTAACCTCTGGGCCAGAGCATGATTAACGGCTTGGATTAACCTGATGGGTGACATCCAACCGCTGTAGAGGATCGTTCCTGTTCCAGTACACACTGTGGTGCAGGGTGGCTTAGAGGTTGTCTGACAGACT	Scaffold26923	Ensembl_Plants	LTR/Gypsy	13368	14990	8448	-	.	ID=383268	repeat_name=LTR_AC200776.1_14	repeat_type=LTRs	sequence=GTCTCGTCGGTGACGTTGGACCGTCATCCAATGCATGTGATGGGTGCGTTTGGGAGCGTTTGGGAGGCATGGTGAAAGTCGGAAGCCTATGATGAAAGGAACATCTGGTTTAATTATAAGCCGGAGGAATTTACAGTTCAGTGTTAAACTGGCGGCTTATGGAGGGTCCTAATGACATATATCTAATTGCATTGGGTTATCTAAGCCGCTGGAGGTGATGAGAGTGATTCAATTGTTCATCATTTCATCATAAGCCGGAAATTTCACGGCGCGTGGTTTCTTTGAGCCGGAAATGTAAGCCGCCATAGCTCAGCAGAAGCAGTTTTTTACTAAGTATGGTGAAAACAAGTTTCACATATCGCAGTGAAAATTTCGGATCAAAATGGTCGACTAAAGGGAAAAATTCCTAGACCTAAAGCAGACGCAGGAGAAGTTCGCAGGCTCAAACAAGGATTCTATGCAGTAAAAAGAGATATATTTGCATTTGAAATGGGTGCCAAACAGCTACCGCGGCAGGTCTATACTGGTCTAAGATCAAGAAGGGTAGTAAAAATAAAAACTACCAAGAGCTCGTGGGCGACGGCGAAGAACACGGAAGAACAGGACGAACCCTACTGCAGATCTGTTCTACGGGGCAGCCAGGACTTACAGGTGCTGGTGAGTCGCGGAGATCGCCGCTGTTCTCTCTGGCCACAACAGGTTGTTGATGCAGCGGCCGGAGTTGGTGAGGAGGAGGAGACCCGCGGCGGCGACAGCAACAGAGCTCGAGCGAAGGAGCAGTGGTGCGAGGAGGAAGACGGGCTGCTGGAGGCTCAACAGGCCGGGCTATTTATAAGGCCAGACTCATAAGTTGGCGCGAGAAACGAGGAGGCCACGGCGCGGTTATCTCATTATAAAACGCCTCGATTTTCGGGATGGTAGTAAAGATAAGATCCGTTGCGGATATGGTGGAGTAAAAAACGGATTAATGGAAGATGACATCACGGCGGATTACCCGGACTCCAGAGGATGACGTCACGCCGGGTTATGGCCTTCATGCAATTGTAAGTCGGAGATTGTTCTGTCGAAGGAATTGAAGATTGACATGAGCCGGCTCATGCCAATCTGGGGCCTAATGTTGATGATATAAACCCTATAGTCACCCGCCAGCCGGGGCCGGGTTACTCATAATGGTCATCACCTGAAGCCCGGCGCCCAGCTTGCAGACNNNNNNNNNNNNGATGGGTTTAAGACCCGGAGATGGTTTAAGGCCCGTAGTTACAATCATTATTATGGTAGAACTGGTAGTGTAAGGCAAGAATAGTAGAGAGTCCGAGCCGGACACTCTTATGAGCCGGCGAGGGACTCTGAGAGCTGCGGGGCGTCAACCTGTCTATATAAAGGGACGACCCGGCAGCGGTTTAGGGACAAGAAAGATCTCATCGAGAGCCAGGCATAGCGGTTAAGCTCCCTGGCCATCGAAACCCTAATCAATACCACCTCAACTGGACGTAGGCTTTTACCTTCACCATAAGGGGCCGAACCAGTATAAACCCTCGTGTTCCTTGTCCCGTTTAACCCCTTCAAGCTTCCTAGCGGCGATGGCTCCACGACTAAGTCCTAGCTTGAGGACATCTGCCGTG
Scaffold16010	Ensembl_Plants	snoRNA	199803	199894	.	+	.	ID=gene:ENSRNA049472605	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=ACGACCTTACTTGAACAGGATCTGTTCTATAGGCTCGTACGCTGCATATGTTCAAAACATCCTTATTGAAGTATCCCAAAATAAGTATGGAT	Scaffold16010	Ensembl_Plants	LTR/Gypsy	197106	199813	15071	-	.	ID=1278238	repeat_name=RLG_Sumaya_3B_082_K20-1	repeat_type=LTRs	sequence=AGTAAGGTCGTTGTTTTGAACATATGGTTATGCTCTATCCACCCATGCCCCTGTTTGCAGTTATGAAGTTGTGTAGCATGTCTTGTTCTTGCTCAACTTTTTCTATAAAATGTTCCTAGCAGAATGTTAACATGTTAATCAATTTTGCCATGGTTGTTGCCATTGATCCATGCATCCTATGAACTTGCTCTTGCCATGGTTAGCTTCATGAACATGTCATCTTGCTATTGGTATGCTTGTTTTGTCATGCAATGCTTTGTGGTGAGTGGCATGAGCTCGCAAAGTTGCTATCATAATTCTGCTTATGCCATGCTCTGTTTTCTGCCAAGTCTGAAACTGTTAATGAAACTAGCTATATTTACATGGGTGCCATCATATCTTCTGTTCCTTTTTTGGCTCATGTTCAGTAAGGGACTTCTGTTCTATGCATTTAGTAGAATCATGCCATGCCTTGAGTTGCTATGATGTGTTCCTGTAGCATGTTGTTCGCTTGCCCTAAACATTGCTTCCTGATGCTGTTTATGCCATGTTAGTATTTTCACCAAGTCTGTGATGCTGTTATCTTTTGCACTTTTGCCATGCTTGTTTGAACCTGCTCTTCTGTGATTTAGTCGCAGCTCAGTGTTCATGTTTTGTCAAGCATCTCTTGTACATAACTGGCATATGCTTTGTTGTTATGTTGGAGTGTAGTAGCTTAGTTTCTTGTTGCATGCTAAGTACCCTCATGCTGTTAATTATAGTTTTGCACCATCCTTGTTTCGCTTGCCATTTGCAAACCGTGCCTCCGTTTCCGGTGATCTTTATATCGATTTCAACCGAAATCATCTCATCTTTCCAGTGGCATACTTGGTTTGCCAAGTTGATGCCTTCTTCATCCTTTTTCCTTCCGGAGCACGCATATGCATTGCATATCACATCTCGCATATCATGCCATATACTGCATCATGTTCCTTGTGCATTGCACCGTGTTTGATTGTTGGTCCTTTGCTTGTGTTCTTGCTTTGGGTAGAGCCGGGAGACAAGTTCGTGACCGAGGTACCTGTTGAGTACGCTTTCGAGGATCAAGCTTTCGTCAACTCTGAGAACTTTGCAGGCAAGATGACCATACCCACGAAATCACTTCTATCTTTGCTTGCTAGTTGTTCGCTCTATTGCTATGACGCGCTAACTACCACTTGCTACATCATGCCTCCCATATAGGCATGTCAAGCCTCTAACCCACCTTTCCTAGCAAACCGTTGTTTGGCTATGTTACCGCTTTTGCTCAGCCCCTCTTATAGCGTTGCTAGTTGCAGGGGAAGACGAAGATTGTTCCATGTTGGAACATGGATATGTTGGGATATCACAATATCTCTTATTTAATTAATGCATCTATATACTTGGTAAAGGGTGGAAGGCTCGGCCTTATGCCTGGTGTTTTGTTCCGCTCTTGCCGCCCTAGTTTCCGTCATACCGGTGTTATGTTCCTTGATTTTGCGTTCCTTACGTGGTTGGGTGTTATGGGAACCCCTTGACAGTTTGCTTTGAATAAAACTCCTCCAGCAAGGCCCAACCTTGGTTTTACCATTTGCCTCACCACCACCTACTTCTCCCTTGGGAGTCGCGCTCTCGAGGGTCATCTTTATTTTACCCCCCCCCCCACGGGCCAGTGCTTCTCTAAGTGTTGGTCCAAACCAGATCCACTTGCGGCGCCACCTCGGGGAAACTTGAGGGCTGGTTTTAGCTGTACGTAGTGTTCATTCGGTGTTGCACTGAGAACGAGATATGTGCAGCTCCTATCGGGATGTCGGCGCATCGGGCGGTCTTGCTGGTCTTGTTTTACCATTGTCGAATTGTCTTGTAACCGGGATGCCGAGTCTGATCGGGTCTTCCTGGGAGAAGGAATATCCTTCATTGACCGTGAGATCTTGTGATGGGCTATGTTGGGACACCCCTGCGGGGTATAAACTTTCGAGAGGCGTGCCCGCGGTTATGTGGCACATGGGAATTTGTTAATATTCGGTCGTAGATAACTTGACACTTGACTTAATTAAAATGCATCAACCGCGTGTGTAACCGTGGTGGTCTCTTTTCGGCGGAGTCCGGGAACAGAACACGGTCTTGTGTTATGCTCGAAAGTAAGTAGTTTCAGATCACTTCTTGATCTTTTCTAGCTTCTCGACCGTTGCGTTGCTTCTCTTCTCGCTCTTATTTGCGTATGTTAGACAGCATATATGCTTAGTGCTTGCTGCAGCTCCACCTCATTACCCTATCCTACCCATAAGCTCGTGGGTCTTTATCTCGCGGGTGTGAGATTGTTGAGTCCTCGTGACTCACGGATACTTCCAAACAGTTGCAGGTGCCGATGATGCCAGTGCAGATGACGCAACCCAGCTCAAGTGGGAGCTCGATGAAGATCTTGATCGTTGCTTTGTTTCTTTTCCTGATGATCAGTAGTGGAGCCCAGTTGGGACGATCGGGGGTCTAGCATTTGGGGTTGTCTTCCTTTATTTTGGTCTCGTAGTCGAAGCTTTGTTTGATCTCTGAATGAGGTATGAACAATCTATGTATTGTGTGAAGTGGCGATTGTAAGCCAACTCTTTATCCCTTTCTTATTCAGTACATGGGATGTGTGAAGATTACCCCTCTTGCGACAAGCCTACCATGCGGCTATGCCTCTAAGTCGTGCCCCGACACGTGCGAGATATAGCCGCATTGTGGGTGTTAC
Scaffold16010	Ensembl_Plants	snoRNA	199803	199894	.	+	.	ID=gene:ENSRNA049472605	Name=Plant_U3	biotype=snoRNA	description=Plant small nucleolar RNA U3	sequence=ACGACCTTACTTGAACAGGATCTGTTCTATAGGCTCGTACGCTGCATATGTTCAAAACATCCTTATTGAAGTATCCCAAAATAAGTATGGAT	Scaffold16010	Ensembl_Plants	LTR/Gypsy	199847	200510	1360	-	.	ID=1278239	repeat_name=RLG_Sumaya_3B_082_K20-1	repeat_type=LTRs	sequence=CCGGCCTCCCCTGCTCGCCAGAGCCGCCCCATCGCCGGCCTCATTCAACCTCCGGCAGGGACGGCATCATCCCGATCCCGCATGGACCAGATCCACCAAGACCGCGAACCAAACGGCGCAGCACTCGTTCCTGGATCCGTCCATCCCGCACCGCATCATCCAATTTCCTGGAGGTTGAAATTCCACCAAGTCCCGAATCCCTGATATTTTGTGCACTTTTTCATCATGCCATATCACATGCTCGGTGATCCGTTTTGTGAATATGTTATATCAAATTGTTCGTCTTGATGAGCTCATCATGCCAGTGGCATTTCCATGCATGTTACTCTCAGTTATGATGCCATTTTTATTGATGCAAGAGTGCTATAAAATATTAGGAGCTGCTACTTATCAGATCATGGTGATTTGTTATTTTTGTTGCATTTGATGTGTGCATCATATGAGCATGAGCTCTACATGTGTTTTGAACTACAACATGCCATCTTTGTAGAGGTGCTTGTCTTGTATTTTTGTGATCTATGTGGTGACTAGCACAAGCATGCAAACTAGGCTTCGTGATGTTGCTGTCTTTTCCTGCTGTTATTTTGATGGCATGTAAACTTTATACTACAGTGATATCCATACTTATTTTGGGATACTTCAATAAGGATGTTTTGAACATAT
Scaffold16026	Ensembl_Plants	antisense_RNA	48690	48828	.	+	.	ID=gene:ENSRNA049479537	Name=IsrR	biotype=antisense_RNA	description=Antisense RNA which regulates isiA expression	sequence=TTTGGCCTAATTCTTCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTTAAATCTTAAAAATCTAAAATTTGACCTGTTAGTGTTCTA	Scaffold16026	Ensembl_Plants	LTR	48816	49875	3955	+	.	ID=411296	repeat_name=LTR_AC200807.1_50	repeat_type=LTRs	sequence=GTTAGTGTTCTAAGTAGTTGCCGAGGCAGCGTGGGAAGTGGGGACACACACGTCCCATCAGTCACCACACGTCAATCAAGGCCGTAGGCGGTTGGGGCCCACGGCGCTCCGCACTTGTCCTTTGGATTCACCTCGAAGCCAAGTCCGAGCGCGTCTTGGGCCCGGGGGCTACTGTCGGCGTTCTGGGAACGGGGATCCCCAGACTTGCCTGCCTGCGGCCCACGGCGTGGCTCCTCCAGCGGCCTGGTACGGCCCATCTTCACCAGCAAACACTCAAGACCATCGCGAGGGGACGAGCCTCACGAGGCGGACGACACAAGACCTCCTCAGGGGCGGCCTCACTAGGCCCGCTCGCGAGGAGCGGAGAGATCAAGGCGGGGGCACCTCGTCAGGTTCCCATGACGTGACCCGTGACGACCAAGGCAAGGCGGGCGCTAGCGGGCGTAGAGTACCCGTTGCCTCTTTGGTGCTAAAGGGGCAAGTGCTGGCGAGGAGTCCCGAGGCATCAGGCAAAGGTTTCCATATCGGTGCAACGAGACCAAGACCAGCAGGACGGCAGGACGAAGGTCATCGCAGAGCCCACGACGGCGTCACCACCAGAGCCTTTGCCAGGCGAAGACCACCTTTTGTCAGAATAGCCTGTACTAGTTGTCCCCCTTCAAATTGGCCGTTGTGGGATCCCTTCCCGCCTAATATTTGTGAAGAGGACCAGGGCCTCTATAAATAGGACTAGCCACCACCTTAGAACGGGACGGATCATTCAGATCACCCTTGACCACACAAGCTCACCGAGCTCAAGAATACCACTCCTCAGGAGGCTGTTCATCCCTTGTACTTGTTCATCGTCAGCCTACTAGGCAATCCACCACGCCACACTGGAGTAGGGTATTACACCGCATCGGTAGCCCGAACCAGTATAAACTCTTGTGTCCCGTGTTCTTCGGGTTCGGCGAGCTGAGCTTTGAGATCGTGGTGAGAGCGAGAGCTAGGGGGAGAGAGATCTTCGTGCGCACCCCAGAGTTCGAACCTTAAGGGTTTTGCCGGAACCCGTGATCCGAC
Scaffold53226	Ensembl_Plants	antisense_RNA	23518	23704	.	-	.	ID=gene:ENSRNA049474406	Name=IsrR	biotype=antisense_RNA	description=Antisense RNA which regulates isiA expression	sequence=AATAACCAAATATAACACTGGGGCTAAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCA	Scaffold53226	Ensembl_Plants	LTR	23379	23946	3424	-	.	ID=2238310	repeat_name=LTR_Gr_chr_04_953	repeat_type=LTRs	sequence=ATTGAACCATACAAAACAACAAGCGATAAAACCAAAGACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAATGCACGGCGAGCCCATGCGAAGGGTTTGGTTAAAATATGCCAAATTCCGCCAAATACACAAATAAAACCCAACCATACATGCCCACCAATTATATCTTCTAAATCATCTACACTAACAATCCACCCTTCTCCACCAAAAGGAGATTTTAGTAAATAACCAAATATAACACTGGGGCTAAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCAGACATAACCAAAGAATGGAAAAGATTCCTCAAGAGTCTCGGGTCCCAGAAGCGCGTGATAAATGCCACCGAAGCCTAAGACTGCGGAGGAAATTAGGTGAAGTACGCCAGATACAAAGTACGGAAAAGTATCTAGAAC
Pt	Ensembl_Plants	antisense_RNA	10169	10355	.	-	.	ID=gene:ENSRNA049468098	Name=IsrR	biotype=antisense_RNA	description=Antisense RNA which regulates isiA expression	sequence=AATAACCAAATATAACACTGGGGCTAAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCA	Pt	Ensembl_Plants	LTR	10030	10597	3419	-	.	ID=2238304	repeat_name=LTR_Gr_chr_04_953	repeat_type=LTRs	sequence=ATTGAACCATACAAAACAACAAGCGATAAAACCAAAGACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAATGCACGGCGAGCCCATGCGAAGGGTTTGGTTAAAATATGCCAAATTCCGCCAAATACACAAATAAAACCCAACCATACATGCCCACCAATTATATCTTCTAAATCATCTACACTAACAATCCACCCTTCTCCACCAAAAGGAGATTTTAGTAAATAACCAAATATAACACTGGGGCTAAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCAGACATAACCAAAGAATGGAAAAGATTCCTCAAGAGTCTCGGGTCCCAGAAGCGCGTGATAAATGCCACCGAAGCCTAAGACTGCGGAGGAAATTAGGTGAAGTACGCCAGATACAAAGTACGGAAAAGTATCTAGAAC
Scaffold21980	Ensembl_Plants	antisense_RNA	18113	18299	.	+	.	ID=gene:ENSRNA049451697	Name=IsrR	biotype=antisense_RNA	description=Antisense RNA which regulates isiA expression	sequence=AATAACCAAATATAACACTGGGGCTAAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCA	Scaffold21980	Ensembl_Plants	LTR	17871	18438	3424	+	.	ID=2238308	repeat_name=LTR_Gr_chr_04_953	repeat_type=LTRs	sequence=TTGAACCATACAAAACAACAAGCGATAAAACCAAAGACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAATGCACGGCGAGCCCATGCGAAGGGTTTGGTTAAAATATGCCAAATTCCGCCAAATACACAAATAAAACCCAACCATACATGCCCACCAATTATATCTTCTAAATCATCTACACTAACAATCCACCCTTCTCCACCAAAAGGAGATTTTAGTAAATAACCAAATATAACACTGGGGCTAAGGGTCAAATTGGTAATTTTTCTTACATCTCCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCAGACATAACCAAAGAATGGAAAAGATTCCTCAAGAGTCTCGGGTCCCAGAAGCGCGTGATAAATGCCACCGAAGCCTAAGACTGCGGAGGAAATTAGGTGAAGTACGCCAGATACAAAGTACGGAAAAGTATCTAGAACT
Scaffold162941	Ensembl_Plants	antisense_RNA	1440	1625	.	-	.	ID=gene:ENSRNA049447907	Name=IsrR	biotype=antisense_RNA	description=Antisense RNA which regulates isiA expression	sequence=AATAACCAAATATAACACTGGGGCTAAGGGTAAAATTGGTAATTTTTCTTACATCTCCCCCCCAGGGGCCCATGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAACAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCA	Scaffold162941	Ensembl_Plants	LTR	1274	1657	2382	+	.	ID=2246026	repeat_name=LTR_Gm_09_3061	repeat_type=LTRs	sequence=AGGTTGGGGAGTAGGGCCAGGGGCGAAGTTCTAGATACTTTTCCGTACTTTGTATCTGGCGTACTTCACCTAATTTCCTCCGCATTCTTAGGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCCGAGACTCTTGAGGAATCTTTTCCATTCTTTGGTTATGTCTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTACTCAAGGCTCTTTATTTTGGCGGTGTATATGATACATGGGCCCCTGGGGGGGAGATGTAAGAAAAATTACCAATTTTACCCTTAGCCCCAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGTGGAGAAGGGTGG
Scaffold168409	Ensembl_Plants	sense_intronic	530	613	.	+	.	ID=gene:ENSRNA049479583	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTTGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	Scaffold168409	Ensembl_Plants	LTR	1	1136	8458	-	.	ID=2151345	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAATATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCATGGCCTAATTAATTTAATTATCTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAAATATTCAGAGTTCCTAGAGCTCCTCGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTTGAATAGTACTCAAGATCCTCTGTTTTCAATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCAAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTCTATAGCTATTTCCATATCTTTTTTTAAGTAATGAGCCTATCCTCTATCTTATTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATTAGATAAATTTTACATTAGCTATTTCCCGTTATTATTCGGTACTAATACTAACATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTT
Scaffold137090	Ensembl_Plants	sense_intronic	743	806	.	-	.	ID=gene:ENSRNA049479471	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CTGAGCCGTATGAGGTAGGAAACTTTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGAC	Scaffold137090	Ensembl_Plants	LTR	17	1178	7868	-	.	ID=2151297	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TGAGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTAAGTTCTTTTTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAAACGGGATAGTTACCTTTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTTTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACATGCCATTCTACAGGGTGATTCAGAAATTGCGGAAGGTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAACGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATTTGAATAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGTAAGATCGAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTTATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAAGTAATAAACTGAATAAAAAGAGGGGGCAATCTAAATATTGCTAATATATTAGGACCATCTTATTAATAATTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAAAAAATACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAATATTTGTTTTTCAAGATAAACAATGTCCGTTAGGCACCTAATCTTTATGTCATAATAGACCCAAACACTTGCCTCGGATTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAAATAGAAGGATAGTAGATAGTAAAGAAAAGAACTAATCACAATATCTATCTTTCAA
Scaffold128010	Ensembl_Plants	sense_intronic	145	301	.	-	.	ID=gene:ENSRNA049477549	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CGGAGCCGTATGAGGTGAGAGTCTCACGTACGGTTCCTTTGGGAAGGGTGTGATACCACCACCTATCAGGCCCGACGAGCAGTCCACGGAGCTGCATCCCTACTCACCCGGTCTATGCACATCGCTCTTTCCAGGAGGTTGGCTGCCTATCCTAGAT	Scaffold128010	Ensembl_Plants	LTR	266	300	265	+	.	ID=2131865	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AACCGTACGTGAGACTCTCACCTCATACGGCTCC
Scaffold172027	Ensembl_Plants	sense_intronic	197	275	.	+	.	ID=gene:ENSRNA049475814	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold172027	Ensembl_Plants	LTR	1	992	7443	-	.	ID=2131844	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGAATTGTTTGATCTTAAAGGGGATCTTCAATAATTTCGCACATAAGGGGTTATTTTTTGGTTTCGTCCAGTCATTAATAACTTTATTATTTTTAGATAATAGTAGATAGAAAGAACGATCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTACCATCCACACCAGAATAGATAGAGTTTTCCGAAGATACCTGCTAGTTGAGGAAGGCCTCCTAGGGATTAGAGACACAGGGCTAAAGAGAGAGCCAAAAATGGATCTTTCGTGTATAATCCTGCATAATATCAAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTTGAAAAAGAACTACTAATCCTTAAATTTTCGAGGAACCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCTGTAGGAG
Scaffold14474	Ensembl_Plants	sense_intronic	935	1008	.	+	.	ID=gene:ENSRNA049474525	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GGAAGTTGTATTCGATGAAAGTTGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold14474	Ensembl_Plants	LTR	4	4674	33315	-	.	ID=2131770	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGATATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATATGATAGATATGTCAAAAGCAGGTCTGATTGCACCTATTCCTAATCCTAAATAGAATGTAAGGACATAGGGATTTCTATGTAACCAGAGTATCCTGTTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCATCAAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTTGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCATGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGTTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGGAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATACAAGAAAGAAGAACTAGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAGTCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACAACTTTCATCGAATACAACTTCCACATAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGAATTTTCCATATCCATATGATCGAGTCCTTAGGTTTCCGAAATTGTGTAATGGAAAAAGAAGTGCTTCTAATCATTGCTATTTGACTCGACCTGTTCTGAAAAAGTTGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTGTGAAAGAATTTCCATATTGACCTTGGACATATAAGATTTCCGAATAGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATAGCTCACACCGGGTAAATCCTTAACCCTTCCTGCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTATAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTTGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCTGCCCCGAAGACTAACTAAGACCAATTGAGTCACATTTTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCA
Scaffold14474	Ensembl_Plants	sense_intronic	3271	3349	.	+	.	ID=gene:ENSRNA049474516	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold14474	Ensembl_Plants	LTR	4	4674	33315	-	.	ID=2131770	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGATATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATATGATAGATATGTCAAAAGCAGGTCTGATTGCACCTATTCCTAATCCTAAATAGAATGTAAGGACATAGGGATTTCTATGTAACCAGAGTATCCTGTTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCATCAAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTTGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCATGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGTTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGGAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATACAAGAAAGAAGAACTAGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAGTCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACAACTTTCATCGAATACAACTTCCACATAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGAATTTTCCATATCCATATGATCGAGTCCTTAGGTTTCCGAAATTGTGTAATGGAAAAAGAAGTGCTTCTAATCATTGCTATTTGACTCGACCTGTTCTGAAAAAGTTGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTGTGAAAGAATTTCCATATTGACCTTGGACATATAAGATTTCCGAATAGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATAGCTCACACCGGGTAAATCCTTAACCCTTCCTGCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTATAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTTGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCTGCCCCGAAGACTAACTAAGACCAATTGAGTCACATTTTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCA
Scaffold45390	Ensembl_Plants	sense_intronic	2917	2994	.	+	.	ID=gene:ENSRNA049473699	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAAGCTAAGGTTTCATGTACGGTTTTGCAATAGCGGTGGGAGCTGTGATGTTATTATCGACTATGAT	Scaffold45390	Ensembl_Plants	Retroelement	2884	3044	722	-	.	ID=2237283	repeat_name=RXX_Gk_DX403548.1_7560	repeat_type=Unknown	sequence=ATATGTTGGCCGTGCTTCAACTATATCAACTGTACTTGAACTGTTAGATAATCATAGTCGATAATAACATCACAGCTCCCACCGCTATTGCAAAACCGTACATGAAACCTTAGCTTCATACGGCTCCTCTATGATCAGAAAAAGGACTGTTTCGGTATTA
Scaffold2536	Ensembl_Plants	sense_intronic	185324	185385	.	+	.	ID=gene:ENSRNA049472840	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCGGATGAGGGGAGACCCTCACGTCTGGTCCGGAGGGCGGGGATATCCCGACCCTAC	Scaffold2536	Ensembl_Plants	DNA/En-Spm	185274	185324	265	-	.	ID=812541	repeat_name=DTC_Jorge_3B_115_C24-1	repeat_type=Type II Transposons	sequence=CCTACTCATTCGGTGTCGGGTAGTGTGTGTGTGTTTGAGAGAGAAGCCAG
Scaffold11852	Ensembl_Plants	sense_intronic	206201	206284	.	+	.	ID=gene:ENSRNA049472571	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTTGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	Scaffold11852	Ensembl_Plants	LTR	206064	209676	23232	-	.	ID=2151134	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TTATGGAAGGGCACCGTTTCACAATTTAATGAATCCTCCACTTATTTGATGGAATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTATCGGTATGGGTGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCAGGGGTATTGGCAGGAATTAATTGAGACTTTAGCATGTGCTCATGAACGCACACCTTTAGCTAATTTAATTCGCTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGCTCGCTTTTCCATGGGTTATATATTCACTTATGCAACTTTCTTGATTGCCTCAACATCAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTGTACTATATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTGCCTTTTTAGATTTCTTTTTCTATTTATTTTTTCATCTAGGATTAGAACCTATACTTGGTAATAATAGCAACAACACATTATGGCAAAAAAAAGTTTGATTCAGAGGGAGAAGAAGCGACAAAAATTAGAACAGAAATATCATTTGATTCGTCAATCTTAAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAACGAAAATGCAAGAAAAATTGCAATCCCTACCGCGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTTGACCGAAAGACCTAGAGCTAACTATCGACATTCTGGGCTATCCGGACACGTACTTTGAGAAATGGTTTGTGAATGTTTGTTACCAGGTGCAATAAAATCCATTTGGTAAGGATAAAATACCCTTTCATATTTGTATGGATTTCTGGAAGTGATAATCATAGAGGAGCCCTCTTTACCATTCTGTATAAATGGACTATTCTATTTGTATAGATATTGGTAAAGGAGCGTATCCAACCCTCTTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGTATATAGCAGTTTGGTAGCTCATAAGGCTCGTAACCTTGGGGTTGTGGGTTCGATTCCCCCTACCGGCTCCATACTCCTTCTTTATGATATATGCATGCATGATATAATATATACATCATGCATTTGTATCTGGCTTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTCTCGGAAGAAGAAAAATAATAAAAGAAAGAATAAATTATGAAAGAAAAGCGTCCATTGTCTAATGGATAGGACAAAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATCTAATTTCTATCTATTCTTTAAATAACTATACTAAACTAAAAATAACTATACTAAACTAAAAACAAAGAATTTTTTTTGCATGACTCAAATAAAAACCATTCTCAACGATTCCTATTCTACTAACAAGAGTAGACATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCAAGCTGTTCCTAAATAGCTTCCTTCAAAAGGATTTCTGCTTGCTAGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGATTTAGTTTCTTTTAGATGTTTATGTAACTCATCCAGAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCTAGTATAAATAGTTGCTATCAGCTCTTCCACTGGGAGAGGATTTGCCTGAGATTGTTTAAGCAATTCCCTTAATTGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCAAATTGTGCAAAGGCTTGTAACTCTGTGAATTGAGCTAGTTCCAATTTTGACTACTCTGGAAACAGAATACCCACATTAATAGCGGGTCGAATTTCGGCATTGAATAGATGTGCAGATAACAATATTTGTCCATCTGTAATGGAGATTACATTATTTGGAATATAGGCAGAAATGTCTCCAGATTGAGTCTCAGCTATTGGTAAAGCGGTTGCATACTTCCTTCGCCTCAAAGAGAATTTAGTTTAGCAGCTCTTTCTAAAAGGCTTGAATGCAAATAAAAACATCCCTTGGATAAACCTCACGGCCGGGAGGTCTTCTTAATAGAAGGGACATTTGGCGGTAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGTCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCATATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATTCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCACTCCTCATGGAAAGTAGTTACTACTTGAGCTACAGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTGTGTCAGTCAGTCTATCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCCTATATGGAACGCCTGGAAATTACACTTGGAGCAGGAGATTCAATTAAGTGAGATTCAGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACGACACGACCCAAGTAAGCCTCACTCACGGGCATCTGAGCAAATCTTCCTGTTGCTTTTACAAAACTTACCTCTTGTATCATTAACCCATCGCCCATTAATAGAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTACTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGTGACTTATATACTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTATGAATTTCGTTGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTGGTAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCGCTTCCATTCCAGGACCCGAGAATGCCAATATTAGCACGAATCGTACAGAAATGTAACTCGGTATTCAAACAACTAACCAGGCCTGATTCATTGTCCTTTGTTTTTCAAAATAAAGGGTTTCATTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCATTCTACCTCAGAGTATCCATTCATACGATACTCATTCGCTTCTAGTTTGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTGCGCAATTCTTTTGAATTTCCAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCAAACCAAACATGAATCTTTCGATTCATTTGGCTCTCATGCTCCTTTTTTTATTTTTTCTATATCTATTTCCATATCTTTTTGAAGTAATGAGACTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCCATATAAGACTAGATAAATATTAAGAGGACT
Scaffold20378	Ensembl_Plants	sense_intronic	153734	153807	.	+	.	ID=gene:ENSRNA049470867	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold20378	Ensembl_Plants	LTR	153350	157371	29585	-	.	ID=2131716	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCTGTTGAATGTATCAAAATCAATAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAACCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACATAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCATGGTCTGGTTCGGTTAAGAATGTGCACGGTCTGGTTCGGGATGGGATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGAGGTTATTTCTTGGTTTCATCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGGCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAATGGATGCTCCTATTACACTCATAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAACATTGTATACGTCATTAGTCCGATTTTTGTAGGAACTACCAGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTTTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCAGATGAACCATATAGCCAAGAGAAAACATGAACCAGGATAGAAGAGCTTGCCCAACCCATGAGTAAATATTTCATAGTAGCCTAATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTATTGTAGCCATTTCTGTACATTCAATGTACTCTATGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATAAAGCTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTATGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCTGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTTTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGTCTCTGCCATTCTATGAGTCGCTTCATTTTTGCGTATAGCATCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGAAGCTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTTCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCAGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTATGTGTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATTGGAAATCCTGTATTTTCCATATCCATACGAACGAGTCCTTAGGTTTCCGAAATAGTGTGATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGAACTTGTTCTGAAAAAGTCAAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCAAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTACGAAACTTTCGTTATTGGG
Scaffold10301	Ensembl_Plants	sense_intronic	113615	113693	.	+	.	ID=gene:ENSRNA049470673	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold10301	Ensembl_Plants	LTR	111858	115181	23810	-	.	ID=2131704	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AGATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGAACACTTCTCATAACAAGAATATGCACGGTCTGGTTCGATATGGAATGAACTTATAATCTGATGATCTAGTCGATTCCATGACTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGAAAATAGTAGATGGAAAGAACACTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTGTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCGCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCTGATTTTCCCTATGGACGAATATGCAAGCATGCGTTTCATGCTTGTTTGAGTAAAAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTGGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTTGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACATTTTGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATATGTCATTAGTCTGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGTAAAATGGATCTGTTTATCGTAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGGTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAATTATCTATCTTGGTAGGAGTGGGGATAACATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTTGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGATTAAAACCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTACACATTTGTGTATTGATAAGACCATTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGTTATTTCCATAAGATTCTTCTTTCTTATTCTTCAGCAAGCCCTCTAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTCGAGAAAGATATCGTCTGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACAAAAATGTGCAAGAGGTCTATTTGCCTCTGCCATTCTATGAGT
Scaffold6767	Ensembl_Plants	sense_intronic	16506	16759	.	-	.	ID=gene:ENSRNA049469424	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=CTACGGACTTGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACGTTGTGTTGTTAGTGGAATTCCTTCTAATTCTAAATTAGAGAAAGAGGG	Scaffold6767	Ensembl_Plants	LTR/Gypsy	16554	17024	2930	-	.	ID=2237285	repeat_name=LTR_AC188734.2_15331	repeat_type=LTRs	sequence=AAAAAGTAAGACGGGAGGTGGGGGAGGTAAAAGCTTTTGGATATATTGATTCGGATTGAATTGCAAATACATCAAGGATAGAATCAATTCAATTCTGAATTGCAATAGGCAAGCGAGGTCTCTCAAATAGAGTCGAACTGAACTGCTAGACTACGTTGAGCGATGAACTCAATGATTCAAAAAAAACTAAGAGATGGATGAAATTACACAAGGAATCCTGGTCTCAAAGAAGAGGGAAATGGGGATATGGCGAAATCGGTAGACGCTACGGACTTGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTAC
Scaffold6767	Ensembl_Plants	sense_intronic	29990	30063	.	-	.	ID=gene:ENSRNA049469408	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold6767	Ensembl_Plants	LTR	27062	33721	14888	+	.	ID=2131720	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATATTTAGATAATACTAGATAGAAAGAACACTCGTAAGGAGTCCTATTGAAACCTAGAAATATAGGACTGCTTGCCATCCACACCAGAATAGACAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATAAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAACATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGGGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACAACTGGACTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTAGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCATAAGCGATAAAAGAAAGAAGACCTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCGTTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTATTATAGCCATTTATGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACGTAATAAAATGAGATAGAACCAAGGTTCTTCTCTCGATCGAACAATAGGGCCATTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTATATCTTTTTGATTAGAGGTTGAATCGATCATCAGAAGAAGAATTAAGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAATAGCTCTCTTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATATGAAAGCCATATTACGACCCGGACGATTTTGGGATGCTTCTAATAACCAAAGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTTAATCGGAACTTTCTGCGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCTGAAATAGTGTAACGAAAAAACAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGACAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAATGGAAAACCGCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCTGAATCGAATCTCTTTAGAAAGAGGATCTTTAGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTATCGTTATTGGGTTAGCAATACACTTCACATGTTTCTAGCGATTCACATGGCATCATAAAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAGTGCGATATCTCACACCGGGTAAATCCTTAAACCTTCCTCCTCTTACTAATACTACAGAATGGCCAATACCAGGTATATAAGAAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGATAGATAAGTCACCCTTATTGTACCTTTACAGAACCGTACATGAGATTTTGACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCACCCTGAAGACTAACTAAGACCAATTGAGTCATGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCATTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGTAGTACTATTAGTTACCGATCCCGGCTCTGTGAGTTCTTTCTTCCGTGATGAACTGTCGGCACCAGTCCTACATTTTTTTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCGGGAAGAGGATTGTGCCATGAGAGAAGCAGGTCAACCCGCTTCAAATATGGAACATGGATTCTGGCAATGCAACGGAGTTGGGTCCTCATATCGATCCGAATGAATCAGTCTTTCTACAGAGGTCAATCTTTGCCTATTAGGCAAGAGGATAGCAAGTTCTAAATTCTGTCTCGGTAGGACATGGATTTCTATTACTATGAAATTCATAAATGAAAATGAAGTAGTTAATGGGAGGGCTACCGTTATCCTTTTTCTTGTATGTGTTCCTAAGAGAAGTAATTTGTCCTCATGTTTCGAGGTCTCAAGAAAAGGGCGTGGAAACAGATAGAAACTCTTGAATGGAAATTGAAAAGAAATGTAGCCCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAGGGGCGACCCATATCATCTTGACTTGGTTCTGCTTCCCCTCTTTTTTTAAGAATACCGAGTCGGGTTCTTCTCCTACCAGTATCGAATAGAACATGCTGAACAAGATCTTCTTCATGGAAACCTGCTCGATTTAGATCGGGAAAATCGTACAGATTTTATGAAACCATGTGCGATGGCTCGAATCCATAGTCAATCCTACTTTCGATAGGGACCAGTTGACAATTGAATCCAATTTTCCCATTATTTGACTATCCATAATAGTGCGGAAAGAAAGCCCGGAGGAAGAGTGGCCTTGAGTTTCTCGCCCCTTTGCCTTAGAATTCATTAATTCTCTTTCTCGATGGGACGGGGAAGGGATATAACTCAACGGTAGAGTGTCACCTTGACGTGGTGGAAGACATCAGTTCGAGCCTTATTATCCCTAAACCCAATGTGAGTTTTTTCTATTTTGACTTACTCCCCCGCCACGAGCGAACGGGAATGGATAAGAGGCTTGTGGGATTGACGTGATAGGTAGGGTTCACTATACTGCTGGTGGCAAACTCCAGGCTAATAATCTGAAGCGCATGGATACAAGTTATCCTTGGAGGGAAAGACAATTCCAATCTGCTTTGTCAATGAATAAGGAAGCTATAAGTAATGCAACTATGAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCTAGTGGCGGACGGGTGTGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAATGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCATTGCCGCGTGGAGGTGGAAGGCCTACAGGTCGTCAACTTCTTTTCTTGGAGAAGAAACAATGACGGTATCTAAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGTTAAGATAGAGGATGCAAGCGTTATCCGGAATGATTAGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTTGACAGGCGATGGGAAATACCAAGCTGGAGTACGGGAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGTGACTCGACCCATGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGAGGAGTACGTTCGCAATAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGGATCCT
Scaffold6767	Ensembl_Plants	sense_intronic	97494	97567	.	+	.	ID=gene:ENSRNA049469404	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCAATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTCCAAGATCCACCCTAC	Scaffold6767	Ensembl_Plants	LTR	96338	97863	10634	-	.	ID=2131722	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTATGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATGCATTTCCTTTTTTATAAGGGCTAAAATCACTTATTTTTTTTGGCTTTTTTACCCCATATTGTAGGGTGGATCTTGGAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATTGAATACGGCTTTCCACAAAATTCTATAGGGATCTATGAGATCAAGTACGGAATTCTGTTTACTCACTTTAAATTGAGTATCTGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTGCATATCCATACGATCGAGTCCTTAGGTTTGCGAAATAGTGTAATGGGAAAAGAAGTGCTTCGAATCATTGTTATTTGACTCGGACCTGTTCTAAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATGTAAGAGTTCCGAATCAAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCCGCTCTAGTCCCCTTACAAAACTTTTGTTATTGGGTTAGCCATACACTTCACATATTTCAAGTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGTACTAGAATGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTAATGTCCCTTTACAGAACCGTACATGATATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTTGTTCGAGAGTCTCCACCCTTCTTCCACTCCGTCCCGAAGACTAGCTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACAACTTATAATAAGAAGAAATATTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTCCCTCTTCCTCTATCCCTATCCTCTAGG
Scaffold6767	Ensembl_Plants	sense_intronic	27717	27795	.	-	.	ID=gene:ENSRNA049469391	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=ATGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCTAGGAATCCTCTTTTCGACTCTGAC	Scaffold6767	Ensembl_Plants	LTR	27062	33721	14888	+	.	ID=2131720	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATATTTAGATAATACTAGATAGAAAGAACACTCGTAAGGAGTCCTATTGAAACCTAGAAATATAGGACTGCTTGCCATCCACACCAGAATAGACAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATAAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAACATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGGGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACAACTGGACTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTAGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCATAAGCGATAAAAGAAAGAAGACCTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCGTTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTATTATAGCCATTTATGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACGTAATAAAATGAGATAGAACCAAGGTTCTTCTCTCGATCGAACAATAGGGCCATTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTATATCTTTTTGATTAGAGGTTGAATCGATCATCAGAAGAAGAATTAAGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAATAGCTCTCTTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATATGAAAGCCATATTACGACCCGGACGATTTTGGGATGCTTCTAATAACCAAAGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTTAATCGGAACTTTCTGCGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCTGAAATAGTGTAACGAAAAAACAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGACAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAATGGAAAACCGCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCTGAATCGAATCTCTTTAGAAAGAGGATCTTTAGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTATCGTTATTGGGTTAGCAATACACTTCACATGTTTCTAGCGATTCACATGGCATCATAAAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAGTGCGATATCTCACACCGGGTAAATCCTTAAACCTTCCTCCTCTTACTAATACTACAGAATGGCCAATACCAGGTATATAAGAAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGATAGATAAGTCACCCTTATTGTACCTTTACAGAACCGTACATGAGATTTTGACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCACCCTGAAGACTAACTAAGACCAATTGAGTCATGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCATTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGTAGTACTATTAGTTACCGATCCCGGCTCTGTGAGTTCTTTCTTCCGTGATGAACTGTCGGCACCAGTCCTACATTTTTTTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCGGGAAGAGGATTGTGCCATGAGAGAAGCAGGTCAACCCGCTTCAAATATGGAACATGGATTCTGGCAATGCAACGGAGTTGGGTCCTCATATCGATCCGAATGAATCAGTCTTTCTACAGAGGTCAATCTTTGCCTATTAGGCAAGAGGATAGCAAGTTCTAAATTCTGTCTCGGTAGGACATGGATTTCTATTACTATGAAATTCATAAATGAAAATGAAGTAGTTAATGGGAGGGCTACCGTTATCCTTTTTCTTGTATGTGTTCCTAAGAGAAGTAATTTGTCCTCATGTTTCGAGGTCTCAAGAAAAGGGCGTGGAAACAGATAGAAACTCTTGAATGGAAATTGAAAAGAAATGTAGCCCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAGGGGCGACCCATATCATCTTGACTTGGTTCTGCTTCCCCTCTTTTTTTAAGAATACCGAGTCGGGTTCTTCTCCTACCAGTATCGAATAGAACATGCTGAACAAGATCTTCTTCATGGAAACCTGCTCGATTTAGATCGGGAAAATCGTACAGATTTTATGAAACCATGTGCGATGGCTCGAATCCATAGTCAATCCTACTTTCGATAGGGACCAGTTGACAATTGAATCCAATTTTCCCATTATTTGACTATCCATAATAGTGCGGAAAGAAAGCCCGGAGGAAGAGTGGCCTTGAGTTTCTCGCCCCTTTGCCTTAGAATTCATTAATTCTCTTTCTCGATGGGACGGGGAAGGGATATAACTCAACGGTAGAGTGTCACCTTGACGTGGTGGAAGACATCAGTTCGAGCCTTATTATCCCTAAACCCAATGTGAGTTTTTTCTATTTTGACTTACTCCCCCGCCACGAGCGAACGGGAATGGATAAGAGGCTTGTGGGATTGACGTGATAGGTAGGGTTCACTATACTGCTGGTGGCAAACTCCAGGCTAATAATCTGAAGCGCATGGATACAAGTTATCCTTGGAGGGAAAGACAATTCCAATCTGCTTTGTCAATGAATAAGGAAGCTATAAGTAATGCAACTATGAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCTAGTGGCGGACGGGTGTGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAATGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCATTGCCGCGTGGAGGTGGAAGGCCTACAGGTCGTCAACTTCTTTTCTTGGAGAAGAAACAATGACGGTATCTAAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGTTAAGATAGAGGATGCAAGCGTTATCCGGAATGATTAGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTTGACAGGCGATGGGAAATACCAAGCTGGAGTACGGGAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGTGACTCGACCCATGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGAGGAGTACGTTCGCAATAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGGATCCT
Scaffold6767	Ensembl_Plants	sense_intronic	96719	96795	.	+	.	ID=gene:ENSRNA049469377	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATATCATGTACGGTTCTGTAAAGGGACATTAAGGGTGACTTATCTGTCGACTTTTCC	Scaffold6767	Ensembl_Plants	LTR	96338	97863	10634	-	.	ID=2131722	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTATGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATGCATTTCCTTTTTTATAAGGGCTAAAATCACTTATTTTTTTTGGCTTTTTTACCCCATATTGTAGGGTGGATCTTGGAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATTGAATACGGCTTTCCACAAAATTCTATAGGGATCTATGAGATCAAGTACGGAATTCTGTTTACTCACTTTAAATTGAGTATCTGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTGCATATCCATACGATCGAGTCCTTAGGTTTGCGAAATAGTGTAATGGGAAAAGAAGTGCTTCGAATCATTGTTATTTGACTCGGACCTGTTCTAAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATGTAAGAGTTCCGAATCAAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCCGCTCTAGTCCCCTTACAAAACTTTTGTTATTGGGTTAGCCATACACTTCACATATTTCAAGTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGTACTAGAATGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTAATGTCCCTTTACAGAACCGTACATGATATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTTGTTCGAGAGTCTCCACCCTTCTTCCACTCCGTCCCGAAGACTAGCTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACAACTTATAATAAGAAGAAATATTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTCCCTCTTCCTCTATCCCTATCCTCTAGG
Scaffold6767	Ensembl_Plants	sense_intronic	99653	99732	.	+	.	ID=gene:ENSRNA049469365	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAAT	Scaffold6767	Ensembl_Plants	LTR	98343	100622	16120	-	.	ID=2131723	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TTTGAGTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCGTTGATATTCCTGGTATAGTAGAATTGTTTGATCTTAAAGGGGATCTTCAATAATTTCGCACATTAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTACCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTTGAGGAAGGCCTCCTATGGATTAGAGACATAGGGCTAAAGAGAGAGAGAGAGAGCCAAAAATGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTATATTCATGGAGATATAGAACAACAAATAAGTTATCATGCTTGCATATCCATCATTTCAGTCTCCAATAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATATGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGATTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCTAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTGCCAATAGCCATGAGATGATCATCATAGGGTGATCCTTTTGTCAACGAATGCTCCAATTACACTCGTAATCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTATTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGGCCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCATAGATATCTCTTGGTATATCCAGAAAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCATTAGTACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGTAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCT
Scaffold6767	Ensembl_Plants	sense_intronic	30748	30824	.	-	.	ID=gene:ENSRNA049469360	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTCAAAATCTCATGTACGGTTCTGTAAAGGTACAATAAGGGTGACTTATCTATCGACTTTTCC	Scaffold6767	Ensembl_Plants	LTR	27062	33721	14888	+	.	ID=2131720	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATATTTAGATAATACTAGATAGAAAGAACACTCGTAAGGAGTCCTATTGAAACCTAGAAATATAGGACTGCTTGCCATCCACACCAGAATAGACAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATAAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAACATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGGGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACAACTGGACTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTAGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCATAAGCGATAAAAGAAAGAAGACCTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCGTTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTATTATAGCCATTTATGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACGTAATAAAATGAGATAGAACCAAGGTTCTTCTCTCGATCGAACAATAGGGCCATTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTATATCTTTTTGATTAGAGGTTGAATCGATCATCAGAAGAAGAATTAAGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAATAGCTCTCTTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATATGAAAGCCATATTACGACCCGGACGATTTTGGGATGCTTCTAATAACCAAAGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTTAATCGGAACTTTCTGCGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCTGAAATAGTGTAACGAAAAAACAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGACAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAATGGAAAACCGCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCTGAATCGAATCTCTTTAGAAAGAGGATCTTTAGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTATCGTTATTGGGTTAGCAATACACTTCACATGTTTCTAGCGATTCACATGGCATCATAAAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAGTGCGATATCTCACACCGGGTAAATCCTTAAACCTTCCTCCTCTTACTAATACTACAGAATGGCCAATACCAGGTATATAAGAAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGATAGATAAGTCACCCTTATTGTACCTTTACAGAACCGTACATGAGATTTTGACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCACCCTGAAGACTAACTAAGACCAATTGAGTCATGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCATTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGTAGTACTATTAGTTACCGATCCCGGCTCTGTGAGTTCTTTCTTCCGTGATGAACTGTCGGCACCAGTCCTACATTTTTTTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCGGGAAGAGGATTGTGCCATGAGAGAAGCAGGTCAACCCGCTTCAAATATGGAACATGGATTCTGGCAATGCAACGGAGTTGGGTCCTCATATCGATCCGAATGAATCAGTCTTTCTACAGAGGTCAATCTTTGCCTATTAGGCAAGAGGATAGCAAGTTCTAAATTCTGTCTCGGTAGGACATGGATTTCTATTACTATGAAATTCATAAATGAAAATGAAGTAGTTAATGGGAGGGCTACCGTTATCCTTTTTCTTGTATGTGTTCCTAAGAGAAGTAATTTGTCCTCATGTTTCGAGGTCTCAAGAAAAGGGCGTGGAAACAGATAGAAACTCTTGAATGGAAATTGAAAAGAAATGTAGCCCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAGGGGCGACCCATATCATCTTGACTTGGTTCTGCTTCCCCTCTTTTTTTAAGAATACCGAGTCGGGTTCTTCTCCTACCAGTATCGAATAGAACATGCTGAACAAGATCTTCTTCATGGAAACCTGCTCGATTTAGATCGGGAAAATCGTACAGATTTTATGAAACCATGTGCGATGGCTCGAATCCATAGTCAATCCTACTTTCGATAGGGACCAGTTGACAATTGAATCCAATTTTCCCATTATTTGACTATCCATAATAGTGCGGAAAGAAAGCCCGGAGGAAGAGTGGCCTTGAGTTTCTCGCCCCTTTGCCTTAGAATTCATTAATTCTCTTTCTCGATGGGACGGGGAAGGGATATAACTCAACGGTAGAGTGTCACCTTGACGTGGTGGAAGACATCAGTTCGAGCCTTATTATCCCTAAACCCAATGTGAGTTTTTTCTATTTTGACTTACTCCCCCGCCACGAGCGAACGGGAATGGATAAGAGGCTTGTGGGATTGACGTGATAGGTAGGGTTCACTATACTGCTGGTGGCAAACTCCAGGCTAATAATCTGAAGCGCATGGATACAAGTTATCCTTGGAGGGAAAGACAATTCCAATCTGCTTTGTCAATGAATAAGGAAGCTATAAGTAATGCAACTATGAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCTAGTGGCGGACGGGTGTGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAATGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCATTGCCGCGTGGAGGTGGAAGGCCTACAGGTCGTCAACTTCTTTTCTTGGAGAAGAAACAATGACGGTATCTAAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGTTAAGATAGAGGATGCAAGCGTTATCCGGAATGATTAGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTTGACAGGCGATGGGAAATACCAAGCTGGAGTACGGGAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGTGACTCGACCCATGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGAGGAGTACGTTCGCAATAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGGATCCT
Scaffold6767	Ensembl_Plants	sense_intronic	3035	3112	.	-	.	ID=gene:ENSRNA049469344	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGAAGCCGTATGAAGCTAAGGTTTCATGTACGGTTTTGAAATAGCGGTGGGAACTATGATGTTATCATCGACTATGAT	Scaffold6767	Ensembl_Plants	Retroelement	2611	3223	2597	+	.	ID=2237275	repeat_name=RXX_Gk_DX403548.1_7560	repeat_type=Unknown	sequence=ATCTTATTGTGATAGAAATGAAGAGAAATAAATAAGCTTTAGTTAATGTAATAAATATACCCATTGTCATTTCCAAAATTCCAACTGCTTTATTCATTTGGAAAAAAATCAAAAAAGGAGATATTGGGAATAGATAAATTCCACCCGCCCAAGTAGAGAACTGTTACAAATAAAGAAGAAACTAATAAATTTAGGTAAGAAACAAGATAAAATAAACCATATTTGATACCGGAATATTCAGTTTGGTAACCTGCTACTAATTCTTCCTCCCCTTCTAGTAAATCAAAGGGTAATCTTTCACATTCTGCCATAGAAGAAATTAGAAAAACTAGAAAACCTATAGGCTGACGCCAAATATTCCATCCAAAAAAACGTATTTTGACTGTGCTTCAACTATATCAACTTTACTTGAACTGTTAGATAATCATAGTCGATGATAACATCATAGTTCCCACCGCTATTTCAAAACCGTACATGAAACCTTAGCTTCATACGGCTTCTCTATGATCAGAAAAAGGAAAGGACTGTTTTGTTCCTAGCCCCTAGGGCGTATATATAATTAGATAAAATAAAATAGATTTGAAAGTCCTAAATTAGACCAAAGGTATTCCG
Scaffold5346	Ensembl_Plants	sense_intronic	124160	124243	.	-	.	ID=gene:ENSRNA049468977	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTACAT	Scaffold5346	Ensembl_Plants	LTR	122756	124386	12801	+	.	ID=2151149	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TAGCGGCTCTTTCTAAACGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGGCCGGGAGGTCTTCTTAATAGAAGGGACATTTGGCGGTAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGTCGTTCGCGGTACATAAAATACTCAGCCAGGGATGCTCCCGTATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATTCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCACTCCTCATGGAATGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGAGAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTGTGTCAGCCTGCCTGTCCCCAATAATTAACTCTCGCTGACCGTGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCCTATATAGAACGCCTGGAAATTACACTTGGAGCAGGAGATTCAATTAAGCGAGATTCAGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACGACATGACCCAAGTAAGCCTCACTCACGGACATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTACCTCTTGTATCATCAACCCATCGCCCATTAATAGAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCGTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACAAGCAATCCCATGCCCCACTTGAACTACGCGACTTATATACTCAATCCCTACTTTCCTATTATATTGATCAATACGTTCGCGGAGAATTTATGAATTTCGTCAACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTGGTAAGCAAGGGGAAAAATAATGCCTAAATTCTAAAAGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCTCTTCCATTCCAGGACCTGAGAATGCCAATATTAGCACGAATCGTATAGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGACCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCATTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCATTCTATCTCTGAGTATCCATTCATTCGATACTCATCCACTTCTAGTTCAACTTTCTATAATCGAATCCGATCTTTTTAAAGTTGCTGAATGGTCCCTCTACGCAGTTCTTTTGAATTTCAAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGTAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCATGCTCCTTTTTTATTTTTTATATATCTATTTCCATATCTTTTTTTTAAGTAATGAGACTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCCATAAAAGACTAAATAAATATTAAGAGGACTCTGCTG
Scaffold38557	Ensembl_Plants	sense_intronic	77830	78034	.	-	.	ID=gene:ENSRNA049468539	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=CTACGGACATGATTGTATTGAGCCTTGATATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCAGAACCAAATCCGTGTTTTGAGATAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGACAGCTAGTATTCGTGTCCATCACCAGTGTGACAAGCTAGACCCTTGTAG	Scaffold38557	Ensembl_Plants	LTR/Gypsy	77874	78300	2723	-	.	ID=2237288	repeat_name=LTR_AC188734.2_15331	repeat_type=LTRs	sequence=AAAAAGTAAGACGGGAGGTGGGGGAGATAAAAACTTTTGGATATATTGATTCGGATTGAATTGCAAATACATCAAGGATAGAATCAATTCAATTCTGAATTGCAATAAGCAAGCGAGGTCTCTCAAATAGATTCGAACTGAACTGCTAGACTACGTTGAGTGATGAACTCAATGATTCAATAAAAAAAACTAAGATGGATGAAATTACACATGGAATCCTGGTCTCAAAGAAGAGGGAAATGGGGATATGGCGAAATCGGTAGACGCTACGGACATGATTGTATTGAGCCTTGATATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCAGAACCAAATCCGTGTTTTGAGATAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGACAGC
Scaffold26495	Ensembl_Plants	sense_intronic	46429	46506	.	-	.	ID=gene:ENSRNA049468194	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAAGCTAAGGTTTCATGTACGGTTTGGCAATAGTGGTGGGAGCTGTGATGTTATTATCGACTATGAT	Scaffold26495	Ensembl_Plants	Retroelement	46136	46507	1713	+	.	ID=2237277	repeat_name=RXX_Gk_DX403548.1_7560	repeat_type=Unknown	sequence=GATATGTAGGAAATAGAGAAATTCCACCCGCCTAAGTAAAGAACTGTTAGAAATAAAGAGGAAACTAATTAATAATGATAAGTAAGAAACAAGATAAAAGAAACCATATTTGATACCGGAATATTCGATTTGATAACCTGCAACTAATTCCCCCTCTTGGTAATCTTTCACATTCGGCCAAAGAAGAAATTCTAAAAACTAGAAAGCCTATAGGTTGACGCCAATAGTTCCATAAAAAAACCATATTTTGGTTGTGCTTCAACTATATCAACTGTACTTGAATTGTTAGATAATCATAGTCGATAATAACATCACAGCTCCCACCACTATTGCCAAACCGTACATGAAACCTTAGCTTCATACGGCTCCTC
Pt	Ensembl_Plants	sense_intronic	46622	46875	.	+	.	ID=gene:ENSRNA049468082	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=CTACGGACTTGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACGTTGTGTTGTTAGTGGAATTCCTTCTAATTCTAAATTAGAGAAAGAGGG	Pt	Ensembl_Plants	LTR/Gypsy	46356	46827	3156	+	.	ID=2237286	repeat_name=LTR_AC188734.2_15331	repeat_type=LTRs	sequence=AAAAAGTAAGACGGGAGGTGGGGGAGATAAAAACTTTTGGATATATTGATTCGGATTGAATTGCAAATACATCAAGGATAGAATCAATTCAATTCTGAATTGCAATAAGCAAGCGAGGTCTCTCAAATAGAGTCGAACTGAACTGCTAGACTACGTTGAGTGATGAACTCAATGATTCAAAAAAAACTAAGAGATGGATGAAATTACACAAGGAATCCTGGTCTCAAAGAAGAGGGAAATGGGGATATGGCGAAATCGGTAGACGCTACGGACTTGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACG
Pt	Ensembl_Plants	sense_intronic	33683	33766	.	+	.	ID=gene:ENSRNA049468068	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	Pt	Ensembl_Plants	LTR	32158	41396	75640	-	.	ID=2151179	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TCAAAATATATATCTTTCAAAGATTCACTAAAAAGACAGTTGGCGGGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTTAATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTGTTGTGGATAGGGATCCTGTAAAAACATCTTTTGAGGAATGGGCCAGACCCGGCCATTTCTCAAGAACACTAGCTAAGGGCCCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGTCATACTGGTGATTTGGAGGAGATTTCTCGAAAAGTCTTTAGTGCTCATTTCGGGCAACTTTCCATTATCTTTCTTTGGTTGAGTGGCATGTACTTTCATGGCGCCCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTCACATTGGACCCAGTGCTCAGGTAGTTTGGCCTATAGTAGGGCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATCCAAATAACCTCTGGTTTTTTTCAGCTTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTCTATTGTACTGCAATTGGTGCATTGATTTTTGCAGCGTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCCGCTCCCAAATTGGCCTGGTTCCAAGATGTAGAATCCATGTTGAATCACCACTTAGCGGGATTATTAGGACTTGGGTCTCTTTCTTGGGCGGGGCACCAAATTCATGTATCTTTACCAATTAACCAATTTCTTGACGCTGGGGTGGATCCTAAAGAGATACCACTTCCTCATGAATTTATCTTGAATCGGGACCTTTTGGCTCAACTTTATCCTAGTTTTGCCGAAGGAGCAACCCCTTTTTTCACTTTAAATTGGTCCAAATACGCAGAATTTCTGACTTTTCGCGGAGGACTAGATCCAGTAACCGGTGGTCTCTGGCTGACCGATATTGCGCACCATCATTTAGCTATTGCTATTCTTTTCCTAATCGCAGGTCATATGTATAGGACCAATTGGGGTATTGGCCATGGACTTAAAGATATTTTGGAGGCTCACAAGGGCCCATTTACAGGACAAGGCCATAAGGGTCTTTATGAAATCTTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTATTCTATGCCTCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTCGGTGCTGCTGCACATGCAGCAATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGCGTCCTTAGACACCGCGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATGATACCATGAGTGCTTTAGGCCGTCCACAAGATATGTTTTCGGATACTGCCATACAATTACAACCTATCTTTGCTCAATGGGTACAAAATATCCATGCTACTGCGCCTGGCGTAACAGCTCCTGGTGCAACAACAAGTACTAGCTTAACGTGGGGAGGCGGCGAGTTAGTAGCAGTAGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTAGTCCATCACATTCATGCATTTACCATACATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGGAGTTCCCGTTTGATACCCGATAAAGCAAATCTAGGTTTTCGCTTTCCTTGCGATGGGCCTGGCCGAGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTTTATTCTGGATGTACAATGCAATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATTACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTTCGAGATTTCTTGTGGGCACAGGCATCGCAAGTCATTCAGTCTTATGGTTCTTCATTATCTGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTCATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGCGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACGACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGTGCTGCTGGTCCAGTGAATATTGCTTATTCTGGAGTTTATCAGTGGTGGTATACAATAGGATTACGCACCAATGAGGATCTTTATACTGGAGCTCTTTTTCTATTATTTCTTTCTACGCTGTCCTTAATAGCGGGTTGGTTACATCTACAACCCAAATGGAAACCAAGCCTTTCGTGGTTCAAAAACGCGGAATCTCGTCTCAATCATCATTTGTCAGGACTTTTCGGGGTAAGTTCTTTGGCTTGGACAGGACATTTAGTTCATGTTGCTATTCCCGCATCCAGGGGGGAGTACGTTCGATGGAATAATTTCTTAGATGTATTACCCTATCCCCAGGGGTTGGGACCCCTTTTGACGGGTCAATGGAATCTTTATGCCCAAAACCCTGATTCGAGTAATCATTTATTTGGTACCGCTCAAGGAGCGGGAACTGCCATTCTAACTCTTCTTGGGGGATTCCATCCACAAACGCAAAGTTTGTGGCTGACCGATATGGCTCACCATCATTTAGCTATTGCATTTATTTTTCTCATTGCCGGTCACATGTATCGAACTAACTTCGGAATTGGGCACAGTATTAAAGATCTTTTAGAAGCGCATACTCCTCCGGGGGGTCGATTAGGGCGTGGGCATAAGGGCCTTTATGACACAATCAACAATTCGATTCATTTTCAGTTAGGTCTTGCTCTAGCTTCTTTAGGGGTTATTACTTCCTTAGTAGCTCAACATATGTACTCTTTACCTCCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCACCAATATATTGCAGGGTTCATCATGACAGGGGCTTTTGCTCATGGAGCTATTTTTTTCATTAGGGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCTAGCCTCTTTCTAGGATTCCATACCTTGGGCCTTTATGTTCATAACGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTGATCGAACCTATATTTGCCCAATGGATACAATCTGCTCATGGCAAGACGACATATGGGTTCGATATACTCTTATCTTCAACGAATGGCCCCGCTTTCAATGCGGGTCGAAGCCTATGGTTGCCCGGATGGTTGAATGCTGTTAATGAGAATAGTAATTCGCTTTTCTTAACAATAGGACCTGGGGATTTCTTGGTTCATCATGCTATTGCTCTAGGTTTGCATACAACTACATTGATTTTAGTAAAGGGCGCTTTAGATGCACGCGGTTCCAAATTAATGCCAGATAAAAAGGATTTTGGATATAGTTTTCCTTGTGACGGCCCAGGGCGCGGCGGTACTTGTGATATTTCTGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACTTTTTATTGGCATTGGAAACATATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTATCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTAGCTAATTTAATTCGCTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGCTCACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTCTTGATTGCCTCAACATCAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTTGTACTGTATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTGCCTTTTTAGATTTCTTTTTCTATTTATTTTTCCATCTAGGATTAGAACCGTATACTTGGTAATAATAGCAACGACACATTATGGCAAAAAAAAGTTTGATTCAGAGGGAGAAGAAGCGGCAGAAATTAGAACAGAAATATCATTTGATTCGTCAATCTTTAAAAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAACGAAAATGCGAGAAAAATTGCAATCCCTACCGCGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTTGACCGGAAGACCTAGAGCTAACTATCGACATTTTGGGCTATCCGGACACGTACTTCGAGAAATGGTTTATGAGTGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCTTTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTGTATAAATGGACTATTCTATTTGTATAGATATTGGTAGAGGGGCGTATCCAACCCTCTTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGTATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTGGGGTTGCGGGTTCGATTCCCACTACCGGCTCCATACTCCTTCTTTATGATATATGCATGATATAATATATACATCATGCATTTGTATCTGGATTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTTCTCGGAAGAAGCAAAAAAATAAAAGAAAGAATAAAATATGAAAGAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATACTAAACTAAAAACAAAGAAAACTTTTTTGCATGATTCAAATGAAAAAGCTTTCTCAACGATTCCTATTCTACTAACAAGAGTAGACATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCCAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCGCTTGCTCGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCAGAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGCTATCTGCTCTTCCACTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGCGCTAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCCGCGGATCCTACTCTGGAAACAGAAATACCCACATTAATAGCGGGTCGAATTCCGGCATTGAATAGATCCGCAGATAAGAATATTTGTCCATCTGTAATGGAGATTACATTAGTAGGAATATAGGCGGAAACGTCTCCAGATTGAGTCTCAACTATTGGTAAAGCGGTCATACTTCCTTCGCCTAAAAGAGAATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGGCCGGGAGGTCTTCTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATAGCCCCCTCCTCATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCGTATACGGAACGCCTGGAAATTATACTTGGAGCAGGAGATTCAATTAAGCGAGATTCGGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTTAAGTAATGAGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTCGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTAAACTAAGGACGGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATGGGGTATTATCTGTCCCGATAAATAGATAATTCCAGGAGTAATAAATAGGAGTAAATTAAATAAAGTATTGATATAATTGGAATTGCGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCGAAAGAATTTTTTTTTAAGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATA
Pt	Ensembl_Plants	sense_intronic	88519	88592	.	-	.	ID=gene:ENSRNA049468036	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Pt	Ensembl_Plants	LTR	84690	89542	36399	+	.	ID=2131735	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGA
Pt	Ensembl_Plants	sense_intronic	89291	89367	.	-	.	ID=gene:ENSRNA049468014	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	Pt	Ensembl_Plants	LTR	84690	89542	36399	+	.	ID=2131735	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGA
Pt	Ensembl_Plants	sense_intronic	86178	86256	.	-	.	ID=gene:ENSRNA049467987	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Pt	Ensembl_Plants	LTR	84690	89542	36399	+	.	ID=2131735	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GATAGAGGAGAGCGCCAGGCCCAGATTTCCGGAATACTTCTACGGGGAATGCTCATTGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGA
Pt	Ensembl_Plants	sense_intronic	43105	43179	.	-	.	ID=gene:ENSRNA049467955	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAAC	Pt	Ensembl_Plants	LTR	41420	46153	33348	-	.	ID=2151180	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ATCAAGCTAACTTTATCTTTAAGAAGTTTTAGTATTTTTTTATTTTTATAAGTATAACTTCAAATTTAGAACTAGTTAATAGCTAAGATTAATAACTAATATCTGAGATTTTACGGATTTCCTATACTATACCTATTTCTATTTGTTACACTATTTCCGTTATGTAAGCCCACTTAGCTCAGAGGTTAGAGCATCGCATTTGTAATGCGAGGGTCATCGGTTCAAATCCGATAGTCGGCTTTTTTTTTTTCTCTATCGATGTTCTACGAACAAGAATCTCTTTTTTTCCGAATTAAATGGAGAATCCAGGATCTTTTATGTTTTTTACCTTACAATTTTGCTAGATACAAAACAATAAAATAAATAATATATATACAAAAAATAAAGATTTTGATGAAATTCCATTTTTTTGGGTACTTTAGTTGATTTTACTCTGTTTATCCTGTAGTTTAATTCAGTTTTAATTTCGATGTATTCTGTAATGTAAATACAATGAAATTAATTGTGTAAAATGAAATTTCAATAAAATAAAAAAGGAGTCTTCATGTCCCGTTATCGAGGACCTCGTTTAAAAAAAATACGCCGTCTGGGAGCTTTACCAGGACTCACTAGAAAAACACCTAAATCCGGAAGTAATCTTAAAAAAAAATTCAATTCTGGGAAAAAGGAGCAATATCGTATTCGTCTTCAAGAAAAACAGAAATTGCGTTTTCATTATGGTCTGACAGAACGACAATTACTTAGATATGTACATATCGCTGGAAAAGCAAAAAGGTCAACAGGCCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAATATCCTTTTTCGATTGGGTATGGCTTCAACCATTCCTGGGGCCCGCCAATTAGTCAACCATAGACATATTTTAGTTAATGGTCGTATAGTCAATATACCAAGTTTTCGTTGCAAACCCCGAGATATTATTACTACGAAAGATAACCAAAGATCAAAAGGTCTGGTTCAAAATTATATTGCTTCATCGGACCCGGGGAAATTGCCAAAGCATTTGGCGATTGACACGTTGGAATATAAAGGACTAGTAAATAAAATCCTAGATAGGAAGTGGGTCGGTCTCAAAATAAATGAGTTGTTAGTTGTAGAATATTACTCTCGTCAGACTTGAACTTAACGAAAAAAGGAAAGGTTCATAGAATTTTCTTCCCCTTCCCCTTTCCCCGAACTAAATCGCCCTAAGACCATTACCATTAATTTGTATTTTCCCATCAACTAGCTAAAATTGATTAACCCTAGGATTAGGATCCTTTTTTCTTTTTTCCTCTATGTGTATTTTACATACCACAGTAATTTGCTATAGAGAATTTCTAATTTCTATTAAATCAAAATAAGATAATATAAGATATTATTGCTGGAAAAAATTGTTATTTGATTTGATACATTGTGATCCTTAACGTTGATGAATTAAGAAAAACGGAAAGAGAGGGATTCGAACCCTCGGTAAACAAAAGTCTACATAGCAGTTCCAATGCTACGCCTTGAACCGCTCGGCCATCTCTCCTACATAACTTATTATGGAAAATAAACTGAGTGAATAGCGAGTTTTCTTATTCCTGCAGTACAGGTACAACCGCAACCACTCGGGGGTTCCATAGTTCTATTGGAAAAATTCCTTTTGATCTAAGTGGAAGGATACAGGATTTTTTACTAGAAATTGCGCTCGCTATAAAAAAAAAGTTTTAATTTGGGTTTTCCCGCAACTAAAGAAAAAGAAAATGGAAGAATTCTTCTTATTGCATAATAAAATAAAGAAACCTTAGAATTCCGTTTGCATAAGATACGCTACACCATACTATCGAAATCAAAAATAGGGTATGAGACAATTAATAACTTTGAAAACACGAAATAGTTGATAACATAAGTTGTTGTTCAGAAATAGCAAAGTGGAATGAAATCCAGTCTTAGTCAAATATTTCATATCTCTTCGTGTCCAAGCAGAAGGAAAAGGATACAATTTGAGCTGAGCGGAAAATCCATATCTCTATCTCTCTTATCCATTTAAAGCATATGGATTTAGAGTAGAGCATATGGATCAATCTATTTATAATTATAAGAATCGAATGTGTTTGTTTTTATGTTATTTTGTGAAGGAATGAAAACAATTCTATATAGAATGGGTTGGGAATTATGCCTAGATCCCGTGTAAATGGAAATTTCATTGATAAGACCTCCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCAGGAGAAAAAAAGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGCTTTTTTTTAGCCCTACCTATACCTCAGTCTTACGAAAAAGAGAGGGGGTTGGCATAGAGAGAACCAAATTTGTAAAGCAAACAAACCCACGCTTCGGGAAGGTGAGGCGAACTAACAATTCCTTCCGTCGTGTATCCTCGATTGATGCGGCTTCAGATACTTCAATTGTAGATTTGAGTATTGAGCGAAAGGTTACACCTACAGGATATGGTATGGTATGGATTACAGGCCAATCCTACTCTATTAGTATCCGTAGGCAGCATAGGGGAGAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTACCCCTTTCCTGATCGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAGGTTTGTACTTTGGATACCCCTATAACCATCAAAGATCGTTGAAGTAGCTAATTCCTCTAAATAGGAGGCGTTGAGAACAAAGAAATTATTGGAGCTATCGTTTTCCTCTAGCATTAATAGAATTCATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTTGGAAAAATACCAGCCCCTTTCGGTTCATAATGAGACGGGACTAATTCTATTTTGATTCTATAGATTATTTCGCTTAGTACTATTATGTACAGAAGGGAGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAACGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTCTTACCGCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAAGAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAAAGGGCTTTCTACATAGGGATCGTAAAAACAACGATTTTTCCCTATCAGCTGTAGGAAGGAAGGACACTTCACGAGAATCAAAAAACGAAGAAAGTATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATACAACTAAAAAAAACTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTAAGTTCTTTTTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAAACGGGATAGTTACCTTTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCGGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATTTGAATAAGACCATGCTCCTTCTTTACCATTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGTAAGATCGAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTTATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAAGTAATAAACTGAATAAAAAGAGGGGGCAATCTAAATATTGCTAATATATTAGGACCATCTTATTAATAATTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAAAAATACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAATATTTGTTTTTCAAGATAAACAATGTCCGTTAGGCACCTAATCTTTATGTCATAATAGACCCGAACACTTGCCTCGGATTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAAAAATAGAAGGATGGTAGATAGTAAAGAAAAGAACTAATCACAATATCTATCTTTCAA
Pt	Ensembl_Plants	sense_intronic	77313	77391	.	-	.	ID=gene:ENSRNA049467949	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTTTGCAGTAGAGATGGAACTAAGAAAGAGAACCATCGACTATAAC	Pt	Ensembl_Plants	LTR/Copia	77370	77419	265	-	.	ID=2238444	repeat_name=LTR_Gm_16_5235	repeat_type=LTRs	sequence=ATTTACATGCTTTCTCATTCCATTCGCGAGGAGCTGGATGAGAAGAAAC
Pt	Ensembl_Plants	sense_intronic	111558	111635	.	-	.	ID=gene:ENSRNA049467933	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGAAGCCGTATGAAGCTAAGGTTTCATGTACGGTTTTGAAATAGCGGTGGGAACTGTGATGTTATCATCGACTATGAT	Pt	Ensembl_Plants	Retroelement	111134	111750	2879	+	.	ID=2237276	repeat_name=RXX_Gk_DX403548.1_7560	repeat_type=Unknown	sequence=ATCTTATTGTGATAGAAATGAAGAGAAATAAATAAGCTTTAGTTAATGTAATAAATATACCCATTGTCATTTCCAAAATTCCAACTGCTTTATTCATTTGGAAAAAATCAAAAAAGGATATATAGGGAATAGATAAATTCCACCCGCCCAAGTAGAGAACTGTTACAAATAAAGAAGAAACTAATAAATTTAGGTAAGAAACAAGATAAAATAAACCATATTTGATACCGGAATATTCAGTTTGGTAACCTGCTACTAATTCTTCCTCCGCTTCTGGTAAATCAAAGGGTAATCTTTCACATTCTGCCAAAGAAGAAATTAAAAAAACCAGAAAACCTATAGGCTGACGCCAAATATTCCATCCAAAAAAACCGTATTTTGACTGTGCTTCAACTATATCAACTGTACTTGAACTGTTAGATAATCATAGTCGATGATAACATCACAGTTCCCACCGCTATTTCAAAACCGTACATGAAACCTTAGCTTCATACGGCTTCTCTATGATCAGAAAAAAGAAAGGACTGTTTTGTTCCTAGCCCCTGGGGCGTAGATAGAATTAGATAAAATAAAATAAATAGATTTGAAAGTCCTAAATTAGACCAAAGGAATTCCG
Scaffold13377	Ensembl_Plants	sense_intronic	67522	67605	.	+	.	ID=gene:ENSRNA049467763	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	Scaffold13377	Ensembl_Plants	LTR	67308	74523	58828	-	.	ID=2151195	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TCTCTTTCTTGGGCGGGGCACCAAATTCATGTATCTTTACCAATTAACCAATTTCTTGACGCTGGGGTGGATCCTAAAGAGATACCACTTCCTCATGAATTTATCTTGAATCGGGACCTTTTGGCTCAACTTTATCCTAGTTTTGCCGAAGGAGCAACCCCTTTTTTCACTTTAAATTGGTCCAAATACGCAGAATTTCTGACTTTTCGCGGAGGACTAGATCCAGTAACTGGTGGTCTTTGGCTGACCAATATTGCACACCATCATTTAGCTATTGATATTCTTTTCCTAATCGCAGGTCATATGTATAGGACCAATTGGGGTATTGGCCATGGACTTAAAGATATTTTGGAGGCTCACAAGGGCCCATTTACAGGACAAGGCCATAAGGGTCTTTATGAAATCTTAACAACGTCATGGCATGCTCAATTATCTCTTCACCTAGCTATGCTAGGCTCTACAACAATTGTTGTAGCTCATCATATGTATTCTATGCCTCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTCGGTGCTGCTGCACATGCAGCAATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGCGTCCTTAGACACCGCGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATGATACCATGAGTGCTTTAGGCCGTCCACAAGATATGTTTTCGGATACTGCCATACAATTACAACCTATCTTTGCTCAATGGGTACAAAATATCCATGCTACTTCGCCTGGCGTAATAGCTCCTGGTGCAACAACAAGTACTAGCTTAACATGGGGAGGCGGTGAGTTAGTAGCAGTAGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTTAGTCCATCACATTCATGCATTTACCATACATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGTTCAGAGTTCCCGTTTGATACCTGATAAAGCAAATCTAGGTTTTCGCTTTCCTTGCGATTGGCCTGGCCGAGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTTTATTCTGGATGTACCATGCAATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATTACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTTCGAGATTTCTTGTGGGCACAGGCATCGCAAGTCATTCAGTCTTATGGTTCTTCATTATCTGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCATGGTTATTGGCAAGAACTCATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGCACTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCATGACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCCAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCATCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTAAAGAATGTCTTTATCAGAACATTTTTGCTCCTCACTTTGGGAAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGTGCTGCTGGTCCGGTGAATATTGCTTATTCTGGAGTGTATCAGTGGTGGTATACAATAGGATTACGCACCAATGAGGATCTTTATACAGGAGCTCTTTTTTATTATTTCTTTCTATGCTGTCCTTAATAGCGGGTTGGTTACATCTACAACCCAAATGGAAACCAAACCTTTCGTGGTTCAAAAACGCGGAATCTCGTCTCAATCATCATTTGTCAGGACTTTTCGGGGTAAGTTCTTTGGCTTGGACAGGACATTTAGTTCATGTTCCTAGTCCCGCATCCAGGGGGAGTACGTTCGATGGAATAATTTCTTAGATGTATTACCCTATCCCCAGGGGTTGGGACCCCTTTTGACGGGTCAATGGAATCTTTATGCCCAAAACCCTGATTCGAGTAATCATTTATTTGGTACCGCTCAAGGAGCGGGAACCACCATTCTAACTCTTCTTGGGGGATTCCATCCACAAACACAAAGTTTGTGGCTGACCGATATGGCTCACCATCATTTAGCTATTGCATTTATTCCTCTCATTGCCGGTCACATGTATCGAACTAACTTCGGAATTGGGCACAGTATTGAAGATCTTTTAGAAGCATACTCCTCTGGGGGGTTGATTAGGGCGTGGGCATAAGGGCCTTTATGACACAATCAACAATTCGATTCATTTTCAGTTAGGTCTTGCTCTAGCTTCTTTAGGGGTTATTACTTCCTTAGTAGCTCAACATATGTACTCTTTACCTCCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCACCAATATATTGCAGGGTTCATCATGACAGGGGCTTTTGCTCATGGAGCTATTTTTTCATTAGGGATTACAATTCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATGTCTCATTTAAGTTGGGCTAGCCTCTTTCTAGGATTCCATACCTTGGGCCTTTATGTTCATAACGACGCCATGCTTGCTTTTGGTAATCCAGAAAAGCAAATCTTGATCGAACCTATATTTGCCCAATGGATACAATCTGCTCATGGCAAGACGACATATGGGTTCGATATACTCTTATCTTCAACGAATGGCCCCACTTTCAATGCGGGTCGAAGCCTATGGTAGCCCAGATGGTTGAATGCTGTTAATGAGAATAGTAATTCGCTTTTCTTAACAATAGGACCTGGGGATTTCTTGGTTCATCATGCTATTGCTCTAGGTTTGCATACAACTACATTGATTTTAGTAAAGGGCGCTTTAGATGCACGCGGTTCCAAATTGATGCTGGATAAAAAGGATTTTGGATATAGTTTTCCTTGTGACGGCCCAGGGCGTGGCGGTACTTGTGATATTTCTGCTTGTGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACATTGGGTGGGTTAGTTTTTATTGGCATTGGAAACATATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCACTTATTTGATCGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATAAAATCCTTTTGGGATGAATAGTTTATCGGTATTGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATATTCTTAATTTCCTGGCAGGGGTATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTAGCTAATTTAATTCGCTGGAGAGATAAGCTCGTGGCTCTTTCCATTCTGCAAGCAAGATTGGTTGGATTAGCTCACTTTTCCGTGGGTCATATATTCACTTATGCAGCTTTCTTGATTGCCTCAACATCAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTTGTACTGTATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTGCCTTTTTAGATTTCTTTTTCTATTTATTTTTCCATCTAGGATTAGAACCGTATACTTGTTAATAATAGCAATGACACATTATGGCAAAAAAAAAGTTTGATTCAGAGGGAGAAGAAGCGGCAGAAATTAGAATAGAAATATCATTTGATTCATCAATCTTTAAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAACGAAAATATGAGAAAAATTGCAATCCCTACCGCGTAATAGTGCATCTACACGCCTTCATCGACGTTGTTTTTTGACTGGAAGACCTAGAGCTAACTATTGACATTTTGGGCTATCCGGACACGTACTTCAGGAAATGGTTTATGATTGTTTGTTACCGGGTGCAACACGATCCAGTTCGTAAGGATAAAATACCCTTTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTGTATAAATGGCCTATTCTATTTGTATAGGTACTGGTAGAGGGGCGTATCCAACCCTCTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGCATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTGGGGCTGCGGGTTCGATTCCCACTACCGGCTCCATATTCCTTCTTTATGATATATGCATGATATAGTATATACATCATGCATTTGTATCTGGATTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTTCTCAGAAGAAGAAAACAAATAAACGAAAGAATAAAATATGAAAGAAAAGCGTCCATTGTGTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATACTAAACTAAAAACAAAGAAAACTTTTTTGCATGATTCAAATGAAAACTCTTTCTCAACGATTCCTATTCTACTAACAAGAGTAGACATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCCAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCGCTTGCTCGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCAGAAATTTATTTACCGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGTTATCTGCTCTTCCACTGGGAGAGGATTTGCTTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGAGCTAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTCAAGCCGCAGATCCTACTCTGGAAACAGAAATACCCACATTAATAGCGGGTGGAATTCCGGCATTGAATAGATCCACAGATAAGAATATTTGTCCATCTGTAATGGAGATTACATTAGTAGGAATATAGGCGGAAACGTCTCCAGATTGAGTCTCAACTATTGGTAAAGCAATCATACTTCCTTCACCTAAAAGAGAATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATTAGCCTCACGGCCAGGAGGGCTTCTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCATTCGTGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGGTATGGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCCCGCCTGATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTCTTGATTGAGAATTGTATCTGTGGCTACTACTGTTTTGCCAATCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAAAGGTTCGTATACAGAACGCATGGAAATTATACTTGTAGCAGGAGATTCAATTCCGCGAGATTCGGAAGCTATAATTTCCCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACAACATCACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTATTCCTATTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCTATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCTCTTCCATCCAGGGACCCGAGAATGCTAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTATCGGACTTGATTCATTGCCCGTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGATTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTTGACTTTCTGTAATCGAATCCAAGATTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCAAATAATACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTATAGCTATTTCCATATCTTTTTTAAGCAATGAGCCTATCCTCTATCGTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGATGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTCATTTGCCCTCTAGTTAATAATTTCAATTTCATTA
Scaffold31625	Ensembl_Plants	sense_intronic	71772	71855	.	+	.	ID=gene:ENSRNA049466658	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	Scaffold31625	Ensembl_Plants	LTR	70262	80645	79787	-	.	ID=2151184	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=AAAAAAACTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATACTAAGTTAATTTTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAACCGGGATAGTTACCTTTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGAATATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTTTCAAGTATGGTTCTTAGGGAAGGAAATTCCTATTCGGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCAGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCAGGAAATTATATTGAAGCATAGAACTGGTTGAAGATTACGAAGCGCTTTGAATTTGAAGAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTTTTGATCCATTAATCAAATAAATTAGTTCGTAAGATCGAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTTATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAAGTAATAAAGTGAATAAAAAGCGGGGGCAATCTAAATATTGCTAACATATTAGGACCATCTTATTAATAATTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAAAATACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAATATTTGTTTTTCAAGATAAACAATGTCCGTTAGGCACCTAATCTTTATGTCATAATAGACCCGAACACTTGCCTCGGATTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAAAATAGAAGGATGGTAGATAGTAAAGAAAAGAACTAATCACAATATCTATTGTTCAAAATCTATCTTTCAAAATATATATCTTTCAAAGATTCACTAAAAAGAAAGTTGGCGGGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTTAATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTGTTGTGGATAGGGATCCTGTAAAAACATCTTTTGAGGAATGGGCCAGACCCGGCCATTTCTCAAGAACACTAGCTAAGGGCCCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGTCATACTAGTGATTTGGAGGAGATTTCTCGAAAAGTCTTTAGTGCTCATTTCGGGGAACTTTCCATTATCTTTCTTTGGTTGAGTCTCATGTACTTTCATGGCGCCCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTCACATTGGACCCAGTGCTCAGGTAGTTTGGCCTATAGTAGGGCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATCCAAATAACCTCTGGTTTTTTCAGCTTTGGCGAGCATCTGGAATAACTAGTGAATTACAATTCTATTGTACTGCAATTGGTGCATTGATTTTTGCAGCGTTAATGCTTTTTGCTAGTTGGTTCCATTATCACAACGCCGCTCCCAAATTGGCCTGGTTGCAAGATGTAGAATCCATGTTGAATCACCACTTAGCGGGATTATTAGGACTTGGGTCTCTTTCTTGGGCGGGGCACCAAATTCATGTATCTTTACCAATTAACCAATTTCTTGACGCTGGGGTGGATCCTAAAGAGATACCACTTCCTCATGAATTTATCTTGAATCGGGACATTTTGGCTCAACTTTATCCTAGTTTTGCTGAAGGAGCAACCCCTTTTTCACTTTAAATTGGTCCAAATACGCAGAATTTCTGACTTTTCGTGAAGGACTAGATCCAGTAACCGGTGGTCTCTGGCTGACCGATATTGCGCACCATCATTTAGCTATTGCTATTCTTTTCCTAATCGCGGGTCATATGTATAGGACCAATTGGGGTATTGGCCATGGACTTAAAGATATTTTGGAGGCTCACGAGGGCCCATTTACAGGACAAGGCCATAAGGTTCTTTATGAAATCTTAACAACGTCATGGCGTGCTCAGTTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTATTCTCTGCCTCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTCGGTGCTGCTGCACATGCAACAATTTTTATGGTAAGAGAGTATGATCCAACTACTCGATACAAATGATCTATTAGATTGCGTCCTTAGACACCGCGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATGATACCATGAGTGCTTTAGGCTGTCCACGAGATATGTTTTCGGATACTGCCATACAATTACAACCTATCTTTTCTCAATGGGTACAAAATATCCATGCTACTGCGCTTGGCGTAACAGCTCCTGGTGCAACAACAAGTACTAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTAGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTAGTCCATCACATTCATGCATTTACCATACATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGGAGTTCCCGTTTGATACCCGATAAAGCAAATCTAGGTTTTCGCTTTCCTTGCGATGGGCCTGGCCGAGGGGGAACATGTCAAGTATCCGCCCGGGATCATGTTTTCTTAGGTTTATTCTGGATGTACAATGCAATTTTGGTAGTCATTTTCCATTTCAGTTGGAAAATGCGGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATTATAGGGGGAAACTTTGCACAGAGTTCCATTATGATTATTGGGTGGCTTCGAGATTTCTTGTGGGCACAGGCATCGCAAGTCATTCAGTCTTATGGTTCTTCATTATCTGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTCATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGCGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACGACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTTTGGAAGCCTTTAATCAAGGAGGTGCTCCTGGTCCAATGAATATTGCTTATTCTGGAGTTTATCAGTGGTGGTATACAATAGGATTACGCACCAATGAGGATCTTTATACTGGAGCTCTTTTTCTATTATTTCTTTCTACGATGTCCTTAATAGCGGGTTGGTTACATCTACAACCCAAATGGAAACCAAGCCTTTCGTGGTTCAAAAACGCGGAATCTCGTCTCAATCATCATTTGTCAGGACTATTCGGGGTAAGTTCTTTGGCTTGGACAAGACATTTAGTTCATGTTGCTATTCCCGCATCCAGGGGGAGTACGTTCCATGGAATAATTTCTTAGATGTATTACCCTATCCCCAGGGGTTGGGACCCCTTTTGACGGGTCAATGGAATCTTTATGCCCAAAACCCTGATTTGAGTAATCATTTATTTGGTACTGCTCAAGGAGCGGGAACTTCCATTCTAACTCTTCTTGGGGGATTCCATCCACAAACACAAAGTTTATGGATGACCGATATGGCTCACCATCATTTAGCTATTGCAATTATTTTTCTCATTGCCAGTCACATGTATCGAACTAACTTCGGAATTGGGCACAGTATTAAAGATCTTTTAGAAGAGCATACTCCTCCGGGGGGTCGATTAGGGCGTGGGCATAAGGGCCTTTATGACACAATAAACAATTCAATTCATTTTCAGTTAGGTCTTTCTCTAGCTTCTTTAGGGTAGGTCAACATATGTACTCTTTACCTCCTTATGCATTGATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCATCAATATATTGCAGGGTTCATCATGACAGGGGCTTTTGCTCATGAAGCTATTTTTTCATTAGGGATTACAATCCGGAACAGAATGAGGATAATGTATTGGTAAGAATGTTAGACCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCTAGCCTCTTTCTAGGATTCCATACCTTGGGCCTTTATGTTCATAACGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTGATTGAACCTATGTTTGCCCAATGGATACAATCTGCTCATGGCAAGACGAGATATACTCTTATCTTCAACGAATGGCCCCTCTTTCAATGCGGGTCAAAGCTTATGGTTGCCCGGATGGTTGAATGCTGTTAATGAGAATAGTAATTCTCTTTTCTTAACAATAGTACCTGGGGATTTCTTGGTTCATCATGCTATTGCTCTAGGTTTGCATACAACTACATTGATTTTAGTAAAGGGCGCTTTAGATGCATGCGGTTCCAAATTAATGCCAGATAAAAAGGATTTTGGATATAGTTTTCCTTGTGACGGCCCAGGGCGCGGCGGTACTTGTGATATTTCTGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACTTTTTATTGGCATTGGAAACATATCACATTATGGCAGGGCAATGTTTCAAAATTTAATGAATTCTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTATCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTAGCTAATTTAATTCGCTGTAGAGATAAGCTTGTGGCTCTTTCCATTATGCAAGCAAGATTGGTTGGATTAGCTCACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTCTTGATTCCCTCAACATCAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTTGTACTATATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTGCCTTTTTAGATCCCTTTTTCTATTTATTTTTCCATCTAGGATTAGAACCGTATACTTGGTAATAATAGCAATGACACATTATGGCAAAAAAAAGTTTGATTCAGAGGGAGAAGAAGCGGCAGAAATTAGAACGGAAATATCATTTGATTCATCAATCTTTAAAAAAAGATAATAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAGGAAAACGCGAGAAAAATTGCAATCCCTACCGCGTAATAGTGCACCTACACGCCTTCATCGACGTTGGTTTTTGACCGAAGACCTAGAGCTAACTATCGACATTTTGGGCTATCCGGACACGTACTTCGAGAAATGGTTTATGAGTGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCTTTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTGTATAAATGGACTATTCTATTTGTATAGATATTGGTAGAGGGGTGTATCCAACCCTCTTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGCATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTGGGGTTGCGGGTTCGATTCCCACTACCGGCTCCATACTCCTTCTTTATGATATATGCATGATATAATATATACATCATGCATTTGTATCTGGATTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTTCTCGGAAGAAGCAAAAAATAAAAGAAAGAATAAAATATGAAAGAAAGGCGTCCATTGTCTAATGGATAGGACAAAGGTCTTCTAAACCTTTGGTATAGGTTCAAATTCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATACAAAACTAAAAACAAAGAAAACTTCTTTGCAAGATTCAAATGAAAAAGCTTTCTCAATGATTCCTATTCTACTAACAAGAGTAGACATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCTAGCTGTTCCTGAATAGTTTCCTTCAAAAAGATTTCTGCTTGCTCGGTGAATGTCTTGCTAGTAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCAGAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGCTATCTGCTCTTCCACTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGCGCTAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCCGCGGATCCTACTCCGGAAACAGAAATACCCACATTAATAGCGGGTCGAATTCCGGCATTGAATAGATCCACATATAAGAATATTTGTCCATATGTAATGGAGATTACATTAGTAGGAATATAGGCGGAAACGTCGCTAGATTGAGTCTCAACTATTGGTAAAGCGGTCATACTTCCTTCGCCTAAAAGAGAATTTAATGTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATCAGCCTCACGGTCGGGAGGTCTTCTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGTCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTGTAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCTTTTCAGCTACCACAATAGTGTATTCCATGGCCCCCTCCTCATGGAAAGGAGTTACTACTTGAACTATGGAGGATGCTCTTTGACCGATAGCTACATAAACACAGATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTATCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGTTCATCGAATCGATAGCCATAAGCCCTGTTTGAAGAGGTTCGTATACAGAACGCCTGGAAATTATACCTGGAGCAGGAGATACAATTAAGCGCGATTCGGAAGCTATAATTTCGCCTTTCACGTCAATAGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCTTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAAAGAAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGATATTATTTCACCAAGACCTATAATACGAGCAATCCCATCGCCCACTTGAACTATGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTCAATACGTTCACGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTATGTAATCGAATCCGAGATTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTAAATTTCGAATAGTACCCAAGATCCTTTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTCTATAGCTATTTCCATATCTTTTTTTAAGTAATGAGACTATTCTCTATCTTCTTTTTTATGTTTATATTTCAATATAGCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTTCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCTCTCTAGTTAATAATTTGAATTTCATTAAGAAAAACTAACTAAATAATGGAAAATGAAAATAAATAGAATTATTTTTATTTTTTTCTTCAAATCCAAAAACTTGTCTCTTTTTTATACATAGGTCGTCGATTCGTCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTCCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTCGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCCTGCACCCTTATCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGTCGGATAGATCCAATCTATTCTTAAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATGAAGCCTGAAACTGCCAACGGGTGGCCAGTGAGCTAAAAAAACAAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAATGTTTTTCGATCACTTACTTCACTCGCCCTTTTTTGATCGTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGATGAAAGACTTCCTTTGTAGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTAAACTAAGGATGGGAAATAAGAAGGTGAGCATATCTTCTAAATTAACAATACTCAACTCAGCCCTTCCTAGAATGGGGTATTATCTGTCCTGATAAATAGATAATTCTAGGAGTAATAAATAGGAGTAAATTAAATAAAGTATTGATATAATTGGAATTGCGGAAGCAAATACCAATTTACTAAAAAAATAAAAAAGTATCTAATCAAAATCGAAAGATTTTTTTTAAGATTAAACAAAACGGTTCGCAAATAAAAGCGCTAGTGCCACAACTAGTCCATAAATTATTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACTTCGTATTTTACCTTCTGCTTCTGGCTCTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATA
Scaffold31625	Ensembl_Plants	sense_intronic	103574	103652	.	-	.	ID=gene:ENSRNA049466644	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold31625	Ensembl_Plants	LTR	103392	103736	2721	+	.	ID=2131744	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TGCTTGTTTGAGTATTAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCATAAGAAGATGCCATTCATTTGATGAGAAATAAAAAGGAATATCAAGAATTCGTGTGGCAGAAGCTGAAGCAGCTACTTTCGATGTAACACAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTT
Scaffold6486	Ensembl_Plants	sense_intronic	31727	31800	.	+	.	ID=gene:ENSRNA049466513	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold6486	Ensembl_Plants	LTR	31031	35402	32172	-	.	ID=2131745	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTTATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAAACCTAGCAGCTAAAAGAGGGTATCCTGAGTAATTGCAAGAATGGGCTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTATTAATCCTTAACTTTTCGAGGAATCCTTCATCAATGGTTGTGAATGACTGAATTTTTCAATCCTTTTGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTTGTTCCCAATAGCCATGAGATGATCATCTTAGTGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACTCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACCATAAACTTTTGGTAAAAGTTTTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTAAGAAACTTTCGTTATTGGGTCCTTCTCTTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAATAATCTACAACGCACTAGAACGCCCATGTTGATGATTCTTTACTGCGACTGCATCCAGCTCGAATAATGCGATATCTCACACCGAGTTCAAAGATACTTAACCCTTCCTCCTTTTACTAATACTACGGAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTGATTTCAAATCCAGAAGTGAATCGTACTAATTTCCTTTATGTAAGGCAGAGTTGGGTTTTGGGGGTTGATAGTGGAAAAGTCGACAGAGAA
Scaffold6486	Ensembl_Plants	sense_intronic	34063	34141	.	+	.	ID=gene:ENSRNA049466503	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold6486	Ensembl_Plants	LTR	31031	35402	32172	-	.	ID=2131745	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTTATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAAACCTAGCAGCTAAAAGAGGGTATCCTGAGTAATTGCAAGAATGGGCTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTATTAATCCTTAACTTTTCGAGGAATCCTTCATCAATGGTTGTGAATGACTGAATTTTTCAATCCTTTTGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTTGTTCCCAATAGCCATGAGATGATCATCTTAGTGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACTCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACCATAAACTTTTGGTAAAAGTTTTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTAAGAAACTTTCGTTATTGGGTCCTTCTCTTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAATAATCTACAACGCACTAGAACGCCCATGTTGATGATTCTTTACTGCGACTGCATCCAGCTCGAATAATGCGATATCTCACACCGAGTTCAAAGATACTTAACCCTTCCTCCTTTTACTAATACTACGGAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTGATTTCAAATCCAGAAGTGAATCGTACTAATTTCCTTTATGTAAGGCAGAGTTGGGTTTTGGGGGTTGATAGTGGAAAAGTCGACAGAGAA
Scaffold35015	Ensembl_Plants	sense_intronic	82363	82436	.	+	.	ID=gene:ENSRNA049465859	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold35015	Ensembl_Plants	LTR	81032	83091	13066	-	.	ID=2131746	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GTTTGTTTCGAGAAAGATATCATCTAATTCTCCTTCTATTGATTCTTTTCTGACCGAGATGTACAGATCCGTGTGTCTACATACATAGATTCTGGTCATGGATTAACGAAAATGTGCAAGAGATCTATTTGCCTCTGCCATTCTACGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTATGTATTGCTTGACGTAACACCAATAGCTGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGACTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAGAATTTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTTGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATGTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATATATGAGATCGAGTATGGAATTCTATTTACTCACTTTAAATTGAGTATCGTGTCCCTCCTTTTCCCGCTAGGACCGGAAATCCTGTATTTTCCATATCCATACGATCGAGACCTTAGGTTTCTGAAATAGTGTAATGGAAAAAGAAGTGCTTCAAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGAACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGACTCCTCGGTTAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACAG
Scaffold35015	Ensembl_Plants	sense_intronic	99073	99151	.	+	.	ID=gene:ENSRNA049465842	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold35015	Ensembl_Plants	LTR	97466	99375	14581	-	.	ID=2131747	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TATCCGATTTTCCCTATGGATGAATATGCAAGCATATGTTTCATGCTTGTTTGATTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAACATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCATGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAATGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAATAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTTTAAATCGATTTTGAAAAAGAACTACTAATCCTTAAATTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCTCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACTAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGGACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTAGTAATTGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAGTTGTTCGTTTGGAAATTTCCCGAGAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAACAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGAAATAGAACCAAGGTCTATCTTTTTTATCAAAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTAAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTGTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAATATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTT
Scaffold35015	Ensembl_Plants	sense_intronic	81589	81665	.	+	.	ID=gene:ENSRNA049465829	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGTCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	Scaffold35015	Ensembl_Plants	LTR	81032	83091	13066	-	.	ID=2131746	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GTTTGTTTCGAGAAAGATATCATCTAATTCTCCTTCTATTGATTCTTTTCTGACCGAGATGTACAGATCCGTGTGTCTACATACATAGATTCTGGTCATGGATTAACGAAAATGTGCAAGAGATCTATTTGCCTCTGCCATTCTACGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTATGTATTGCTTGACGTAACACCAATAGCTGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGACTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAGAATTTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTTGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATGTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATATATGAGATCGAGTATGGAATTCTATTTACTCACTTTAAATTGAGTATCGTGTCCCTCCTTTTCCCGCTAGGACCGGAAATCCTGTATTTTCCATATCCATACGATCGAGACCTTAGGTTTCTGAAATAGTGTAATGGAAAAAGAAGTGCTTCAAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGAACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGACTCCTCGGTTAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACAG
Scaffold25303	Ensembl_Plants	sense_intronic	66206	66375	.	+	.	ID=gene:ENSRNA049462985	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=CTACGGACTTGATTGTATCGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTAAAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTACAGTGTGTTGGAAAGATCCAGACATATATATCTAATTGGATGTAAGTTAGCATGAG	Scaffold25303	Ensembl_Plants	LTR/Gypsy	66317	66462	1137	+	.	ID=1636642	repeat_name=RLG_Wilma_3B_030_O03-1	repeat_type=LTRs	sequence=TACAGTGTGTTGGAAAGATCCAGACATATATATCTAATTGGATGTAAGTTAGCATGAGTTATTATTGTTGACATTACCCTTGAGGTAAAAGGTTGGGAGGCGAAACTATAAGCCCCTATCTTTCTCTGTGTTTGATTAAAATTCC
Scaffold9609	Ensembl_Plants	sense_intronic	84705	84781	.	-	.	ID=gene:ENSRNA049461377	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	Scaffold9609	Ensembl_Plants	LTR	80385	85259	34340	+	.	ID=2131754	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=CCTGAGTCAGACATCAAATAGCTTTGATTTGCATTATCCGTTGGAATGTATCAAAATCAATAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACAGTCTAGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGGTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATAATGCTAAGAATAGTTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCATGGCTAAAGCTGAAGTAGCTACTTTCGAAGTAACAAAAAGAAAAGCAACAACTGGAATGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATTAGACTTTCATCTCGCACGACTCCTAAGTGATAAAAGAAAGAAGAACTTGTCCTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCAAAATCGATTTAAAAAAAGAACTACTGATCCTTAACTTTTCAAGGAATGCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCTGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAATGGATGCTCCTATTACACTTGTAGTCTTTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCTGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATGGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACAAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAATGATGGATATAAGCGCAACTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCAGATGAACCATATAGCCAAGAGAAACCGTGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATTGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAAAAACTCTGTTATAGCCATTTATGTACATTCAATGTACTCTACGGATAGAGAAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAAAAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATTGATCATCAGAAGAAGAATTAGGCAAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGAAAATGAAACGCTTCCATAAAAATTCTCATAGAATCAAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCTGAAAAGTCCCAATTGTTTCAATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATCATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAAAGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGAAACTTTCCACGTTGATCCTTTTTTATTACGTCTTGTTTTTACTCCTGTATTGGGAGTTACTCTACGTATTGCTTGAGGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCATGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGAATTTTGCAGTTCTTTTTTTCTGTAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCATTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCTGTACACACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCAGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATTGACAAAGAAGTGCTTCGAATCATTGCTATTTGACTTGGACCTGTTCTAAAAAAGTTGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCTTTACGAAACTTCCATTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGGTACAAGTCTTGGATAAGAATCTACAACGCACTAGAATGCCCTTGTTGACGATTCTTTACTGCGAAAACATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTTCTCTTACTAATACTACATAATGTTCTTGTAAATTATGGCCAATACCAAGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATT
Scaffold9609	Ensembl_Plants	sense_intronic	83934	84007	.	-	.	ID=gene:ENSRNA049461367	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTGTGTACAGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold9609	Ensembl_Plants	LTR	80385	85259	34340	+	.	ID=2131754	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=CCTGAGTCAGACATCAAATAGCTTTGATTTGCATTATCCGTTGGAATGTATCAAAATCAATAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACAGTCTAGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGGTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATAATGCTAAGAATAGTTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCATGGCTAAAGCTGAAGTAGCTACTTTCGAAGTAACAAAAAGAAAAGCAACAACTGGAATGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATTAGACTTTCATCTCGCACGACTCCTAAGTGATAAAAGAAAGAAGAACTTGTCCTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCAAAATCGATTTAAAAAAAGAACTACTGATCCTTAACTTTTCAAGGAATGCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCTGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAATGGATGCTCCTATTACACTTGTAGTCTTTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCTGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATGGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACAAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAATGATGGATATAAGCGCAACTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCAGATGAACCATATAGCCAAGAGAAACCGTGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATTGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAAAAACTCTGTTATAGCCATTTATGTACATTCAATGTACTCTACGGATAGAGAAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAAAAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATTGATCATCAGAAGAAGAATTAGGCAAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGAAAATGAAACGCTTCCATAAAAATTCTCATAGAATCAAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCTGAAAAGTCCCAATTGTTTCAATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATCATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAAAGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGAAACTTTCCACGTTGATCCTTTTTTATTACGTCTTGTTTTTACTCCTGTATTGGGAGTTACTCTACGTATTGCTTGAGGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCATGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGAATTTTGCAGTTCTTTTTTTCTGTAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCATTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCTGTACACACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCAGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATTGACAAAGAAGTGCTTCGAATCATTGCTATTTGACTTGGACCTGTTCTAAAAAAGTTGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCTTTACGAAACTTCCATTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGGTACAAGTCTTGGATAAGAATCTACAACGCACTAGAATGCCCTTGTTGACGATTCTTTACTGCGAAAACATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTTCTCTTACTAATACTACATAATGTTCTTGTAAATTATGGCCAATACCAAGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATT
Scaffold18296	Ensembl_Plants	sense_intronic	27687	27760	.	+	.	ID=gene:ENSRNA049461273	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAA	Scaffold18296	Ensembl_Plants	LTR	26991	31301	31568	-	.	ID=2131751	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTTGGAATGTATCAAAATCAATATCAAAATCAATAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTAATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTATGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTTGAGAAAGATATCGTCTGATTCTCCTATTGATTCTTTTCCGATCGAGATGTACGGGTCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCAGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTTTTTTTACTCCTATATTGGGAGTTACAATACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTCCTTCTTTCATAATACGGGTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGCGTGAAAGAGGCTCAAGAATCCGTTTTCTTTTTATAGGGGCTAAAATCACTTATTTTTTGGCTTTTTGACCCCATATTTTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTACGGAATTCTATTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTCCCTGCTAGGATAGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCTGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTACGAAACTTTCGTTATTGGGTCCTTCTCCTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGATGATTCTTTACTGCGACTGCATCCAGCTCGAATAATGCGATATCTCACACCGAGTTCAAAGATACTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTGATTTCAAATCCAGAAGTGAATCGTACTAATTTCCTTTACGTAAGGCAGAGTTGGGTTTTTGGGGTTGATAGTGGAAAAGTGGACAAAGAA
Scaffold18296	Ensembl_Plants	sense_intronic	30011	30089	.	+	.	ID=gene:ENSRNA049461238	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold18296	Ensembl_Plants	LTR	26991	31301	31568	-	.	ID=2131751	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTTGGAATGTATCAAAATCAATATCAAAATCAATAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTAATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTATGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTTGAGAAAGATATCGTCTGATTCTCCTATTGATTCTTTTCCGATCGAGATGTACGGGTCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCAGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTTTTTTTACTCCTATATTGGGAGTTACAATACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTCCTTCTTTCATAATACGGGTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGCGTGAAAGAGGCTCAAGAATCCGTTTTCTTTTTATAGGGGCTAAAATCACTTATTTTTTGGCTTTTTGACCCCATATTTTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTACGGAATTCTATTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTCCCTGCTAGGATAGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCTGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTACGAAACTTTCGTTATTGGGTCCTTCTCCTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGATGATTCTTTACTGCGACTGCATCCAGCTCGAATAATGCGATATCTCACACCGAGTTCAAAGATACTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTGATTTCAAATCCAGAAGTGAATCGTACTAATTTCCTTTACGTAAGGCAGAGTTGGGTTTTTGGGGTTGATAGTGGAAAAGTGGACAAAGAA
Scaffold21256	Ensembl_Plants	sense_intronic	36997	37070	.	-	.	ID=gene:ENSRNA049459534	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAATGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold21256	Ensembl_Plants	LTR/Copia	36253	37015	5364	+	.	ID=311928	repeat_name=LTR_DQ537337.1_386	repeat_type=LTRs	sequence=CACATCATTAATATGATGGACAAGACCCATCCGTTAGCTTAGCATAAATGATCGTTTAGTTTATTGCTATTGCTTTCATCATGACTTATACATGTTCCTCTGACTATGAGATTATGCAACTCCCGAATACCAGAGGAATACCTTGTGTGCTATAAACGTCACAACGTAACTGGGTGATTATAAAGATGCTCTACAGGTGTCTCCAATGGTGTTTGTTGAGTTGGCATAGATCGAGATTAGGATTTGTCACTCAGTGTATCGGAGAGGTATCTCTGGGCCCTCTCGGTAATGCTTATCACTATAAGCCTTGCAAGCAATGTGACTAATGAGTTAGTTGCTGGACAATGCATTACGGAACGAGTAAAGAGACTTGCTGGTAACGAGATTGAACTAGGTATGTTCATACCGATGATCGAATCTCGGACAAGTAACGTACTGATGACAAAGGGAACAACGTATGTTGTTATGCGGTTTGACCGATAAAGATCTTCGTAGAATATATAGGAGCCAATATAAGCATCCAGGTCCACTATTGATTATTGACCGGAGATGTGTCTCGGTCATGTCTACATAGTTATCGAACCGGTAGGGTCCGCACGCTTAACGTTCAATGACGATTTGTATTATGAGTTATATGATTTGATGTATCGAAGTTTGTTCGGAGTCCCGGATGTGATCACGGACATGACGAGGAGTCTCGAAATGATCGAGACATAAAGATCGATACTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAG
Scaffold47651	Ensembl_Plants	sense_intronic	58918	58996	.	-	.	ID=gene:ENSRNA049457705	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTTTCATGCATGGTTTTGCATGAGAGACATAAGCGAGGAATCCTCTTTTCTACTCTGAC	Scaffold47651	Ensembl_Plants	LTR	58698	60435	12867	+	.	ID=2131758	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TTTCTCCTTTGGATTCATCTGTACTAGCATACGTTTCATTCTTGTTTGAGTAATAGAAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGAAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTAGAAAAGAGGATTCCTCGCTTATGTCTCTCATGCAAAACCATGCATGAAACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTCATTACCTTCCTCACGTATGTATAAGACCGAATCCATTATTTTCCGAAATCGATTTCGAAAAGGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCGTCGGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCGTGGTTCCATAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGTATCTACATCGATAATTCAAGCATTGTATACATCATTAGTCTGATTCTTTGTAGGAACTACCCGTAATAATGAACTTGCAAAATGGATCTGTTTATCATAAACAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTTTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTTTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTAATGAAAAGGGGCTGGGGAAAGCTTAAATCCAAGTCCTACAGTGATGGATATAAGCACAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAAGCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGTCCGTAGATCTCTCTTGGTATATCTAGACAATAGGTAGGAACATAAAATGAAACATTCTGGATCTACAAAGATAGTTATTAAATCACTAGCACCACATAAAAACATTCCCCCTAGAGTAGGTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTGGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCATTTGGAAATTTCCCAAAAAGCAAACTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACATGTTGAAGAGATGAAATAGAACCAAGGTCTACCTTTTTGATCAGAGGTTGAATCGATCATCAGAATAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAATGCTTTCATAAAAATTCTCGTAGAATCGAGAATTAAGTTTTCATTATGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTTCGAAA
Scaffold70989	Ensembl_Plants	sense_intronic	50593	50656	.	-	.	ID=gene:ENSRNA049453606	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=CTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGAC	Scaffold70989	Ensembl_Plants	LTR	50041	51503	10838	-	.	ID=2151247	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TTGCAAAATTATTATGAAGCTACGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTCTTACCGCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAGGGCTTTCTACATAGGGATCGTAAAAACAACGATTTTTCCCTATCAGCTGTAGAAAGGAAGGACACTTCACGAGAATCAAAAAACGAAGAAAGTATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATACAACTAAAAAAAACTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTAAGTTCTTTTTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAAACGGGATAGTTACCTTTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCGGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATTTGAATAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGTAAGATCGAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTTATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAAGTAATAAACTGAATAAAAAGAGGGGGCAATCTAAATATTGCTAATATATTAGGACCATCTTATTAATAATTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAAAAAATACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAA
Scaffold47731	Ensembl_Plants	sense_intronic	23246	23319	.	-	.	ID=gene:ENSRNA049452472	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold47731	Ensembl_Plants	LTR	22402	23633	8982	+	.	ID=2131766	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=ACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGAATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTTCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCT
Scaffold23039	Ensembl_Plants	sense_intronic	16123	16197	.	-	.	ID=gene:ENSRNA049451811	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAAC	Scaffold23039	Ensembl_Plants	LTR	5274	16413	52044	-	.	ID=2151258	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TCTAAATAGGAGGCGTTGAGAACAAAGAAATTATTGGAGCTATCGTTTTCCTCTAGCATTAATAGAATTCATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTTGGAAAAATACCAGCCCCTTTCGGTTCATAATGAGACGGGACTAATTCTATTTTGATTCTATAGATTATTTCGCTTAGTACTATTATGTACAGAAGGGAGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAACGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTCTTACCGCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAGAAAAAAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAAAGGGCTTTCTACATAGGGATAGTAAAAACAACGATTTTTCCCTATCAGCTGTAGGAAGGAAGGACACTTCACGAGAATCAAAAAACAAAGAAAGTATATATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATACAACTAAAAAATCTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGAGAGTAAGTTCTTTGTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAAACGGGATAGTTACCTTTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGGGCCGTATGAGGTAGAAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCGGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATGAATATAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGTAAGATCAAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTGATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAACTAATAAAGTGAATAAAAAGAGGGGGCAATCTAAATATTGATAATATTAGGACCATCTTATTAATATTTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAAAAGAACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAATATTTGTTTGTCAAGATAAACAATGTCCATTAGGCACCTAATCTTTATGTCATAATAGACCCGAACACTTGCCTCGGACTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAATATAGAAGGATGGTAGATAGTAAAGAAAAGAACTAATCACAATATCTATCTTTCAAAATCTATCTTTCAAAGATTCACTAAAAAGACAGTTGGCGGGTCTCTTTGTATGTCTTGTCCGGAAAGAGCAGGACTTAATGATTATTCATTCGTCGGAACTAGAAGTAAAAATTGTTGTGGATAGGGATCCTGTAGAAACATCTTTTGAGGAATGGGCCAGACCTGGCCATTTCTCAAGAACACTAGCTAAGGGTCCTGATACTACCACTTGGATCTGGAACCTACATGTTGATGCTCATGTTTCGATGGTCATACTGGTGATTTGGAGGAGATTTCTCGAAAAGTCTTTAGTGCTCATGTCGGGCAACTTTCCATTATCTTTCTTTGGTTGAGTGGCATGTACTTTCATGGAGCCCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTCACTATGGACCCAGTGCTCAGGTAGTTTGGGCCTATAGTAGGGCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATCCAAATAACCTCTGGTTTTTTTCAGCTTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTCTATTGTACTGCAATTGGTGCATTGATTTTTGCAGCGTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCCGCTCCCAAATTGGCCTGGTTCCAAGATGTAGAATCCATGTTGAATCACCACTTAGCGGGATTATTAGGACTTGGGTCTCTTTCTTGGGCGGGGCACCAAATTCATGTATCTTTACCAATTAACCAATTTCTTGACGCTGGAGTGGATCCTAAAGAGATACCACTTCCTCATGAATTTAACTTGAATCGGGACCTTTTGGCTCAACTTTATCCAAGTTTTGCCGAAGGAGCAACCCCTTTTTTCACTTTAAATTGGTCCAAATACGCAGAATTTCCGACTTTCCGTGGAGGACTAGATCCAGTAACCGGTGGTCTCTGGCTGACCGATATTGCGCACCATCATTTAGCTATTGCTATTCTTTTCCTAATTGCAGGTCATATGTATAGGACCAATTGGGGTATTGGCCATGGACTTAAAGATATTTTGGAGGCTCACAAGGGCCCATTTACAGGACAAGGCCATAAGGGTCTTTATGAAATCTTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTATTCTATGCCTCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTCGGTGCTGCTGCACATGCAACAATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGCGTCCTTAGACACCGCGATGAAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATGATACCATGAGTGCTTTAGGCCGTCCACAAGATATGTTTTCGGATACTGCCATACAATTACAACCTATCTTTGCTCAATGGGTACAAAATATCCATGCTACTGCGCCTGGCGTAACAGCTCCTGGTGCAACAACAAGTACTAGCTTAACGTGGGGAGGCGGCGAGTTAGTAGCAGTAGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTTAGTCCATGACATTCATGCATTTACCATACATGTGACTGTATTAATACTTTTTAAAGGTGTTTTATTTGCTCGGAGTTCCCGTTTGATACCCGATAAAGCTAATCTAGGTTTTCGCTTTCCTTGCGATGGGCCTGGCCGAGGGGGAACATGCCAAGTATCCACCTGGGATCATGTTTTCTTAGGTTTATTCTGGATGTACAATGCAATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATTACAGGGGAAACTTTGCCTAGAGTTCCATTACGATTAATGGGTGGCTTCGAGATTTCTTGTGGGCACAGGCATCGCAAGTCATTCAGTCTTATGGTTCTTCATTATCTGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTCATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGCACTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCATGACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCCAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCATCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTAAAGAATGTCTTTATCAGAATGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGTGCTGCTGGTCCAGTGAATATTGCTTATTCTGGAGTTTATAGTGGTGGTATACAATAGGATTACGCACCAATGAGGATCTTTATACTGGAGCTCTTTTCTATTATTTCTTTCTACGCTGTCCTTAATAGCGGGTTGGTTACATCTACAACCCAAATGGAAACCAAGCCTTTCGTGGTTCAAAAACGTGGAATCTCGTCTCAATCATCATTTGTCAGGACTTTTCGGGGTAAGTTCTTTGGCTTGGACAGGACATTTAGTTCATGTTGCTATTCCCGCATCCAGGGGGAGTACGTTCGATAGAATAATTTCTTAGATGTATTACCCTATCCCCAGGGGTTGGGACCCCTTTTGATGGGTCAATGGAATCTTTATGCCCAAAACCCTGATTCAAGTAATCATTTATTTGGTACCGCTCAAGGAGCGGGAACTGCCATTCTAACTCTTCTTGGGGGATTCCATCCACAAACACAAAGTTTGTGGCTGACCGACTCACCATCATTTAGCTATTGCATTTATTTTTCTCATTGCCGGTCACATGTATCGAACTAACTTTGGAATTGGGCACAGTATTAAAGATCTTTTAGAAGTGCATACTCCTCCGGGGGGTAGATTAGGGCGTGGGCATAAGGGCCTTTATGACACAATCAACAATTCGATTCATTTTCAGTTACGTCTTGCTCTAGCTTGTTGGGGGGTTATTACTTCCTTAGTAGCTCAACATATGTACTCTTTACCTCCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCACCAATATATTGCAGGGTTCATCATGACAGGGGCTTTTGCTCATGGAGCTATTTTTTTATTAGGGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCTATCATGACAGGGGCTTTTGCTCATGGAGCCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCTAGCCTCTTTCTAGGATTCCATACCTTGGGCCTTTATGTTCATAACGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTGATCGAACCTATATTTGCCCAATGGATACAATCTGCTCATGGCAAGACGACATATGGGTTCGATATACTCTTATCTTCAACGAATGGCCCCGCTTTCAATGCGGGTCGAAGCCTATGGTTGCCCGGATGGTTGAATGCTGTTAATGAGAATAGTAATTCGCTTTTCTTAACAATAGGACCTAGGGATTTCTTGGTTCATCATGCTATTGATCTAGGTTTGCATACAACTACATTGATTTTAGTAAAGGGCGCTTTAGATGCACGCGGTTCCAAATTAATGCCAGATAAAAAGGATTTTGGATATAGTTTTCCTTGTGACGGCCCAGGGCGCGGCGGTACTTGTGATATTTCTGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACTTTTTATTGGCATTGGAAACATATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTATCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTAGCTAATTTAATTCACTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGCACACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTCTTGATTGCCTCAACATTAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTTGTACTGTATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTGCCTTTTTTAGATTTCTTTTTCTATTTAATTTTCCATCTAGGATTAGAACCGTATACTTGGTAATAATAGCAACGACACATTATGGCAAAAAAAAATTGACTCAGAGGGAGAAGAAGCGGCAGAAATTAGAACAGAAATATCATTTGATTCGTCAATCTTTAAGAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAAGAAAATGCGAGAAAAATTGCAATCCCTACCGCGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTTGACCGGAAGACCTAGAGCTAACTATCGACATTTTGGGCTATCCAGACACGTACTTCGAGAAATGGTTTATGAGTGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCATTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTATATAAATGGACTATTCTATTTGTATAGATATTGGTAGAGGGGTGTATCCAACCCTCTTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGTATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTAGGGTTGCAGGTTCGATTCCCACTACCGGCTCCATACTCCTTCTTTTATGATATATGCATGATATAATATATACATCATGCATTTGTATCTGGATTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTTCTCGGAAGAAGCAAAAAAATAAAAGAAAGAATAAAATATGAAAGATAAGCGTCCATTGTCTAATGGATAAGACAGAGGTCTTCTAAACCTTTGGTGTAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATACTAAACTAAAAACAAAGAAAACTTTTTTGCATGATTCGAATGAAAAAGCTTTCTCAACGATTCCTATTCTACTAACAAGAGTAGAGATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCCAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCACTTGCTCGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCAGAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGCTATCTGCTCTTCCACTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGTGCTAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCCGCGGATCCTACTCTGGAAACAGAAATACCCACATTAGTAGCGGGTCGAATTCCGGCATTGAATAGATCCGCAGATAAGAATATTTGTCCATCTGTAATGGAGATTACATTAGTAGGAATATAGGCGGAAATGTCTCCAGATTGAGTTTCAACTATTGGTAAAGCAGTCATACTTCCTTTGCCTAAAAGAGAATTTAATTTAGCGGCTCTCTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGGCCGGGAGGTCTTGTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATAGCCCCCTCCTCATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCGTATACGGAACGCCTGGAAATTATACTTGGAGCAGGAGATTCAATTAAGCGAGATTCGGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGAGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTCGGAAGCAAGGGGAAAGATAATGCGTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTACTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACTTGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTTATTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGTTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTGGAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTTGATTCATTTGGCTCTCACGCTCCTTTTTTCTATAGCTATTTCCATATCTTTTTTTAAGTAATGGGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAATATGAAAATTAATAGAATTCTTTTTTATTTTATTTTTCTTCAAATCCAAATTTTTTCTCTTTTTTATGCATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCTCTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTCGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTAGAGATCTTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAATGTGCAGCTAGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAATCAAACACGAACCACTACAGTTATATTTATAAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAAGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAGCTTTCCACTTTCCTAAACTAAGGACAGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATTGGGTATTATCTGTCCCGATAAATAGATAATTCTAGGAGTAATAAATAGGAGTAGATTAAATAAAGTATTGATATAATTAGAATTGCGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCAAAAGAATTTTTTTAAGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTGTCTCACAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATA
Scaffold23039	Ensembl_Plants	sense_intronic	6785	6867	.	+	.	ID=gene:ENSRNA049451817	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCAAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTCCAAATAATCTACTTTCAT	Scaffold23039	Ensembl_Plants	LTR	5274	16413	52044	-	.	ID=2151258	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=TCTAAATAGGAGGCGTTGAGAACAAAGAAATTATTGGAGCTATCGTTTTCCTCTAGCATTAATAGAATTCATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTTGGAAAAATACCAGCCCCTTTCGGTTCATAATGAGACGGGACTAATTCTATTTTGATTCTATAGATTATTTCGCTTAGTACTATTATGTACAGAAGGGAGGAGCCGTATGAGATGAAAACCTCATGTACGGTTTTGGAACGGAGATTTTTTGAATAGAATGAACGACCGTAACGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTCTTACCGCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAGAAAAAAGAGGATCAAATTTTCTAGTAAATACTAGAAAAAAAGGGCTTTCTACATAGGGATAGTAAAAACAACGATTTTTCCCTATCAGCTGTAGGAAGGAAGGACACTTCACGAGAATCAAAAAACAAAGAAAGTATATATGGCCTATACTACTACTCTATGGATAAAGTTTCTCAAATTGATAGAGAAAGCACCGTAAAGATCAATTAGTGAGCGACTGGGTCGATACAACTAAAAAATCTGCTTACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAAGGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGAGAGTAAGTTCTTTGTTCTTTCTTATGGAAAAAAGTCTTTTTCAAGGATTCTATAGAGATTTCATATATGAAAACGGGATAGTTACCTTTCAGAAAATTTGAACGAAGGCTCTATATCTATCTATGCTTCATTCTTCTGAAGGTGGGAAAAAAGATCAAACTGATTATTGATAAAAATTAGGGTTTGAAACTTAGGTAATTAATTTCTTCTGCTTAACCCAAGAACAAATTGGATCGATTTTTTGATAAATCGAATTCAGTTAAGATAGGGGAAATTCAGATAGCAATTTCTGGGCCGTATGAGGTAGAAAACTCTCAAGTACGGTTCTAAGGGAAGGAACTTCCTATTCCGACCGAGGAGAACAGGCCATTCTACAGGGTGATTCGGAAATTGCGGAAGCTTGGTTTGATCAAGCTGCTGAATATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAACTGGTTGAAGATTACGAAGCGCTTTGAATGAATATAAGACCATGCTCCTTCTTTTTCATAAAATGGGTGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGTAAGATCAAATCAAGAATTTCATTATATCCATTTCTTATACCTTCTATTTGATATGATATTTCATAAGAATAAACCATAGGGATAGGGTCTAGAATAGAACTAATAAAGTGAATAAAAAGAGGGGGCAATCTAAATATTGATAATATTAGGACCATCTTATTAATATTTCTAATGAGTTATCTTGGAATTTAGAATCAAATAAAAAACCCTATATTATGCTCAAGGAAAGTAGATATAGATAGGAGCTTATGCCCTCAAAAAAAGAACACTAGTTTCTTAAATTAAAAATAAAAAAGATTTTTTTCTTACGTCGAGAAATATTTGTTTGTCAAGATAAACAATGTCCATTAGGCACCTAATCTTTATGTCATAATAGACCCGAACACTTGCCTCGGACTGACTTCAATATATAATTGCTCCAGTGAATAACTAAAAAATATAGAAGGATGGTAGATAGTAAAGAAAAGAACTAATCACAATATCTATCTTTCAAAATCTATCTTTCAAAGATTCACTAAAAAGACAGTTGGCGGGTCTCTTTGTATGTCTTGTCCGGAAAGAGCAGGACTTAATGATTATTCATTCGTCGGAACTAGAAGTAAAAATTGTTGTGGATAGGGATCCTGTAGAAACATCTTTTGAGGAATGGGCCAGACCTGGCCATTTCTCAAGAACACTAGCTAAGGGTCCTGATACTACCACTTGGATCTGGAACCTACATGTTGATGCTCATGTTTCGATGGTCATACTGGTGATTTGGAGGAGATTTCTCGAAAAGTCTTTAGTGCTCATGTCGGGCAACTTTCCATTATCTTTCTTTGGTTGAGTGGCATGTACTTTCATGGAGCCCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTCACTATGGACCCAGTGCTCAGGTAGTTTGGGCCTATAGTAGGGCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATCCAAATAACCTCTGGTTTTTTTCAGCTTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTCTATTGTACTGCAATTGGTGCATTGATTTTTGCAGCGTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCCGCTCCCAAATTGGCCTGGTTCCAAGATGTAGAATCCATGTTGAATCACCACTTAGCGGGATTATTAGGACTTGGGTCTCTTTCTTGGGCGGGGCACCAAATTCATGTATCTTTACCAATTAACCAATTTCTTGACGCTGGAGTGGATCCTAAAGAGATACCACTTCCTCATGAATTTAACTTGAATCGGGACCTTTTGGCTCAACTTTATCCAAGTTTTGCCGAAGGAGCAACCCCTTTTTTCACTTTAAATTGGTCCAAATACGCAGAATTTCCGACTTTCCGTGGAGGACTAGATCCAGTAACCGGTGGTCTCTGGCTGACCGATATTGCGCACCATCATTTAGCTATTGCTATTCTTTTCCTAATTGCAGGTCATATGTATAGGACCAATTGGGGTATTGGCCATGGACTTAAAGATATTTTGGAGGCTCACAAGGGCCCATTTACAGGACAAGGCCATAAGGGTCTTTATGAAATCTTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTATTCTATGCCTCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTCGGTGCTGCTGCACATGCAACAATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGCGTCCTTAGACACCGCGATGAAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATGATACCATGAGTGCTTTAGGCCGTCCACAAGATATGTTTTCGGATACTGCCATACAATTACAACCTATCTTTGCTCAATGGGTACAAAATATCCATGCTACTGCGCCTGGCGTAACAGCTCCTGGTGCAACAACAAGTACTAGCTTAACGTGGGGAGGCGGCGAGTTAGTAGCAGTAGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTTAGTCCATGACATTCATGCATTTACCATACATGTGACTGTATTAATACTTTTTAAAGGTGTTTTATTTGCTCGGAGTTCCCGTTTGATACCCGATAAAGCTAATCTAGGTTTTCGCTTTCCTTGCGATGGGCCTGGCCGAGGGGGAACATGCCAAGTATCCACCTGGGATCATGTTTTCTTAGGTTTATTCTGGATGTACAATGCAATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATTACAGGGGAAACTTTGCCTAGAGTTCCATTACGATTAATGGGTGGCTTCGAGATTTCTTGTGGGCACAGGCATCGCAAGTCATTCAGTCTTATGGTTCTTCATTATCTGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTCATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGCACTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCATGACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCCAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCATCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTAAAGAATGTCTTTATCAGAATGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGTGCTGCTGGTCCAGTGAATATTGCTTATTCTGGAGTTTATAGTGGTGGTATACAATAGGATTACGCACCAATGAGGATCTTTATACTGGAGCTCTTTTCTATTATTTCTTTCTACGCTGTCCTTAATAGCGGGTTGGTTACATCTACAACCCAAATGGAAACCAAGCCTTTCGTGGTTCAAAAACGTGGAATCTCGTCTCAATCATCATTTGTCAGGACTTTTCGGGGTAAGTTCTTTGGCTTGGACAGGACATTTAGTTCATGTTGCTATTCCCGCATCCAGGGGGAGTACGTTCGATAGAATAATTTCTTAGATGTATTACCCTATCCCCAGGGGTTGGGACCCCTTTTGATGGGTCAATGGAATCTTTATGCCCAAAACCCTGATTCAAGTAATCATTTATTTGGTACCGCTCAAGGAGCGGGAACTGCCATTCTAACTCTTCTTGGGGGATTCCATCCACAAACACAAAGTTTGTGGCTGACCGACTCACCATCATTTAGCTATTGCATTTATTTTTCTCATTGCCGGTCACATGTATCGAACTAACTTTGGAATTGGGCACAGTATTAAAGATCTTTTAGAAGTGCATACTCCTCCGGGGGGTAGATTAGGGCGTGGGCATAAGGGCCTTTATGACACAATCAACAATTCGATTCATTTTCAGTTACGTCTTGCTCTAGCTTGTTGGGGGGTTATTACTTCCTTAGTAGCTCAACATATGTACTCTTTACCTCCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCACCAATATATTGCAGGGTTCATCATGACAGGGGCTTTTGCTCATGGAGCTATTTTTTTATTAGGGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCTATCATGACAGGGGCTTTTGCTCATGGAGCCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCTAGCCTCTTTCTAGGATTCCATACCTTGGGCCTTTATGTTCATAACGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTGATCGAACCTATATTTGCCCAATGGATACAATCTGCTCATGGCAAGACGACATATGGGTTCGATATACTCTTATCTTCAACGAATGGCCCCGCTTTCAATGCGGGTCGAAGCCTATGGTTGCCCGGATGGTTGAATGCTGTTAATGAGAATAGTAATTCGCTTTTCTTAACAATAGGACCTAGGGATTTCTTGGTTCATCATGCTATTGATCTAGGTTTGCATACAACTACATTGATTTTAGTAAAGGGCGCTTTAGATGCACGCGGTTCCAAATTAATGCCAGATAAAAAGGATTTTGGATATAGTTTTCCTTGTGACGGCCCAGGGCGCGGCGGTACTTGTGATATTTCTGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACTTTTTATTGGCATTGGAAACATATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTATCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTAGCTAATTTAATTCACTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGCACACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTCTTGATTGCCTCAACATTAGGCAAGTTTGGTTAATTTAGTTTGTTTTTTTGTACTGTATCAGCACCTAGTTCATTACTCTTGATAGAGAGGGAGGATCTGCCTTTTTTAGATTTCTTTTTCTATTTAATTTTCCATCTAGGATTAGAACCGTATACTTGGTAATAATAGCAACGACACATTATGGCAAAAAAAAATTGACTCAGAGGGAGAAGAAGCGGCAGAAATTAGAACAGAAATATCATTTGATTCGTCAATCTTTAAGAAAAAAGATAAGAAGCAAAGTTTCTCCCTTGAGTTTGAGTGAAAAAAGAAAATGCGAGAAAAATTGCAATCCCTACCGCGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTTGACCGGAAGACCTAGAGCTAACTATCGACATTTTGGGCTATCCAGACACGTACTTCGAGAAATGGTTTATGAGTGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCATTCGTATTTGTATGGATTTCTGGAATTGATAATCATAGAGGAGCCCTCTTTACCATTCTATATAAATGGACTATTCTATTTGTATAGATATTGGTAGAGGGGTGTATCCAACCCTCTTTTATCCACTAGTTACCCCTCTTTAGTTTAAGAGTATAGAGCAGTTTGGTAGCTCATAAGGCTCATAACCTTAGGGTTGCAGGTTCGATTCCCACTACCGGCTCCATACTCCTTCTTTTATGATATATGCATGATATAATATATACATCATGCATTTGTATCTGGATTTTTTGATTTCCTAAAAGAGTTTTGGTCTAACAGTTTTTTCTCGGAAGAAGCAAAAAAATAAAAGAAAGAATAAAATATGAAAGATAAGCGTCCATTGTCTAATGGATAAGACAGAGGTCTTCTAAACCTTTGGTGTAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATACTAAACTAAAAACAAAGAAAACTTTTTTGCATGATTCGAATGAAAAAGCTTTCTCAACGATTCCTATTCTACTAACAAGAGTAGAGATGCAAAATTTATTTGTTACTGAAGAGAAAACCGTTCCAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCACTTGCTCGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCAGAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGCTATCTGCTCTTCCACTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGTGCTAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCCGCGGATCCTACTCTGGAAACAGAAATACCCACATTAGTAGCGGGTCGAATTCCGGCATTGAATAGATCCGCAGATAAGAATATTTGTCCATCTGTAATGGAGATTACATTAGTAGGAATATAGGCGGAAATGTCTCCAGATTGAGTTTCAACTATTGGTAAAGCAGTCATACTTCCTTTGCCTAAAAGAGAATTTAATTTAGCGGCTCTCTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGGCCGGGAGGTCTTGTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGGTACATAAAATACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATAGCCCCCTCCTCATGGAAAGTAGTTACTACTTGAGCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATAAGCCCTGTTTGAAGAGGTTCGTATACGGAACGCCTGGAAATTATACTTGGAGCAGGAGATTCAATTAAGCGAGATTCGGAAGCTATAATTTCGCCTTTCCCATCAATAGGTTTAGCCAGAGCATTTACAACACGACCCAAGTAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTACCTTCTGCAAATTCGACTAATTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATCCCTACTTTCCTATTATATTGTTCAATACGTTCGAGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTCGGAAGCAAGGGGAAAGATAATGCGTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCTCTTCCATTCCAGGGACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTACTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACTTGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTTATTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGTTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTGGAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTTGATTCATTTGGCTCTCACGCTCCTTTTTTCTATAGCTATTTCCATATCTTTTTTTAAGTAATGGGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAATATGAAAATTAATAGAATTCTTTTTTATTTTATTTTTCTTCAAATCCAAATTTTTTCTCTTTTTTATGCATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCTCTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTCGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTAGAGATCTTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAATGTGCAGCTAGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAATCAAACACGAACCACTACAGTTATATTTATAAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAAGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAGCTTTCCACTTTCCTAAACTAAGGACAGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATTGGGTATTATCTGTCCCGATAAATAGATAATTCTAGGAGTAATAAATAGGAGTAGATTAAATAAAGTATTGATATAATTAGAATTGCGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCAAAAGAATTTTTTTAAGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTGTCTCACAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATA
Scaffold76953	Ensembl_Plants	sense_intronic	23117	23200	.	-	.	ID=gene:ENSRNA049450055	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAAAAGTTGTAAACTTACAAAATAATCTACTTTCAT	Scaffold76953	Ensembl_Plants	LTR	22725	23293	4337	+	.	ID=2151245	repeat_name=LTR_Os_chr_04_669	repeat_type=LTRs	sequence=ATGCACCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCCTGTTGGAAAACCCGCTGTCGGACCTGATTCATTGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCCAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATCCGAGCTTTTTCGAGTTGCTCAATGGTCCCTCTACGCAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATTTTGTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCTTTTTTTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTTAAGTAATGAGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTC
Scaffold67479	Ensembl_Plants	sense_intronic	29163	29236	.	-	.	ID=gene:ENSRNA049449845	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCAGTATTTGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold67479	Ensembl_Plants	LTR	28656	29747	7963	+	.	ID=2131768	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGAAACTTAATTTGAAAGCCATATTTCGACCCGGGCGCTTTTGGGATGCTTCTAATAACCACCGAATGGTAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATTGGAACTTTCCGCATCGATCCTTTTTATTACGTCTTGTTTTTACTTCTATATTGGGAGTTACTCTATGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTATGTCTTTTGTTGAATATTTTTCATGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTATTCGATTACGAAAAATTGGATCGAATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCATGAAAGAGTTTAAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCAAATACTGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAATATGGAATTCTGTTTACTCACTTTAAATTGAGTATATGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATGCATATGATCGAGTCCTTAGGTTTCCAAAATAGTGTAATGGAAAAAGAAGTCCTTCGAATCATTGCTATTTGACTCGGACTTATTCTGAAAAAGTCAAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGTACGTATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCCGCTCCAGTCCCCTTACGAAACTTTCCTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACGACGCACTAGAACGCACTTGTTGACGATTCTTTACTGCGACAACATCTAGGG
Scaffold222281	Ensembl_Plants	sense_intronic	562	640	.	+	.	ID=gene:ENSRNA049448506	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTTTGCAGTAGAGATGGAACTAAGAAAGAGAACCATCGACTATAAC	Scaffold222281	Ensembl_Plants	Retroelement	555	639	327	-	.	ID=2237279	repeat_name=RXX_Gk_DX403548.1_7560	repeat_type=Unknown	sequence=TTATAGTCGATGGTTCTCTTTCTTAGTTCCATCTCTACTGCAAAACTGGACATGAGAGTTTCTTCTCATCCAGCTCCTCGCGAA
Scaffold222281	Ensembl_Plants	sense_intronic	562	640	.	+	.	ID=gene:ENSRNA049448506	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTTTGCAGTAGAGATGGAACTAAGAAAGAGAACCATCGACTATAAC	Scaffold222281	Ensembl_Plants	LTR/Copia	534	583	272	+	.	ID=2238445	repeat_name=LTR_Gm_16_5235	repeat_type=LTRs	sequence=TTTACATGCTTTCTCATTCCATTCGCGAGGAGCTGGATGAGAAGAAACT
Scaffold2488	Ensembl_Plants	sense_intronic	959	1030	.	-	.	ID=gene:ENSRNA049448113	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=TTGAGCCGTACGAGATGAAATTTTCATATACGGCTCTTAGAGGGGGGACTCTGGTTAGTTACCTATCTCAAT	Scaffold2488	Ensembl_Plants	LTR	984	1039	349	+	.	ID=2233859	repeat_name=LTR_Os_chr_11_2029	repeat_type=LTRs	sequence=CCCCCTCTAAGAGCCGTATATGAAAATTTCATCTCGTACGGCTCAAGCAGAAACA
Scaffold191614	Ensembl_Plants	sense_intronic	974	1070	.	+	.	ID=gene:ENSRNA049448215	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=TGGAGCCGTATGATGCGGAAGTCTCACGTACGGTTCCCTGAGAAGGGAGTGGCTAAACCTGAAGAACAACTGTTCTAATTTAAGATTCTATTGCTAT	Scaffold191614	Ensembl_Plants	DNA/En-Spm	1021	1217	1660	+	.	ID=1718338	repeat_name=DTC_Jorge_3B_096_J17-1	repeat_type=Type II Transposons	sequence=GTGGCTAAACCTGAAGAACAACTGTTCTAATTTAAGATTCTATTGCTATCATAGTTCAAAAAGCGCTAGGCGTTAATTGTGCGTTTTGCCACCGCCTTGCGCTTTACTGACCAAAGCGCATGCTTATGCGCATTTATGCACAGATTATGCGTAGTTATGCGCAATGCGTTTTGCCAATGCCTAGAGCCTAGGCGCG
Scaffold125945	Ensembl_Plants	sense_intronic	6863	6941	.	-	.	ID=gene:ENSRNA049478286	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold125945	Ensembl_Plants	LTR	6657	8023	10402	+	.	ID=2131785	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=ATGGATATGCAAGCATACGTTTCTTGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTTGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCCTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGATTGAGAAATAGAACCATCTGATCTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAAGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTTTTATCATAAAGAGATTCATTGTTCCTGACCTTGCTTCACCTTAATTGTTATTTCAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGCCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGTTGTTAATATGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAG
Scaffold81036	Ensembl_Plants	sense_intronic	7293	7387	.	-	.	ID=gene:ENSRNA049476690	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCTTATGATGGGAAACTACCACGTTAGGTTTGGAAAGAGATGAGACCCGTTATAGTTTAGGGGGAGCAGATGGCTCGCACTATGCTTGAT	Scaffold81036	Ensembl_Plants	LTR	6876	7315	3779	-	.	ID=760173	repeat_name=LTR_AC207944.1_149	repeat_type=LTRs	sequence=AGATGGCTCGCACTATGCTTGATGAGTACAAGACGCCTCGTAACTTCTGGATTGAGGCAATTTATACTGCGTGCCACATCATCAACAGGGTATATCTTCACAAATTCTTCAAGAAGACTGCCTATGAACTCCTCACTGACAAGAAACCCAATGTGAGTTATTTCAAAGTCTTCGTTGCTAAATGTTGGATTAGAGATCCTCATCACAATGCTAAATTTGCACCGAAAGCACATGAAGGTTTTATGCTTGGTTACGGAAAGGACTCGCACACCTACAGAGTCTTCAACAACGTTCTTCACAAGGTTGTTGAAACTGTAGATGTGCGGTTCGATGAAACTAATGGCTCGCAAAGAGAGCACCTACCTTCTGTGATAGATGAACCAGCACCTGAGGAATATATCAAGTTCAAGGCGACTGAGGATGTCATTCCTACCAAAGA
C141262992	Ensembl_Plants	sense_intronic	976	1054	.	+	.	ID=gene:ENSRNA049447640	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GGGAGTCATGCAAGATGAAAGTCTCATGCATGGTTCTGCATGAGAGAAAGAAGCAAGAAATCCTCTTTTTGACTCAGAT	C141262992	Ensembl_Plants	LTR	960	1071	725	-	.	ID=2131845	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=AACGAGTGGAGTAAGGGATCTGAGTCAAAAAGAGGATTTCTTGCTTCTTTCTCTCATGCAGAACCATGCATGAGACTTTCATCTTGCATGACTCCCAAGTGATAAAAGAAA
Scaffold108132	Ensembl_Plants	sense_intronic	1862	1935	.	-	.	ID=gene:ENSRNA049475166	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGTTGTATTCAATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAT	Scaffold108132	Ensembl_Plants	LTR	1574	2631	7038	+	.	ID=2131852	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TACTCTACATATTGCTTGATGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTTTTAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATATTTTCCGTCTTTCATAATACGGTCAACCACCATGTTAACTAATCGACTACGAAAAATTGGATCGGATTTTGTAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCATGAAAGAGGTTCAAGAATCTGTTTTCTTTTTATAAGGGCTAAAATCACTTCTTTTTTTGGCTTTTTGACCCCATATTATAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATTGAATACAACTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTTTGTTTACTCACTTTAAATTGAGTATCTGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCATGTATTTTCCATATCCATACAATCAAGTCCTTAGGTTTCCTAAATAGTGTAAAGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCAAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAGTTTCCATATTGACCTTGGACATATAGGAGTTCTGAACCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTATGAAACTTTCATTATTGGGTCCTTCTCCTGTTGCTTGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACACACTAGAATGCCCTTGTTGATGATTCTTTACTGCGACTGCATCCAGCTTGAATAATGCGATATGTCACACCGAGTTCAAAGATACTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTATGCCCAATACCTGGTATAAGCAGTGATTTCAAATCCAGAAGTGAATCATACTAATTTCCTTTACGTAAGGCAGAGTTGGGTTTTTGGGGTTGATAGTGGAAAAGTCGACAGAGAAG
Scaffold14474	Ensembl_Plants	sense_intronic	162	238	.	+	.	ID=gene:ENSRNA049474513	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTATAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCC	Scaffold14474	Ensembl_Plants	LTR	4	4674	33315	-	.	ID=2131770	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GAGATTTTGAGTCTCGCGTGTCTACCATTTCACCATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGATATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGAATATGATAGATATGTCAAAAGCAGGTCTGATTGCACCTATTCCTAATCCTAAATAGAATGTAAGGACATAGGGATTTCTATGTAACCAGAGTATCCTGTTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCATCAAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTTGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCATGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGTTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGGAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATACAAGAAAGAAGAACTAGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAGTCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACAACTTTCATCGAATACAACTTCCACATAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGAATTTTCCATATCCATATGATCGAGTCCTTAGGTTTCCGAAATTGTGTAATGGAAAAAGAAGTGCTTCTAATCATTGCTATTTGACTCGACCTGTTCTGAAAAAGTTGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTGTGAAAGAATTTCCATATTGACCTTGGACATATAAGATTTCCGAATAGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATAGCTCACACCGGGTAAATCCTTAACCCTTCCTGCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTATAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTTGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCTGCCCCGAAGACTAACTAAGACCAATTGAGTCACATTTTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCA
Scaffold113167	Ensembl_Plants	sense_intronic	4150	4367	.	+	.	ID=gene:ENSRNA049474457	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGAAATTTCTCAGTGCTTGATAAGCAGATAACTTTTAAGAGTTATAGACCGTATCAATCATTAGGTGCATTGCTGACTGGTCTAGTCTTTTTCGAATCATTTCATTAATCTCCGTCCGTCCATAATGCCTGTTTTGAGAAATATTTTATATCTTTTAATTTGCAC	Scaffold113167	Ensembl_Plants	LTR	3864	4216	1839	-	.	ID=2131769	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=ACTGAGAAATTTCCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGAGATCCTTTTTCTCGTTCGAGAGTCTCCGCCCTTCTTCCGCTCCATCCCGAAGACTAACTAAGACCAACTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAATGAGAAGATTGTTCTTTTACCAAACATATGCCGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGA
Scaffold95663	Ensembl_Plants	sense_intronic	248	321	.	-	.	ID=gene:ENSRNA049473742	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTAC	Scaffold95663	Ensembl_Plants	LTR	1	1476	10384	+	.	ID=2131850	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=CTGTCTTTTGTTGAATCTTTTTCACGTCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTTCCGTCTTTCATAATACAGTTAACCACCGTGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCTGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCAGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCTTTGCTATTTGACTCGGACCTGATCTGAAAAAGTCAAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACGGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAATCCTTAACCCTTCCTCCTCTTACTAATACTATAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCGACTTTACATAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTATCCCTTTACAGCACCGTACATGAGATTTTCACCTCATACGACTCCTCGGTAAATTCTTTCGAAGGGATCCTTTTCCTTGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCACTTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATCTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTGGCTTTATTCTTTATGTATTTCATTTCGATTTTCCCTCTTCCTCTATCCCTATCCTCTAGGT
Scaffold169699	Ensembl_Plants	sense_intronic	72	133	.	-	.	ID=gene:ENSRNA049473316	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCACCGT	Scaffold169699	Ensembl_Plants	DNA/En-Spm	1	94	652	-	.	ID=1404739	repeat_name=trep765	repeat_type=Type II Transposons	sequence=GGGGAGTTATTGTCTATCACCGTTCATGGGTCGACCATAACGGGCCATCGTTAATATGCCGTATTTGATGACGCTATGAAAACGGCCCAACGT
Scaffold13669	Ensembl_Plants	sense_intronic	43541	43699	.	+	.	ID=gene:ENSRNA049473226	Name=Intron_gpI	biotype=sense_intronic	description=Group I catalytic intron	sequence=TCAGAGAAACCCTGGAATTAAAAAAGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGATTCTTTTTTCATAAGATTAATAGACAAATTCCTCACGACCACCAATTTATTTCATAATTTTTGGAGTAGCAGAAGTATGGTTTCTGTTCAGA	Scaffold13669	Ensembl_Plants	LTR/Gypsy	43606	45444	13874	+	.	ID=1082458	repeat_name=RLG_Sakura_3B_068_G05-1	repeat_type=LTRs	sequence=ATTCTTTTTTCATAAGATTAATAGACAAATTCCTCACGACCACCAATTTATTTCATAATTTTTGGAGTAGCAGAAGTATGGTTTCTGTTCAGATCATTACAGACTGTTCTATTTCTGACTGATTCTGTTTTCATTGCATAGTTTGCTTGTTTTCTAGTTTCTATGGCTTATATTTCTCAATATAATTTGTAAAAATGATATGGTACAGTAGGCATTGTGTGAGAACAATTATGAACCTTGTCTTTGACAGTACCAAAGTGAATGGTTTACTCTTTATCATACTAACCCATCTCACGAAGTTCCATTAAGTTTTGTGTGATTGAAGTTTTCAAGTTTTGAGTGAGATATCGATATGAGGAGAATGAGTGGAAAGACCCTAAGCTTGGGGATGCCCAAGGCACCCAAGGTAATATTAAAAGAAGACTCAAGCGCGTAAGCTTGGGGATGCCCCGGAAGGCATCCCCTCTTTCGTCTTAAAAACTATCGGTATACCTTACTCGGAGCTATATTTTTATTCGTCACATGGTATGTGTTTTGCTTGGAGCGTATTTTCAATTTTACTTGATGTTTGAATAAAATCATTGGATCTTAAATCTTGAATGAAAAACAATCCTTCCATGGCTAGTTAATTATTTGACTACTCAGTGTTCTTCACTTATATCTTTTTGGAGTAGTTTCTTGTTTACTCACGTGCTTCACGTATATCCAATGAGTAAATGGTTGAATGAATTGAATATCATAAATTTGAATTTATATATGTTTCATATGCTTATACCATGGGGAGTAATGACTTCACACATAATAAGTATAGGTGGTAAATTTATTGAAAGTTAGCAAACACAGAATTGGTCACTTGAACAATTCATGAAAGAATATTAAAGGAAAAGATATTTCATATATAAATACACTATCTTGGACATCTTTTGTAATTGTGAGCACACATTAAAATATGACATGCTAAAAGGTTGATGTTGGACAAGGAAGACAACTTGATGGGTTATGTTTTCCTATATCCGAAGCGTTATATTGTCTTGGATCATCCAACATGTTGAGCTTGCCTTTCCCTCTCATGCTAGCCATATTCTTTGCACCAAGTAGAGATACTACTTGTGCTTCCGAATATCCTTAAACCCAGTTTTTCCATGAGAGTCCACCATATCTACCTATGGATTGAGTAAGATCCTTCAAGTAAGTTGTCATCGGTGCATGCAATAAAAATTGCTCTCTAAATATGTATGATCTATTAGTGCGAAGAAAATAAGCTTTATACGAACTTGTGATAGGGAAGAAATAAAAGCGATGGACTGCATAATAAAGGTCTTTATCACAAGCGGCAATATAAAGTGACGTTCTTTTGCATTAACATTTTGTGCATCCAACCATAAAATCGCACGACAACCTCTGCTTCCCTCTGCGAAGGGCCTATCTTTTACTTTTATGTTCTACCCTTATACAAGAGTCATGGTGATCATCACCCTCCCTTTTTACACTTTTTCCTTTGGCAAGCACTTTGTGTTGGAGCGATCCAGACATATATATCCACTTGGATGTAGGTTCTCATAAATTATTATTGTTGACATTACCCTTGAGGTAAAAGGTTGGGAGGCGAAACTATAAGCCCCTATCTTTCTCTGTGTCCGATTAAAACTTTGAACCCATAAATATCACATGAGTGTCAGCAATTGTGAAAGATTAAATGATAGTTGAGTATGTGGAGTTTGCTGAATCAAAGCTCTTACATAGACCCTTCCCGAAAATAAGATGAATTGCAATTGTTTGATGACTAAGAGCACAGTTTGTTAGTTTTCAAGAAAGTTTATGATCTATACTTTAACATG
Scaffold27045	Ensembl_Plants	sense_intronic	57013	57086	.	-	.	ID=gene:ENSRNA049471514	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=GAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCAATCCTTCGAGATCCACCTTAC	Scaffold27045	Ensembl_Plants	LTR	53252	58348	33888	+	.	ID=2131714	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=ATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTTTTCAGCACGAGATTTTGAGTATCGTGTGTCTACCATTTCACTATCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATTGATCAGTCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCAATATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGATAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGCGCATATGTTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTTTATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTAGTTCGGTATAGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCACATATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGCATGGGGTTCATTGATATTCCTGGTATAGTTGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGCTTGATCTTAAAGGGGATCTTCTATAATTTGGCACATAAGGGGTTATTTCTTGGTTTCGTCTAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAACGAACGCTCGTAAGGAGTCCCACTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAAAGTAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGACAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCGGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCTTAGATTCATGGAGATATAGAACAACATATAAGTTATCATGCTTGCATATCCATCATGTGAGTCTCCAACAATTATTCCAATAATAACATATCCGATTTTCCCTATGGACGAATATGCAAGCATATGTTTCATGCTTGTTTGAGTAATAGCAAGGAGGTTCCCCAAAATCATGCTAAGAATAGCTACGATTTGAAGAAGAAGATGCCATTCATTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGATTCGAAAAGAGGATTCCTCACTTATTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTTGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGTGTGTGTATAAGACCAGATCCATTCTTTTTCAAAATCGATTTCGAAAAAGAGCTACTAATCCTTAACTTTTCGAGGAATCCTTCATTAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTGAGAAAGCTTGAGAAATAGAACGACCTGATTTGATTCATTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACCATGTAGCATGTACATCGATAATTCAAGCATTGTATACGTCATTAGTTTGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTACTTATCATAAAGAGGTTCATTGTTCCGGACCCTGCTTCACCTAAATTGTTATTTGAACAAAAAGATGACAATAAACTTTTGGTAAAAGTTCTATCTTCGTCGGAGTGGGGATAACATTTCTCTTCTACATGTTTATGGAGTTTATCAAAACCCAAACATCTCAGAGATAGATATAGAGGTAGGAATTTGTCAAACGAACCACACTCCTTCATAGACGTCAGGAGTCCATTATGAAAAGGGGCTAGGGAAAGCTGAAACCCAAGTCCTACAGTGATGGATATAAGTGCAGTTGAAATTTTTGGGGAGTTATACATTTGTGTATCGATAAGACCGTTTACAATTTCTTGAAAATCGATCTCCACCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCAACCCATGAGTAAATATTTAATAGTAGCCGCATTAGACCGTAGATCTCTCTTGGTATATCCACACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAAATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTCCGTTTGGAAATTTCCCAAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCTGTTATGCTTATTACTAAACTGGTTGAAGACATGAAATAGATCCAAGGTCTATCTTTTTTATCAGAGGTTGAATCGATCATTAGAAGAAGAATTAGGCCAAAAATTAGGATACATTATGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTATGAAAAGTTCTGATTGTTTCGATTTTTGAAATGGGATACTTACGGAATCCCCATGAATAGGTCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCAAGAGGGCTTAGTTGATAATGATTTTTATTTTCTCTTTCTTTTCCTTTTTGTTTGTTTTCAGAAAGGTATCATCCGATTCTCCTTCTATTGATTCTTTTCTGATCGAGGTGTATGGATCCATGTGTCTACATACATAGATTATGTTCATGGATTAACGAAAATGTGTAAGAGCTCTATTTTCCTCTGCCATTCTATGAGTCGCTTACTTTTTGCGTATGCCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGGCCCGGATGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTGAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGCCTTCTTTTTACTGCTATATTGGGAGTTACTCTACGTATTGCTTGATGTAAAACCAAGAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATTGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGATGTGACATGAGTATGAAAGAGGTTCAAGAATCCGTTTTATTTTTATAAGGGCGAAAATCACTTATTTGTTTGGCTTTTTGACCCCATATTGTAAGGTGGATCTCGAAGGATTGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGGGATCGAGTATGGAATTCTATTTACTCACTTTAAATTGAGTACCTGTTTCCCTCCTTTTCCCACTAGGATCGGAAATCTTATATTTTCCATATCCATATGATCGAGTCCTTAGGTTCAAAATAGTGTAATCGAAAAAGAAGTGCTTTGAAACATTGCTATTTGACTCGGACCTATTCTAAAAAACTCGAGGTATTTTGAATTGCTTGTTGACATGGACAAAGTATGGGAAAACCGCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATTGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCTAGTCCCCTTACAAAACTTTCGTTGTTCGGTTAGCCATACACTTCACATGTTCCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTGGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGTAGTGATTTAAAATCCAGAGGTTAATCGCACTTTGCCAACTTTACGTAAGGTAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACGGATAAGTCACCCTTATTGTCCCTTTAAAGAACCGTGCATGCGATTTTCACCTCATACGACTCCTCGGTCAATTCTTTCTCAAGGGATCCTTTTCCTCGTTTGAGAGTCTCCGCCCTTCTTCCACTCCATCCTAAAGACTAACTAAGACCAATTTGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATACGATTAAAGGAGAAGATTGTTCTTCTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTTGATTTTCCCTCTTCCTCTATCCCTATCCTCTAAGTACAACGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCCATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGATCCAAAATTGA
Scaffold4709	Ensembl_Plants	sense_intronic	136317	136387	.	+	.	ID=gene:ENSRNA049471028	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTTTGAGGTGAAAATCTCATGTACGGTTCTTTAGAGGTATCGTTGTTTTGTTTTGCTATCCAAA	Scaffold4709	Ensembl_Plants	LTR	135972	136359	1717	-	.	ID=2131700	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=CTCTAAAGAACCGTACATGAGATTTTCACCTCAAACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTATTTTGTTCAAGAGTCTCCGCCCTTCTTCCACTCCACCCCGAAGACTAACTAAGACCAACTAAGTCACGCTTTCATGTTCTAATTGAACACTTCCCATTTATTATATGATCAAAGAAGAAGATTGTTCACCAAACAAATGCAGATCAAACACGTCTTGTAATAAGTAGAAATCTTTCTCGATACCAATCCCCTTGCCCCTCATTCTCTGAGAATCAGAATGATCCTTTCCGAGTATCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTTGACTTATTTTGTTGGCTTTATTTCTTATTTACTTCATTTTGATT
Scaffold20378	Ensembl_Plants	sense_intronic	156068	156146	.	+	.	ID=gene:ENSRNA049470859	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold20378	Ensembl_Plants	LTR	153350	157371	29585	-	.	ID=2131716	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=GCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCTGTTGAATGTATCAAAATCAATAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAACCCCAAAGAGGTGCATATGGTACCCAAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACATAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCATGGTCTGGTTCGGTTAAGAATGTGCACGGTCTGGTTCGGGATGGGATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGAGGTTATTTCTTGGTTTCATCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGGCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAATGGATGCTCCTATTACACTCATAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAACATTGTATACGTCATTAGTCCGATTTTTGTAGGAACTACCAGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTTTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCAGATGAACCATATAGCCAAGAGAAAACATGAACCAGGATAGAAGAGCTTGCCCAACCCATGAGTAAATATTTCATAGTAGCCTAATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTATTGTAGCCATTTCTGTACATTCAATGTACTCTATGGATAGAGGAATACATAAAGTTGAACATAATAAAATGAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATGAAACTTCCATTGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATAAAGCTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGAAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTATGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCTGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGATCCATGTGTCTACATACATAGATTCTTTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGTCTCTGCCATTCTATGAGTCGCTTCATTTTTGCGTATAGCATCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGAAGCTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTTCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCAGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTATGTGTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATTGGAAATCCTGTATTTTCCATATCCATACGAACGAGTCCTTAGGTTTCCGAAATAGTGTGATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGAACTTGTTCTGAAAAAGTCAAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCAAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTACGAAACTTTCGTTATTGGG
Scaffold21061	Ensembl_Plants	sense_intronic	109581	109659	.	-	.	ID=gene:ENSRNA049470540	Name=Intron_gpII	biotype=sense_intronic	description=Group II catalytic intron	sequence=AGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGAC	Scaffold21061	Ensembl_Plants	LTR	108671	110531	14479	+	.	ID=2131717	repeat_name=LTR_Al_scaffold_0002_336	repeat_type=LTRs	sequence=TTCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAGGGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAGTCATACTCAATTCGATTGTTTGATCTTAAAGGGGATCTTCTATAATTTCGCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTCTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCATTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTAAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTATCTTGGTCGGAGTGGGGATAGCACTTCTCTTCTGCATGTCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTAAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTACACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAATAGAAGATCTCACA