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Bulk download of overlapping features is available in GFF3 (consists of one line per feature, each containing 9 columns of data, plus optional track definition lines, click here for details), FASTA (a file with sequence information, click here for details) and in a custom format TSV (Tab-Separated Values, click here for details).

Source genome assemblies and non-coding RNAs can be found here.
Source Transposable Element SQL tables can be found here.

PlaNC-TE data using Ensembl Plants v.38 previous releases

Species ncRNAs overlapping TEs TEs overlapping ncRNAs Overlapped Regions JBrowse
Aegilops tauschii (276 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Amborella trichopoda (219 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Arabidopsis lyrata (466 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Arabidopsis thaliana (722 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Beta vulgaris (3 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Brachypodium distachyon (180 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Brassica oleracea (381 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Brassica rapa (483 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Chlamydomonas reinhardtii (50 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Chondrus crispus (2 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Corchorus capsularis (546 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Cyanidioschyzon merolae (4 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Galdieria sulphuraria (1 overlap) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Leersia perrieri (220 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Medicago truncatula (380 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Musa acuminata (251 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza barthii (161 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza brachyantha (245 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza glaberrima (528 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza glumaepatula (124 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza indica (520 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza longistaminata (181 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza meridionalis (210 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza nivara (113 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza punctata (190 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza rufipogon (128 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Oryza sativa (1087 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Ostreococcus lucimarinus (2 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Physcomitrella patens (53 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Populus trichocarpa (373 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Selaginella moellendorffii (532 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Setaria italica (150 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Solanum lycopersicum (295 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Solanum tuberosum (395 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Sorghum bicolor (338 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Theobroma cacao (140 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Triticum aestivum (2168 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Triticum urartu (187 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Vitis vinifera (131 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here
Zea mays (1915 overlaps) .gff3 | .fa .gff3 | .fa .gff3 | .fa | .tsv (with nts) Click here